Wall clock time and date at job start Tue Mar 31 2020 11:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50701 * 119.99896 * 2 1 4 4 N 1.46900 * 109.47370 * 124.99972 * 3 2 1 5 5 C 1.46904 * 111.00057 * 66.04372 * 4 3 2 6 6 C 1.50696 * 109.47389 * 199.54039 * 5 4 3 7 7 C 1.31000 * 120.00044 * 123.39759 * 6 5 4 8 8 C 1.38578 * 111.00228 * 189.99717 * 4 3 2 9 9 N 1.31215 * 126.47564 * 293.90202 * 8 4 3 10 10 N 1.28527 * 109.86240 * 179.97438 * 9 8 4 11 11 C 1.30302 * 110.05191 * 359.71948 * 10 9 8 12 12 C 1.50698 * 126.34824 * 180.31382 * 11 10 9 13 13 H 1.09001 * 109.47263 * 180.14684 * 12 11 10 14 14 C 1.52999 * 109.46879 * 300.15157 * 12 11 10 15 15 C 1.53007 * 109.47172 * 60.14705 * 12 11 10 16 16 C 1.50691 * 109.47034 * 175.00056 * 15 12 11 17 17 H 1.08002 * 120.00149 * 0.02562 * 16 15 12 18 18 C 1.37883 * 119.99968 * 180.02562 * 16 15 12 19 19 N 1.31511 * 119.99995 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99964 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47417 * 89.99759 * 20 18 16 22 22 H 1.48497 * 109.46771 * 209.99716 * 20 18 16 23 23 H 1.48503 * 109.47118 * 329.99508 * 20 18 16 24 24 N 1.36454 * 126.47195 * 113.86900 * 8 4 3 25 25 C 1.46504 * 127.13600 * 0.02562 * 24 8 4 26 26 C 1.50696 * 109.46946 * 91.01250 * 25 24 8 27 27 C 1.31001 * 119.99889 * 125.57524 * 26 25 24 28 28 H 1.08003 * 120.00311 * 359.97438 * 1 2 3 29 29 H 1.08003 * 119.99876 * 180.02562 * 1 2 3 30 30 H 1.08003 * 120.00311 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.47330 * 4.99672 * 3 2 1 32 32 H 1.08999 * 109.46821 * 244.99826 * 3 2 1 33 33 H 1.08997 * 109.47020 * 319.54238 * 5 4 3 34 34 H 1.08997 * 109.47066 * 79.53717 * 5 4 3 35 35 H 1.08000 * 119.99959 * 303.40691 * 6 5 4 36 36 H 1.08003 * 120.00246 * 180.02562 * 7 6 5 37 37 H 1.08000 * 119.99997 * 0.02562 * 7 6 5 38 38 H 1.09001 * 109.47310 * 60.00199 * 14 12 11 39 39 H 1.09001 * 109.46975 * 180.02562 * 14 12 11 40 40 H 1.08999 * 109.46847 * 299.99538 * 14 12 11 41 41 H 1.09003 * 109.46887 * 295.00138 * 15 12 11 42 42 H 1.09004 * 109.46739 * 54.99910 * 15 12 11 43 43 H 0.96997 * 119.99993 * 180.02562 * 19 18 16 44 44 H 1.08999 * 109.47128 * 331.01463 * 25 24 8 45 45 H 1.08996 * 109.47296 * 211.01005 * 25 24 8 46 46 H 1.08001 * 120.00176 * 305.57311 * 26 25 24 47 47 H 1.08001 * 119.99748 * 180.02562 * 27 26 25 48 48 H 1.07998 * 120.00365 * 359.72136 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9962 1.3321 1.1345 5 6 4.0494 0.3205 0.9743 6 6 4.6821 0.0377 2.3124 7 6 4.7044 -1.1854 2.7811 8 6 3.5419 2.5952 1.2990 9 7 4.3480 3.2111 0.4667 10 7 4.6588 4.3671 0.9347 11 6 4.0694 4.5582 2.0811 12 6 4.1730 5.7890 2.9444 13 1 3.5710 5.6542 3.8431 14 6 5.6342 6.0141 3.3383 15 6 3.6620 7.0028 2.1656 16 6 3.6502 8.2098 3.0676 17 1 3.9751 8.1204 4.0937 18 6 3.2246 9.4285 2.5831 19 7 2.8294 9.5376 1.3335 20 14 3.2107 10.9250 3.7011 21 1 4.5174 11.6244 3.6084 22 1 2.1250 11.8467 3.2808 23 1 2.9787 10.4934 5.1030 24 7 3.3419 3.4338 2.3567 25 6 2.5141 3.1838 3.5394 26 6 3.3562 2.5512 4.6172 27 6 3.4086 3.0917 5.8093 28 1 -0.5401 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1317 0.0895 32 1 2.6212 1.4026 -0.9314 33 1 3.6148 -0.5967 0.5768 34 1 4.8078 0.6916 0.2849 35 1 5.1170 0.8435 2.8852 36 1 5.1575 -1.3880 3.7403 37 1 4.2697 -1.9912 2.2082 38 1 6.2361 6.1490 2.4397 39 1 5.7090 6.9041 3.9632 40 1 5.9982 5.1494 3.8932 41 1 4.3174 7.1911 1.3152 42 1 2.6510 6.8061 1.8086 43 1 2.5304 10.3951 0.9925 44 1 1.6971 2.5123 3.2757 45 1 2.1064 4.1267 3.9035 46 1 3.9166 1.6522 4.4068 47 1 4.0124 2.6385 6.5816 48 1 2.8518 3.9931 6.0185 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520271256.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:43 Heat of formation + Delta-G solvation = 144.798734 kcal Electronic energy + Delta-G solvation = -27046.349536 eV Core-core repulsion = 23525.720174 eV Total energy + Delta-G solvation = -3520.629363 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.62880 -38.35924 -36.10590 -35.12519 -34.46441 -33.08923 -32.54361 -32.04028 -28.65771 -26.98429 -26.88444 -26.69665 -24.73823 -24.05910 -21.97640 -21.23139 -20.34721 -19.91148 -19.68271 -18.85810 -17.14201 -16.60242 -16.31959 -16.11056 -15.60378 -15.39143 -14.67902 -14.58460 -14.38952 -14.03499 -13.61688 -13.48843 -13.31909 -13.13490 -12.81841 -12.43326 -12.36879 -11.90217 -11.77218 -11.63177 -11.36306 -11.29257 -11.08057 -11.05724 -10.91146 -10.80340 -10.50905 -10.38601 -10.00808 -9.87209 -9.78833 -9.69282 -9.60451 -9.52187 -9.11986 -8.74096 -8.39554 -8.35531 -6.00726 -4.04397 1.79275 1.90627 2.05213 2.23190 2.79262 3.30180 3.31285 3.37920 3.39536 3.88866 4.43436 4.49628 4.65912 4.75324 4.77477 4.82226 4.93283 5.00026 5.13735 5.17005 5.22154 5.34775 5.43375 5.47415 5.48694 5.54667 5.61969 5.66874 5.73206 5.85122 6.05189 6.10919 6.24032 6.29754 6.33672 6.36941 6.42490 6.44343 6.51532 6.54555 6.64167 6.70673 6.82948 6.92242 7.05621 7.46921 7.61792 7.78369 7.98508 8.34594 9.01164 9.19510 9.59194 11.10347 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.015670 B = 0.003533 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.479798 B = 7924.447065 C = 8532.695197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.148 4.148 3 C 0.091 3.909 4 N -0.453 5.453 5 C 0.086 3.914 6 C -0.140 4.140 7 C -0.185 4.185 8 C 0.318 3.682 9 N -0.312 5.312 10 N -0.287 5.287 11 C 0.222 3.778 12 C -0.001 4.001 13 H 0.071 0.929 14 C -0.124 4.124 15 C 0.038 3.962 16 C -0.520 4.520 17 H 0.058 0.942 18 C 0.060 3.940 19 N -0.890 5.890 20 Si 0.891 3.109 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.274 1.274 24 N -0.463 5.463 25 C 0.141 3.859 26 C -0.175 4.175 27 C -0.163 4.163 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.031 0.969 41 H 0.032 0.968 42 H 0.013 0.987 43 H 0.261 0.739 44 H 0.104 0.896 45 H 0.100 0.900 46 H 0.113 0.887 47 H 0.103 0.897 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.072 -21.830 4.340 22.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.166 4.166 3 C -0.036 4.036 4 N -0.178 5.178 5 C -0.040 4.040 6 C -0.158 4.158 7 C -0.222 4.222 8 C -0.038 4.038 9 N -0.156 5.156 10 N -0.126 5.126 11 C -0.045 4.045 12 C -0.022 4.022 13 H 0.090 0.910 14 C -0.182 4.182 15 C 0.000 4.000 16 C -0.559 4.559 17 H 0.077 0.923 18 C -0.142 4.142 19 N -0.529 5.529 20 Si 0.719 3.281 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.199 1.199 24 N -0.155 5.155 25 C 0.018 3.982 26 C -0.194 4.194 27 C -0.201 4.201 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.129 0.871 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.122 0.878 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.031 0.969 43 H 0.071 0.929 44 H 0.122 0.878 45 H 0.118 0.882 46 H 0.131 0.869 47 H 0.121 0.879 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.566 -21.561 3.386 21.881 hybrid contribution -0.543 0.681 1.047 1.362 sum -2.109 -20.880 4.434 21.450 Atomic orbital electron populations 1.23856 0.95724 1.02084 0.99890 1.22775 0.95905 0.97498 1.00430 1.21285 0.94234 0.96636 0.91408 1.58675 1.17012 0.98869 1.43203 1.21388 0.92383 0.94471 0.95752 1.22786 0.98590 0.97676 0.96767 1.23753 1.01439 0.96481 1.00561 1.22116 1.01142 0.92214 0.88322 1.74499 1.14156 1.02804 1.24179 1.74071 1.21835 1.09015 1.07644 1.25664 0.92710 0.89876 0.96225 1.19990 0.98491 0.88410 0.95345 0.91040 1.21654 0.94351 1.00573 1.01656 1.19109 0.96297 0.89026 0.95532 1.21133 1.43941 0.93442 0.97350 0.92340 1.25000 0.95321 0.98905 0.94995 1.69979 1.43681 1.25004 1.14228 0.86612 0.77740 0.82889 0.80860 1.20584 1.21298 1.19879 1.46379 1.37822 1.14050 1.17232 1.20879 0.92441 1.02301 0.82560 1.23070 1.00726 1.00680 0.94890 1.23975 0.99511 0.99847 0.96737 0.88391 0.88170 0.87106 0.89971 0.91947 0.89243 0.91533 0.87835 0.88424 0.88503 0.92108 0.90702 0.94996 0.94977 0.96871 0.92924 0.87828 0.88164 0.86902 0.87902 0.87745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.45 14.32 29.02 0.42 -1.03 16 2 C -0.15 -1.32 9.17 -36.02 -0.33 -1.65 16 3 C 0.09 1.06 5.34 -4.98 -0.03 1.03 16 4 N -0.45 -5.80 4.45 -177.25 -0.79 -6.59 16 5 C 0.09 0.97 5.27 -4.98 -0.03 0.94 16 6 C -0.14 -1.50 9.12 -36.03 -0.33 -1.83 16 7 C -0.18 -1.58 14.32 29.01 0.42 -1.16 16 8 C 0.32 5.25 6.01 -318.88 -1.92 3.33 16 9 N -0.31 -6.21 11.84 30.31 0.36 -5.85 16 10 N -0.29 -6.31 12.18 32.99 0.40 -5.91 16 11 C 0.22 4.44 6.58 -154.01 -1.01 3.43 16 12 C 0.00 -0.03 2.70 -91.77 -0.25 -0.27 16 13 H 0.07 1.35 6.96 -51.93 -0.36 0.99 16 14 C -0.12 -2.37 8.98 37.16 0.33 -2.04 16 15 C 0.04 0.99 4.43 -27.88 -0.12 0.86 16 16 C -0.52 -14.06 8.41 -34.44 -0.29 -14.35 16 17 H 0.06 1.50 7.06 -52.49 -0.37 1.13 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 20 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 N -0.46 -7.68 2.79 -115.37 -0.32 -8.00 16 25 C 0.14 1.83 6.31 -5.19 -0.03 1.80 16 26 C -0.17 -1.99 9.85 -36.03 -0.35 -2.34 16 27 C -0.16 -1.64 14.32 29.01 0.42 -1.23 16 28 H 0.10 0.82 7.84 -52.48 -0.41 0.41 16 29 H 0.10 0.66 8.06 -52.48 -0.42 0.23 16 30 H 0.11 0.84 6.74 -52.48 -0.35 0.49 16 31 H 0.08 1.05 7.71 -51.93 -0.40 0.65 16 32 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 33 H 0.09 0.78 5.78 -51.93 -0.30 0.48 16 34 H 0.07 0.86 7.68 -51.93 -0.40 0.46 16 35 H 0.10 1.30 7.02 -52.49 -0.37 0.93 16 36 H 0.10 0.74 8.06 -52.48 -0.42 0.32 16 37 H 0.10 0.69 7.84 -52.49 -0.41 0.28 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.07 1.43 6.95 -51.93 -0.36 1.07 16 40 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 44 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.10 1.30 6.91 -51.93 -0.36 0.94 16 46 H 0.11 1.29 6.70 -52.49 -0.35 0.94 16 47 H 0.10 0.88 8.06 -52.49 -0.42 0.46 16 48 H 0.10 1.03 7.84 -52.49 -0.41 0.62 16 LS Contribution 400.32 15.07 6.03 6.03 Total: -1.00 -31.99 400.32 -9.61 -41.59 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -7.80 Total: 1.45 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -3.21 Total: -12.94 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: 0.39 Total: -52.25 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.99 -9.61 -41.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520271256.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.391 kcal (2) G-P(sol) polarization free energy of solvation -31.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds