Wall clock time and date at job start Tue Mar 31 2020 11:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09006 * 109.47112 * 2 1 4 4 C 1.50703 * 109.47306 * 239.99767 * 2 1 3 5 5 H 1.07994 * 120.00005 * 245.23706 * 4 2 1 6 6 C 1.37877 * 119.99451 * 65.23530 * 4 2 1 7 7 N 1.31511 * 120.00534 * 5.50185 * 6 4 2 8 8 Si 1.86807 * 119.99576 * 185.49929 * 6 4 2 9 9 H 1.48505 * 109.46834 * 94.99736 * 8 6 4 10 10 H 1.48495 * 109.46966 * 214.99777 * 8 6 4 11 11 H 1.48499 * 109.47017 * 334.99995 * 8 6 4 12 12 N 1.46897 * 109.47274 * 119.99892 * 2 1 3 13 13 C 1.46900 * 111.00462 * 176.04663 * 12 2 1 14 14 C 1.38577 * 111.00067 * 299.99707 * 12 2 1 15 15 N 1.31218 * 126.47267 * 340.92739 * 14 12 2 16 16 N 1.28527 * 109.85969 * 179.81616 * 15 14 12 17 17 C 1.30293 * 110.05665 * 0.45057 * 16 15 14 18 18 C 1.50698 * 126.35075 * 179.76149 * 17 16 15 19 19 C 1.54630 * 111.03945 * 51.98459 * 18 17 16 20 20 C 1.51102 * 104.72813 * 217.33706 * 19 18 17 21 21 C 1.30529 * 111.10390 * 16.42980 * 20 19 18 22 22 C 1.51104 * 111.10276 * 0.02562 * 21 20 19 23 23 N 1.36458 * 126.47577 * 161.22734 * 14 12 2 24 24 C 1.46504 * 127.13143 * 0.03277 * 23 14 12 25 25 C 1.52997 * 109.47068 * 265.03268 * 24 23 14 26 26 C 1.52992 * 117.50443 * 244.95057 * 25 24 23 27 27 C 1.53002 * 60.00273 * 252.51024 * 26 25 24 28 28 H 1.08999 * 109.47543 * 65.51613 * 1 2 3 29 29 H 1.09006 * 109.47469 * 185.51447 * 1 2 3 30 30 H 1.09007 * 109.47443 * 305.51553 * 1 2 3 31 31 H 0.96998 * 119.99942 * 180.02562 * 7 6 4 32 32 H 1.08992 * 109.47594 * 183.35018 * 13 12 2 33 33 H 1.08995 * 109.47023 * 303.35315 * 13 12 2 34 34 H 1.09005 * 109.46983 * 63.34711 * 13 12 2 35 35 H 1.09008 * 110.91179 * 175.99455 * 18 17 16 36 36 H 1.09006 * 110.38519 * 336.14394 * 19 18 17 37 37 H 1.08995 * 110.38817 * 98.52048 * 19 18 17 38 38 H 1.07999 * 124.45005 * 196.45969 * 20 19 18 39 39 H 1.07997 * 124.44886 * 179.97438 * 21 20 19 40 40 H 1.08997 * 110.38843 * 224.74902 * 22 21 20 41 41 H 1.09000 * 110.38470 * 102.37431 * 22 21 20 42 42 H 1.08993 * 109.47496 * 25.03936 * 24 23 14 43 43 H 1.08999 * 109.46883 * 145.03953 * 24 23 14 44 44 H 1.09007 * 115.54655 * 30.66015 * 25 24 23 45 45 H 1.09003 * 117.49881 * 0.02562 * 26 25 24 46 46 H 1.08998 * 117.50049 * 145.02138 * 26 25 24 47 47 H 1.08997 * 117.49647 * 252.50846 * 27 26 25 48 48 H 1.08994 * 117.49622 * 107.48379 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5816 -1.6352 -1.1336 6 6 1.7905 -0.1798 -2.4798 7 7 1.2175 0.9984 -2.5942 8 14 2.2769 -1.1344 -4.0101 9 1 1.1091 -1.9085 -4.5025 10 1 2.7228 -0.1874 -5.0634 11 1 3.3852 -2.0663 -3.6807 12 7 2.0196 -0.6924 1.1994 13 6 3.4850 -0.7945 1.1871 14 6 1.5753 -0.0640 2.3518 15 7 1.1280 1.1659 2.4467 16 7 0.7983 1.4180 3.6631 17 6 1.0228 0.3758 4.4121 18 6 0.7736 0.2709 5.8946 19 6 -0.6710 0.6959 6.2461 20 6 -0.5465 1.4291 7.5615 21 6 0.6918 1.7704 7.7938 22 6 1.5994 1.3224 6.6718 23 7 1.5258 -0.6054 3.6034 24 6 1.9286 -1.9574 3.9988 25 6 0.7044 -2.8751 3.9975 26 6 0.2571 -3.4582 5.3394 27 6 0.9322 -4.3572 4.3016 28 1 -0.3634 0.4259 -0.9352 29 1 -0.3634 -1.0229 0.0988 30 1 -0.3634 0.5970 0.8365 31 1 1.0471 1.3715 -3.4732 32 1 3.8170 -1.3629 2.0558 33 1 3.8063 -1.3010 0.2770 34 1 3.9191 0.2049 1.2192 35 1 0.9842 -0.7363 6.2542 36 1 -1.0692 1.3591 5.4781 37 1 -1.3081 -0.1812 6.3591 38 1 -1.3733 1.6422 8.2228 39 1 1.0239 2.3038 8.6722 40 1 2.5061 0.8707 7.0742 41 1 1.8480 2.1641 6.0255 42 1 2.6680 -2.3370 3.2937 43 1 2.3609 -1.9298 4.9990 44 1 -0.0713 -2.6232 3.2742 45 1 0.8347 -3.1877 6.2233 46 1 -0.8130 -3.5899 5.4993 47 1 0.3061 -5.0803 3.7788 48 1 1.9541 -4.6784 4.5026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001519636314.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:14 Heat of formation + Delta-G solvation = 122.275308 kcal Electronic energy + Delta-G solvation = -27558.734238 eV Core-core repulsion = 24037.128186 eV Total energy + Delta-G solvation = -3521.606052 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.97971 -39.59446 -38.73007 -38.60394 -35.40531 -34.75105 -32.11364 -31.29181 -29.29882 -29.11025 -28.45779 -27.26947 -26.07116 -24.03139 -23.25333 -23.17576 -22.18490 -21.11360 -20.49754 -19.63960 -18.60191 -18.10474 -17.45105 -17.07236 -16.70601 -16.60604 -16.31823 -15.91387 -15.59524 -15.07164 -14.93838 -14.45890 -14.00436 -13.81979 -13.70191 -13.36105 -13.13836 -12.99042 -12.95517 -12.82487 -12.69409 -12.66414 -12.50572 -12.39472 -12.33830 -12.27661 -12.17289 -12.05205 -12.04447 -11.52578 -11.46241 -11.10923 -10.94906 -10.87097 -10.60992 -10.27234 -9.75251 -9.14055 -8.15730 -6.28965 0.81635 1.32396 1.42766 1.44253 1.45535 1.56195 1.89348 2.40933 2.82122 2.99463 3.16432 3.25165 3.61071 3.68885 3.74817 3.80261 3.95321 4.02292 4.08414 4.16755 4.26465 4.37998 4.41511 4.51077 4.56373 4.57796 4.74072 4.76799 4.78884 4.80703 4.85372 4.91953 4.96339 4.98803 5.01979 5.03732 5.08033 5.14977 5.19599 5.27252 5.31918 5.40628 5.52861 5.63808 5.65466 5.87063 5.98715 6.05766 6.12005 6.60797 6.82372 7.39595 7.87937 8.93553 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.016748 B = 0.003860 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.403019 B = 7251.935223 C = 8209.972830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.241 3.759 3 H -0.019 1.019 4 C -0.525 4.525 5 H 0.074 0.926 6 C 0.013 3.987 7 N -0.921 5.921 8 Si 0.968 3.032 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.258 1.258 12 N -0.457 5.457 13 C 0.045 3.955 14 C 0.365 3.635 15 N -0.367 5.367 16 N -0.327 5.327 17 C 0.189 3.811 18 C 0.003 3.997 19 C -0.091 4.091 20 C -0.163 4.163 21 C -0.162 4.162 22 C -0.091 4.091 23 N -0.469 5.469 24 C 0.140 3.860 25 C -0.193 4.193 26 C -0.159 4.159 27 C -0.154 4.154 28 H 0.049 0.951 29 H 0.030 0.970 30 H 0.019 0.981 31 H 0.263 0.737 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.011 0.989 35 H 0.123 0.877 36 H 0.057 0.943 37 H 0.087 0.913 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.093 0.907 41 H 0.058 0.942 42 H 0.101 0.899 43 H 0.125 0.875 44 H 0.073 0.927 45 H 0.120 0.880 46 H 0.097 0.903 47 H 0.096 0.904 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.669 -10.039 23.282 25.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.135 3.865 3 H -0.001 1.001 4 C -0.563 4.563 5 H 0.092 0.908 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.793 3.207 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.182 1.182 12 N -0.182 5.182 13 C -0.102 4.102 14 C 0.008 3.992 15 N -0.211 5.211 16 N -0.166 5.166 17 C -0.079 4.079 18 C -0.018 4.018 19 C -0.129 4.129 20 C -0.181 4.181 21 C -0.180 4.180 22 C -0.129 4.129 23 N -0.163 5.163 24 C 0.018 3.982 25 C -0.212 4.212 26 C -0.195 4.195 27 C -0.192 4.192 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.038 0.962 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.030 0.970 35 H 0.141 0.859 36 H 0.075 0.925 37 H 0.105 0.895 38 H 0.164 0.836 39 H 0.166 0.834 40 H 0.112 0.888 41 H 0.077 0.923 42 H 0.119 0.881 43 H 0.143 0.857 44 H 0.091 0.909 45 H 0.138 0.862 46 H 0.115 0.885 47 H 0.115 0.885 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.049 -9.010 22.683 24.430 hybrid contribution 0.402 -0.265 -1.402 1.482 sum 1.451 -9.275 21.281 23.260 Atomic orbital electron populations 1.21519 0.97976 0.97989 0.99375 1.18919 0.92055 0.91095 0.84433 1.00148 1.21325 1.36201 1.08663 0.90139 0.90752 1.25817 0.95101 0.95470 1.02297 1.70141 1.43685 1.17597 1.24569 0.85390 0.78742 0.78287 0.78292 1.20298 1.21253 1.18154 1.59098 1.11928 1.48718 0.98450 1.22363 0.83771 0.99978 1.04130 1.22936 1.01454 0.88637 0.86210 1.74693 1.21586 1.12289 1.12492 1.73806 1.20892 1.24546 0.97318 1.25030 1.00789 0.85369 0.96755 1.20529 0.97653 1.02161 0.81441 1.21379 0.94839 1.00402 0.96243 1.23334 0.98337 0.99993 0.96417 1.23346 0.95008 1.00861 0.98766 1.21424 0.98840 0.97285 0.95309 1.46379 1.49491 1.14191 1.06237 1.21728 0.96679 0.76217 1.03531 1.22361 0.99666 0.97036 1.02119 1.23213 1.01963 1.02247 0.92123 1.23040 1.03362 0.90616 1.02149 0.93174 0.95080 0.96216 0.92810 0.89671 0.88849 0.97019 0.85887 0.92453 0.89475 0.83596 0.83400 0.88817 0.92333 0.88070 0.85721 0.90904 0.86188 0.88478 0.88535 0.86496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -6.07 8.81 71.98 0.63 -5.43 16 2 C 0.24 13.11 1.60 44.17 0.07 13.18 16 3 H -0.02 -1.22 7.91 -2.38 -0.02 -1.24 16 4 C -0.53 -28.78 7.69 25.60 0.20 -28.58 16 5 H 0.07 3.85 6.63 -2.91 -0.02 3.83 16 6 C 0.01 0.71 5.22 84.66 0.44 1.15 16 7 N -0.92 -55.33 11.95 21.45 0.26 -55.07 16 8 Si 0.97 43.33 29.54 68.60 2.03 45.35 16 9 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 10 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 12 N -0.46 -20.49 4.63 -711.02 -3.29 -23.79 16 13 C 0.04 1.70 9.10 127.69 1.16 2.86 16 14 C 0.37 15.77 6.16 260.11 1.60 17.37 16 15 N -0.37 -18.12 9.91 -58.00 -0.57 -18.70 16 16 N -0.33 -14.05 11.78 -49.54 -0.58 -14.63 16 17 C 0.19 6.17 6.62 137.64 0.91 7.08 16 18 C 0.00 0.06 3.54 -10.42 -0.04 0.03 16 19 C -0.09 -1.93 6.37 30.53 0.19 -1.74 16 20 C -0.16 -2.71 10.78 26.26 0.28 -2.43 16 21 C -0.16 -2.60 10.78 26.26 0.28 -2.32 16 22 C -0.09 -1.79 6.37 30.54 0.19 -1.59 16 23 N -0.47 -15.26 2.81 -514.86 -1.45 -16.70 16 24 C 0.14 3.06 6.05 86.38 0.52 3.58 16 25 C -0.19 -4.05 6.01 -10.80 -0.06 -4.11 16 26 C -0.16 -2.14 10.18 30.59 0.31 -1.82 16 27 C -0.15 -2.26 10.25 30.60 0.31 -1.95 16 28 H 0.05 2.97 6.61 -2.39 -0.02 2.95 16 29 H 0.03 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.02 1.06 6.33 -2.38 -0.02 1.05 16 31 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 32 H 0.08 2.49 6.49 -2.39 -0.02 2.48 16 33 H 0.09 3.60 6.22 -2.39 -0.01 3.59 16 34 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 35 H 0.12 1.87 7.25 -2.38 -0.02 1.85 16 36 H 0.06 1.64 7.63 -2.38 -0.02 1.62 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 38 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 39 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 40 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.06 1.54 7.82 -2.39 -0.02 1.52 16 42 H 0.10 2.24 6.35 -2.39 -0.02 2.22 16 43 H 0.12 1.76 7.31 -2.39 -0.02 1.74 16 44 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 45 H 0.12 1.04 8.04 -2.39 -0.02 1.02 16 46 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -74.91 381.58 4.35 -70.56 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.94 Total: 17.70 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: 7.02 Total: -4.73 kcal Atomic # 7 Polarization: -123.25 SS G_CDS: -5.64 Total: -128.89 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -74.91 4.35 -70.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519636314.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.835 kcal (2) G-P(sol) polarization free energy of solvation -74.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds