Wall clock time and date at job start Tue Mar 31 2020 11:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47193 * 2 1 4 4 C 1.50703 * 109.46999 * 119.99673 * 2 1 3 5 5 H 1.07997 * 119.99656 * 119.99753 * 4 2 1 6 6 C 1.37874 * 119.99776 * 300.00377 * 4 2 1 7 7 N 1.31512 * 120.00507 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99896 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47388 * 89.99264 * 8 6 4 10 10 H 1.48499 * 109.47077 * 209.99955 * 8 6 4 11 11 H 1.48506 * 109.46776 * 329.99515 * 8 6 4 12 12 N 1.46896 * 109.47237 * 239.99674 * 2 1 3 13 13 C 1.46903 * 110.99805 * 183.95452 * 12 2 1 14 14 C 1.38582 * 110.99948 * 59.99876 * 12 2 1 15 15 N 1.31221 * 126.47333 * 0.02562 * 14 12 2 16 16 N 1.28530 * 109.85675 * 179.97438 * 15 14 12 17 17 C 1.30294 * 110.05622 * 359.97438 * 16 15 14 18 18 C 1.50699 * 126.34637 * 179.97438 * 17 16 15 19 19 C 1.54635 * 111.03688 * 55.35604 * 18 17 16 20 20 C 1.51170 * 104.69620 * 217.36346 * 19 18 17 21 21 C 1.30534 * 111.11582 * 16.38302 * 20 19 18 22 22 C 1.51100 * 111.10468 * 0.03275 * 21 20 19 23 23 N 1.36455 * 126.47252 * 179.97438 * 14 12 2 24 24 C 1.46499 * 127.13799 * 0.02562 * 23 14 12 25 25 C 1.53002 * 109.47243 * 270.00044 * 24 23 14 26 26 C 1.53003 * 117.49606 * 243.62223 * 25 24 23 27 27 C 1.52999 * 59.99955 * 252.51146 * 26 25 24 28 28 H 1.09002 * 109.47245 * 300.00307 * 1 2 3 29 29 H 1.09005 * 109.46906 * 60.00204 * 1 2 3 30 30 H 1.09003 * 109.47193 * 179.97438 * 1 2 3 31 31 H 0.97000 * 120.00430 * 180.02562 * 7 6 4 32 32 H 1.08996 * 109.47219 * 296.03945 * 13 12 2 33 33 H 1.08995 * 109.47289 * 56.05108 * 13 12 2 34 34 H 1.09004 * 109.46386 * 176.04690 * 13 12 2 35 35 H 1.08998 * 110.91493 * 179.32788 * 18 17 16 36 36 H 1.08996 * 110.38888 * 336.14361 * 19 18 17 37 37 H 1.09003 * 110.38759 * 98.52821 * 19 18 17 38 38 H 1.07996 * 124.43834 * 196.43455 * 20 19 18 39 39 H 1.08003 * 124.44335 * 180.02562 * 21 20 19 40 40 H 1.08999 * 110.38225 * 224.74810 * 22 21 20 41 41 H 1.08995 * 110.38050 * 102.37612 * 22 21 20 42 42 H 1.09003 * 109.46817 * 29.99739 * 24 23 14 43 43 H 1.08997 * 109.47115 * 149.99792 * 24 23 14 44 44 H 1.09000 * 115.54992 * 29.32324 * 25 24 23 45 45 H 1.08998 * 117.49868 * 359.97438 * 26 25 24 46 46 H 1.08996 * 117.49857 * 145.01644 * 26 25 24 47 47 H 1.09000 * 117.49502 * 252.51760 * 27 26 25 48 48 H 1.08990 * 117.50389 * 107.48987 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2392 2.4827 7 7 0.9434 0.8303 2.6034 8 14 2.3223 -1.1193 4.0081 9 1 3.6304 -0.5438 4.4120 10 1 1.3442 -0.9488 5.1123 11 1 2.4878 -2.5652 3.7123 12 7 2.0197 -0.6925 -1.1994 13 6 3.4851 -0.7945 -1.1869 14 6 1.5753 -0.0642 -2.3518 15 7 0.8189 1.0062 -2.4146 16 7 0.6008 1.3153 -3.6430 17 6 1.2005 0.4678 -4.4302 18 6 1.1879 0.4855 -5.9370 19 6 1.6786 1.8475 -6.4803 20 6 0.8145 2.1107 -7.6925 21 6 -0.2417 1.3437 -7.6926 22 6 -0.2592 0.4417 -6.4805 23 7 1.8425 -0.4413 -3.6358 24 6 2.6500 -1.5829 -4.0725 25 6 4.1089 -1.1476 -4.2240 26 6 4.7228 -1.2095 -5.6241 27 6 5.1374 -2.2290 -4.5612 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 0.7093 1.1619 3.4843 32 1 3.9192 0.2043 -1.2300 33 1 3.8070 -1.2915 -0.2718 34 1 3.8164 -1.3722 -2.0499 35 1 1.7824 -0.3340 -6.3408 36 1 1.5334 2.6286 -5.7341 37 1 2.7283 1.7859 -6.7676 38 1 1.0419 2.8374 -8.4584 39 1 -1.0032 1.3529 -8.4585 40 1 -0.5263 -0.5752 -6.7680 41 1 -0.9567 0.8220 -5.7344 42 1 2.5836 -2.3795 -3.3314 43 1 2.2777 -1.9460 -5.0304 44 1 4.4277 -0.3362 -3.5697 45 1 4.0874 -1.5608 -6.4371 46 1 5.4456 -0.4387 -5.8912 47 1 6.1330 -2.1288 -4.1290 48 1 4.7747 -3.2505 -4.6750 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519636318.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:17 Heat of formation + Delta-G solvation = 146.270635 kcal Electronic energy + Delta-G solvation = -27620.437013 eV Core-core repulsion = 24099.871477 eV Total energy + Delta-G solvation = -3520.565536 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.52817 -38.61053 -38.00258 -36.96563 -34.12599 -32.81383 -30.83738 -29.22097 -28.23733 -28.09602 -27.40337 -25.28223 -24.27814 -22.78313 -22.45561 -21.87200 -21.01852 -19.70038 -19.09682 -18.86289 -17.30047 -16.35623 -16.14819 -15.86866 -15.40613 -15.17327 -15.09854 -14.61081 -14.31848 -13.58576 -13.51532 -13.07658 -12.74852 -12.41034 -12.34432 -12.22569 -12.14997 -11.86026 -11.77171 -11.75595 -11.51023 -11.23237 -11.17598 -11.02627 -10.88745 -10.81079 -10.44735 -10.40512 -10.23880 -10.09385 -10.02207 -9.78175 -9.53976 -9.27716 -8.95171 -8.59472 -8.42487 -7.28976 -6.02967 -4.11033 2.15198 2.28398 2.64701 3.28145 3.35216 3.37753 3.43759 3.49300 4.26287 4.32942 4.40937 4.53328 4.58151 4.64046 4.68539 4.77224 4.85730 4.99436 5.16704 5.19019 5.28386 5.32079 5.36641 5.42027 5.57022 5.60516 5.67486 5.74330 5.76859 5.83022 5.88535 5.90773 5.91913 6.01344 6.13515 6.34234 6.41039 6.42482 6.51739 6.79417 6.95589 7.04079 7.23948 7.42349 7.48891 7.74940 7.75513 8.00954 8.31077 8.47828 8.90588 9.44057 9.53654 11.03041 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.016524 B = 0.003936 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.140923 B = 7111.331362 C = 8429.317637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.231 3.769 3 H 0.020 0.980 4 C -0.518 4.518 5 H 0.064 0.936 6 C 0.065 3.935 7 N -0.882 5.882 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.453 5.453 13 C 0.027 3.973 14 C 0.387 3.613 15 N -0.316 5.316 16 N -0.282 5.282 17 C 0.157 3.843 18 C 0.006 3.994 19 C -0.088 4.088 20 C -0.164 4.164 21 C -0.164 4.164 22 C -0.091 4.091 23 N -0.486 5.486 24 C 0.143 3.857 25 C -0.177 4.177 26 C -0.175 4.175 27 C -0.166 4.166 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.022 0.978 31 H 0.262 0.738 32 H 0.026 0.974 33 H 0.096 0.904 34 H 0.060 0.940 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.090 0.910 44 H 0.113 0.887 45 H 0.096 0.904 46 H 0.095 0.905 47 H 0.099 0.901 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.796 -4.406 -20.617 21.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.127 3.873 3 H 0.038 0.962 4 C -0.557 4.557 5 H 0.082 0.918 6 C -0.138 4.138 7 N -0.520 5.520 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.176 5.176 13 C -0.121 4.121 14 C 0.032 3.968 15 N -0.160 5.160 16 N -0.120 5.120 17 C -0.111 4.111 18 C -0.015 4.015 19 C -0.126 4.126 20 C -0.182 4.182 21 C -0.182 4.182 22 C -0.129 4.129 23 N -0.183 5.183 24 C 0.019 3.981 25 C -0.196 4.196 26 C -0.212 4.212 27 C -0.204 4.204 28 H 0.104 0.896 29 H 0.064 0.936 30 H 0.041 0.959 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.114 0.886 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.121 0.879 43 H 0.108 0.892 44 H 0.131 0.869 45 H 0.114 0.886 46 H 0.114 0.886 47 H 0.118 0.882 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.690 -3.598 -19.917 20.775 hybrid contribution 1.354 -0.948 0.562 1.746 sum 6.044 -4.546 -19.354 20.780 Atomic orbital electron populations 1.21969 0.96541 0.99206 1.02411 1.19355 0.93578 0.92296 0.82074 0.96244 1.21066 1.32206 1.12784 0.89617 0.91790 1.24893 0.94984 0.95024 0.98922 1.69928 1.35899 1.22543 1.23626 0.86495 0.78488 0.79931 0.82457 1.20707 1.21121 1.19847 1.59057 1.10511 1.48409 0.99653 1.22631 0.85428 1.00409 1.03591 1.23302 0.98126 0.91292 0.84087 1.74864 1.20124 1.10539 1.10513 1.73897 1.19599 1.21809 0.96724 1.24066 1.00259 0.91634 0.95093 1.20151 0.97877 0.99017 0.84496 1.21401 0.98872 0.96289 0.96020 1.23235 0.97109 0.99787 0.98086 1.23214 0.98434 0.98481 0.98067 1.21427 0.95902 0.99420 0.96119 1.46127 1.41325 1.24850 1.05997 1.21352 0.87848 0.87026 1.01833 1.22777 0.93439 1.03142 1.00253 1.23076 1.03747 1.02413 0.91975 1.22962 0.99321 0.95243 1.02855 0.89571 0.93560 0.95889 0.92746 0.95533 0.88573 0.92115 0.89379 0.89237 0.91136 0.85810 0.85795 0.91171 0.89173 0.87878 0.89195 0.86875 0.88605 0.88603 0.88247 0.88323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 8.77 37.16 0.33 -3.48 16 2 C 0.23 6.03 1.73 -68.87 -0.12 5.91 16 3 H 0.02 0.58 8.11 -51.93 -0.42 0.16 16 4 C -0.52 -13.98 7.88 -34.44 -0.27 -14.25 16 5 H 0.06 1.66 6.41 -52.49 -0.34 1.33 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.43 11.32 55.43 0.63 -24.80 16 8 Si 0.90 20.98 29.54 -169.99 -5.02 15.95 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 12 N -0.45 -9.94 4.69 -176.08 -0.83 -10.77 16 13 C 0.03 0.49 8.46 60.07 0.51 1.00 16 14 C 0.39 8.15 6.76 -318.87 -2.15 5.99 16 15 N -0.32 -7.37 9.00 30.32 0.27 -7.10 16 16 N -0.28 -5.79 11.79 32.99 0.39 -5.40 16 17 C 0.16 2.58 6.61 -154.02 -1.02 1.56 16 18 C 0.01 0.07 3.53 -90.05 -0.32 -0.25 16 19 C -0.09 -0.99 6.37 -26.79 -0.17 -1.16 16 20 C -0.16 -1.59 10.78 -35.67 -0.38 -1.97 16 21 C -0.16 -1.59 10.78 -35.70 -0.38 -1.98 16 22 C -0.09 -1.03 6.37 -26.83 -0.17 -1.20 16 23 N -0.49 -8.01 2.81 -114.08 -0.32 -8.33 16 24 C 0.14 1.71 5.28 -4.04 -0.02 1.69 16 25 C -0.18 -1.84 4.30 -90.62 -0.39 -2.23 16 26 C -0.18 -1.39 10.18 -26.73 -0.27 -1.67 16 27 C -0.17 -1.33 10.25 -26.73 -0.27 -1.60 16 28 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 29 H 0.05 1.22 5.43 -51.93 -0.28 0.93 16 30 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.10 1.84 6.10 -51.93 -0.32 1.52 16 34 H 0.06 0.90 3.77 -51.93 -0.20 0.71 16 35 H 0.09 0.87 7.07 -51.93 -0.37 0.50 16 36 H 0.09 1.22 7.71 -51.93 -0.40 0.82 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.09 1.24 7.74 -51.93 -0.40 0.84 16 42 H 0.10 1.28 7.57 -51.93 -0.39 0.89 16 43 H 0.09 0.85 7.01 -51.93 -0.36 0.49 16 44 H 0.11 1.44 7.07 -51.93 -0.37 1.07 16 45 H 0.10 0.65 8.03 -51.93 -0.42 0.24 16 46 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 373.32 15.07 5.63 5.63 Total: -1.00 -31.74 373.32 -11.98 -43.72 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -7.52 Total: 3.06 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -5.21 Total: -11.97 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: 0.14 Total: -56.39 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.74 -11.98 -43.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519636318.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.987 kcal (2) G-P(sol) polarization free energy of solvation -31.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds