Wall clock time and date at job start Tue Mar 31 2020 11:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47193 * 2 1 4 4 C 1.50703 * 109.46999 * 119.99673 * 2 1 3 5 5 H 1.07997 * 119.99656 * 119.99753 * 4 2 1 6 6 C 1.37874 * 119.99776 * 300.00377 * 4 2 1 7 7 N 1.31512 * 120.00507 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99896 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47388 * 89.99264 * 8 6 4 10 10 H 1.48499 * 109.47077 * 209.99955 * 8 6 4 11 11 H 1.48506 * 109.46776 * 329.99515 * 8 6 4 12 12 N 1.46896 * 109.47237 * 239.99674 * 2 1 3 13 13 C 1.46903 * 110.99805 * 183.95452 * 12 2 1 14 14 C 1.38582 * 110.99948 * 59.99876 * 12 2 1 15 15 N 1.31221 * 126.47333 * 0.02562 * 14 12 2 16 16 N 1.28530 * 109.85675 * 179.97438 * 15 14 12 17 17 C 1.30294 * 110.05622 * 359.97438 * 16 15 14 18 18 C 1.50699 * 126.34637 * 179.97438 * 17 16 15 19 19 C 1.54635 * 111.03688 * 55.35604 * 18 17 16 20 20 C 1.51170 * 104.69620 * 217.36346 * 19 18 17 21 21 C 1.30534 * 111.11582 * 16.38302 * 20 19 18 22 22 C 1.51100 * 111.10468 * 0.03275 * 21 20 19 23 23 N 1.36455 * 126.47252 * 179.97438 * 14 12 2 24 24 C 1.46499 * 127.13799 * 0.02562 * 23 14 12 25 25 C 1.53002 * 109.47243 * 270.00044 * 24 23 14 26 26 C 1.53003 * 117.49606 * 243.62223 * 25 24 23 27 27 C 1.52999 * 59.99955 * 252.51146 * 26 25 24 28 28 H 1.09002 * 109.47245 * 300.00307 * 1 2 3 29 29 H 1.09005 * 109.46906 * 60.00204 * 1 2 3 30 30 H 1.09003 * 109.47193 * 179.97438 * 1 2 3 31 31 H 0.97000 * 120.00430 * 180.02562 * 7 6 4 32 32 H 1.08996 * 109.47219 * 296.03945 * 13 12 2 33 33 H 1.08995 * 109.47289 * 56.05108 * 13 12 2 34 34 H 1.09004 * 109.46386 * 176.04690 * 13 12 2 35 35 H 1.08998 * 110.91493 * 179.32788 * 18 17 16 36 36 H 1.08996 * 110.38888 * 336.14361 * 19 18 17 37 37 H 1.09003 * 110.38759 * 98.52821 * 19 18 17 38 38 H 1.07996 * 124.43834 * 196.43455 * 20 19 18 39 39 H 1.08003 * 124.44335 * 180.02562 * 21 20 19 40 40 H 1.08999 * 110.38225 * 224.74810 * 22 21 20 41 41 H 1.08995 * 110.38050 * 102.37612 * 22 21 20 42 42 H 1.09003 * 109.46817 * 29.99739 * 24 23 14 43 43 H 1.08997 * 109.47115 * 149.99792 * 24 23 14 44 44 H 1.09000 * 115.54992 * 29.32324 * 25 24 23 45 45 H 1.08998 * 117.49868 * 359.97438 * 26 25 24 46 46 H 1.08996 * 117.49857 * 145.01644 * 26 25 24 47 47 H 1.09000 * 117.49502 * 252.51760 * 27 26 25 48 48 H 1.08990 * 117.50389 * 107.48987 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2392 2.4827 7 7 0.9434 0.8303 2.6034 8 14 2.3223 -1.1193 4.0081 9 1 3.6304 -0.5438 4.4120 10 1 1.3442 -0.9488 5.1123 11 1 2.4878 -2.5652 3.7123 12 7 2.0197 -0.6925 -1.1994 13 6 3.4851 -0.7945 -1.1869 14 6 1.5753 -0.0642 -2.3518 15 7 0.8189 1.0062 -2.4146 16 7 0.6008 1.3153 -3.6430 17 6 1.2005 0.4678 -4.4302 18 6 1.1879 0.4855 -5.9370 19 6 1.6786 1.8475 -6.4803 20 6 0.8145 2.1107 -7.6925 21 6 -0.2417 1.3437 -7.6926 22 6 -0.2592 0.4417 -6.4805 23 7 1.8425 -0.4413 -3.6358 24 6 2.6500 -1.5829 -4.0725 25 6 4.1089 -1.1476 -4.2240 26 6 4.7228 -1.2095 -5.6241 27 6 5.1374 -2.2290 -4.5612 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 0.7093 1.1619 3.4843 32 1 3.9192 0.2043 -1.2300 33 1 3.8070 -1.2915 -0.2718 34 1 3.8164 -1.3722 -2.0499 35 1 1.7824 -0.3340 -6.3408 36 1 1.5334 2.6286 -5.7341 37 1 2.7283 1.7859 -6.7676 38 1 1.0419 2.8374 -8.4584 39 1 -1.0032 1.3529 -8.4585 40 1 -0.5263 -0.5752 -6.7680 41 1 -0.9567 0.8220 -5.7344 42 1 2.5836 -2.3795 -3.3314 43 1 2.2777 -1.9460 -5.0304 44 1 4.4277 -0.3362 -3.5697 45 1 4.0874 -1.5608 -6.4371 46 1 5.4456 -0.4387 -5.8912 47 1 6.1330 -2.1288 -4.1290 48 1 4.7747 -3.2505 -4.6750 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001519636318.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:17 Heat of formation + Delta-G solvation = 130.549069 kcal Electronic energy + Delta-G solvation = -27621.118751 eV Core-core repulsion = 24099.871477 eV Total energy + Delta-G solvation = -3521.247274 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.99437 -39.60103 -38.94750 -38.52924 -35.46080 -34.75396 -32.08253 -31.19674 -29.42364 -29.10533 -28.51205 -27.22869 -26.01645 -23.98958 -23.33102 -23.16596 -22.28037 -20.94754 -20.53087 -19.63869 -18.71534 -18.12789 -17.36246 -17.08319 -16.73398 -16.66661 -16.29580 -15.90597 -15.68680 -15.13438 -14.88128 -14.52680 -14.03361 -13.77395 -13.69698 -13.36128 -13.03698 -12.99193 -12.98824 -12.83880 -12.75281 -12.69341 -12.52397 -12.36577 -12.24485 -12.21137 -12.04302 -12.02857 -12.00678 -11.50153 -11.41810 -11.02731 -10.96624 -10.91824 -10.57741 -10.42378 -9.75109 -8.99968 -8.13793 -6.30116 0.84303 1.32179 1.42920 1.44069 1.45094 1.56026 1.90881 2.40207 2.79181 2.95209 3.16828 3.24911 3.62234 3.67500 3.74215 3.77940 3.94074 4.01535 4.10794 4.12897 4.23060 4.34853 4.41588 4.43263 4.54425 4.56370 4.75518 4.78813 4.81506 4.81718 4.85738 4.90844 4.96797 5.00655 5.01805 5.07802 5.14486 5.17296 5.27527 5.28322 5.35765 5.40359 5.57685 5.64145 5.65551 5.94771 6.02161 6.05874 6.15656 6.58426 6.79696 7.38871 7.91681 8.92975 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.016524 B = 0.003936 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.140923 B = 7111.331362 C = 8429.317637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.243 3.757 3 H -0.028 1.028 4 C -0.529 4.529 5 H 0.074 0.926 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.971 3.029 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.261 1.261 12 N -0.453 5.453 13 C 0.032 3.968 14 C 0.366 3.634 15 N -0.367 5.367 16 N -0.327 5.327 17 C 0.186 3.814 18 C 0.004 3.996 19 C -0.088 4.088 20 C -0.163 4.163 21 C -0.163 4.163 22 C -0.092 4.092 23 N -0.476 5.476 24 C 0.135 3.865 25 C -0.202 4.202 26 C -0.158 4.158 27 C -0.152 4.152 28 H 0.060 0.940 29 H 0.043 0.957 30 H 0.020 0.980 31 H 0.263 0.737 32 H 0.010 0.990 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.123 0.877 36 H 0.057 0.943 37 H 0.090 0.910 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.090 0.910 41 H 0.058 0.942 42 H 0.099 0.901 43 H 0.125 0.875 44 H 0.084 0.916 45 H 0.117 0.883 46 H 0.099 0.901 47 H 0.102 0.898 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.467 -6.892 -23.585 25.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.138 3.862 3 H -0.011 1.011 4 C -0.568 4.568 5 H 0.092 0.908 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.796 3.204 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.185 1.185 12 N -0.177 5.177 13 C -0.114 4.114 14 C 0.009 3.991 15 N -0.211 5.211 16 N -0.164 5.164 17 C -0.083 4.083 18 C -0.017 4.017 19 C -0.127 4.127 20 C -0.181 4.181 21 C -0.180 4.180 22 C -0.130 4.130 23 N -0.171 5.171 24 C 0.014 3.986 25 C -0.222 4.222 26 C -0.195 4.195 27 C -0.189 4.189 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.039 0.961 31 H 0.072 0.928 32 H 0.029 0.971 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.141 0.859 36 H 0.075 0.925 37 H 0.108 0.892 38 H 0.165 0.835 39 H 0.165 0.835 40 H 0.109 0.891 41 H 0.076 0.924 42 H 0.117 0.883 43 H 0.143 0.857 44 H 0.102 0.898 45 H 0.135 0.865 46 H 0.117 0.883 47 H 0.121 0.879 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.384 -6.104 -22.925 24.568 hybrid contribution 0.856 -0.131 1.323 1.581 sum 7.240 -6.234 -21.602 23.621 Atomic orbital electron populations 1.21761 0.97382 0.98379 1.00994 1.18937 0.92858 0.90212 0.84206 1.01064 1.21369 1.32277 1.13006 0.90104 0.90777 1.25829 0.95004 0.95644 1.02289 1.70095 1.37154 1.24165 1.24337 0.85360 0.77892 0.79169 0.78022 1.19872 1.21147 1.18517 1.58974 1.12142 1.47766 0.98797 1.22689 0.83614 1.00061 1.05064 1.23138 0.98872 0.91720 0.85362 1.74691 1.21563 1.12317 1.12507 1.73800 1.22243 1.24052 0.96353 1.24977 0.97064 0.89497 0.96763 1.20504 0.99288 1.00833 0.81041 1.21386 1.00575 0.94706 0.95989 1.23359 0.96714 1.00228 0.97756 1.23339 0.98999 0.97966 0.97742 1.21425 0.94486 1.01026 0.96108 1.46331 1.41060 1.25605 1.04112 1.21771 0.88375 0.85219 1.03238 1.22559 0.92937 1.04169 1.02491 1.23201 1.03131 1.02091 0.91058 1.23086 0.98439 0.95522 1.01895 0.92130 0.93805 0.96108 0.92774 0.97095 0.89152 0.88175 0.85910 0.92485 0.89173 0.83526 0.83516 0.89122 0.92361 0.88302 0.85677 0.89753 0.86475 0.88294 0.87912 0.86644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.17 8.77 71.98 0.63 -6.54 16 2 C 0.24 13.44 1.73 44.17 0.08 13.52 16 3 H -0.03 -1.80 8.11 -2.39 -0.02 -1.82 16 4 C -0.53 -29.36 7.88 25.60 0.20 -29.15 16 5 H 0.07 3.87 6.41 -2.91 -0.02 3.86 16 6 C 0.01 0.66 5.30 84.65 0.45 1.11 16 7 N -0.92 -55.17 11.32 21.45 0.24 -54.92 16 8 Si 0.97 43.47 29.54 68.60 2.03 45.50 16 9 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 10 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 12 N -0.45 -20.66 4.69 -710.99 -3.33 -23.99 16 13 C 0.03 1.22 8.46 127.69 1.08 2.30 16 14 C 0.37 16.03 6.76 260.11 1.76 17.78 16 15 N -0.37 -18.21 9.00 -58.00 -0.52 -18.73 16 16 N -0.33 -14.10 11.79 -49.54 -0.58 -14.69 16 17 C 0.19 6.08 6.61 137.64 0.91 6.99 16 18 C 0.00 0.09 3.53 -10.43 -0.04 0.05 16 19 C -0.09 -1.82 6.37 30.55 0.19 -1.63 16 20 C -0.16 -2.68 10.78 26.28 0.28 -2.40 16 21 C -0.16 -2.68 10.78 26.25 0.28 -2.40 16 22 C -0.09 -1.91 6.37 30.53 0.19 -1.71 16 23 N -0.48 -15.49 2.81 -514.85 -1.44 -16.94 16 24 C 0.14 2.89 5.28 86.38 0.46 3.35 16 25 C -0.20 -3.71 4.30 -10.79 -0.05 -3.76 16 26 C -0.16 -1.85 10.18 30.59 0.31 -1.54 16 27 C -0.15 -1.86 10.25 30.59 0.31 -1.54 16 28 H 0.06 3.70 6.07 -2.39 -0.01 3.69 16 29 H 0.04 2.47 5.43 -2.38 -0.01 2.46 16 30 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 32 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.09 3.50 6.10 -2.39 -0.01 3.48 16 34 H 0.10 2.94 3.77 -2.38 -0.01 2.93 16 35 H 0.12 1.84 7.07 -2.39 -0.02 1.82 16 36 H 0.06 1.57 7.71 -2.39 -0.02 1.56 16 37 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 39 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 40 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.06 1.60 7.74 -2.39 -0.02 1.59 16 42 H 0.10 2.23 7.57 -2.39 -0.02 2.21 16 43 H 0.13 1.79 7.01 -2.39 -0.02 1.78 16 44 H 0.08 2.09 7.07 -2.39 -0.02 2.07 16 45 H 0.12 0.92 8.03 -2.39 -0.02 0.90 16 46 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -75.29 373.32 4.40 -70.89 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.95 Total: 18.46 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 7.06 Total: -5.57 kcal Atomic # 7 Polarization: -123.63 SS G_CDS: -5.64 Total: -129.27 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -75.29 4.40 -70.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519636318.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.436 kcal (2) G-P(sol) polarization free energy of solvation -75.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds