Wall clock time and date at job start Tue Mar 31 2020 11:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50701 * 119.99896 * 2 1 4 4 N 1.46900 * 109.47370 * 124.99972 * 3 2 1 5 5 C 1.46904 * 111.00057 * 66.04372 * 4 3 2 6 6 C 1.50696 * 109.47389 * 199.54039 * 5 4 3 7 7 C 1.31000 * 120.00044 * 123.39759 * 6 5 4 8 8 C 1.38578 * 111.00228 * 189.99717 * 4 3 2 9 9 N 1.31215 * 126.47564 * 293.90202 * 8 4 3 10 10 N 1.28527 * 109.86240 * 179.97438 * 9 8 4 11 11 C 1.30302 * 110.05191 * 359.71948 * 10 9 8 12 12 C 1.50698 * 126.34824 * 180.31382 * 11 10 9 13 13 H 1.09001 * 109.47263 * 180.14684 * 12 11 10 14 14 C 1.52999 * 109.46879 * 300.15157 * 12 11 10 15 15 C 1.53007 * 109.47172 * 60.14705 * 12 11 10 16 16 C 1.50691 * 109.47034 * 175.00056 * 15 12 11 17 17 H 1.08002 * 120.00149 * 0.02562 * 16 15 12 18 18 C 1.37883 * 119.99968 * 180.02562 * 16 15 12 19 19 N 1.31511 * 119.99995 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99964 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47417 * 89.99759 * 20 18 16 22 22 H 1.48497 * 109.46771 * 209.99716 * 20 18 16 23 23 H 1.48503 * 109.47118 * 329.99508 * 20 18 16 24 24 N 1.36454 * 126.47195 * 113.86900 * 8 4 3 25 25 C 1.46504 * 127.13600 * 0.02562 * 24 8 4 26 26 C 1.50696 * 109.46946 * 91.01250 * 25 24 8 27 27 C 1.31001 * 119.99889 * 125.57524 * 26 25 24 28 28 H 1.08003 * 120.00311 * 359.97438 * 1 2 3 29 29 H 1.08003 * 119.99876 * 180.02562 * 1 2 3 30 30 H 1.08003 * 120.00311 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.47330 * 4.99672 * 3 2 1 32 32 H 1.08999 * 109.46821 * 244.99826 * 3 2 1 33 33 H 1.08997 * 109.47020 * 319.54238 * 5 4 3 34 34 H 1.08997 * 109.47066 * 79.53717 * 5 4 3 35 35 H 1.08000 * 119.99959 * 303.40691 * 6 5 4 36 36 H 1.08003 * 120.00246 * 180.02562 * 7 6 5 37 37 H 1.08000 * 119.99997 * 0.02562 * 7 6 5 38 38 H 1.09001 * 109.47310 * 60.00199 * 14 12 11 39 39 H 1.09001 * 109.46975 * 180.02562 * 14 12 11 40 40 H 1.08999 * 109.46847 * 299.99538 * 14 12 11 41 41 H 1.09003 * 109.46887 * 295.00138 * 15 12 11 42 42 H 1.09004 * 109.46739 * 54.99910 * 15 12 11 43 43 H 0.96997 * 119.99993 * 180.02562 * 19 18 16 44 44 H 1.08999 * 109.47128 * 331.01463 * 25 24 8 45 45 H 1.08996 * 109.47296 * 211.01005 * 25 24 8 46 46 H 1.08001 * 120.00176 * 305.57311 * 26 25 24 47 47 H 1.08001 * 119.99748 * 180.02562 * 27 26 25 48 48 H 1.07998 * 120.00365 * 359.72136 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9962 1.3321 1.1345 5 6 4.0494 0.3205 0.9743 6 6 4.6821 0.0377 2.3124 7 6 4.7044 -1.1854 2.7811 8 6 3.5419 2.5952 1.2990 9 7 4.3480 3.2111 0.4667 10 7 4.6588 4.3671 0.9347 11 6 4.0694 4.5582 2.0811 12 6 4.1730 5.7890 2.9444 13 1 3.5710 5.6542 3.8431 14 6 5.6342 6.0141 3.3383 15 6 3.6620 7.0028 2.1656 16 6 3.6502 8.2098 3.0676 17 1 3.9751 8.1204 4.0937 18 6 3.2246 9.4285 2.5831 19 7 2.8294 9.5376 1.3335 20 14 3.2107 10.9250 3.7011 21 1 4.5174 11.6244 3.6084 22 1 2.1250 11.8467 3.2808 23 1 2.9787 10.4934 5.1030 24 7 3.3419 3.4338 2.3567 25 6 2.5141 3.1838 3.5394 26 6 3.3562 2.5512 4.6172 27 6 3.4086 3.0917 5.8093 28 1 -0.5401 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1317 0.0895 32 1 2.6212 1.4026 -0.9314 33 1 3.6148 -0.5967 0.5768 34 1 4.8078 0.6916 0.2849 35 1 5.1170 0.8435 2.8852 36 1 5.1575 -1.3880 3.7403 37 1 4.2697 -1.9912 2.2082 38 1 6.2361 6.1490 2.4397 39 1 5.7090 6.9041 3.9632 40 1 5.9982 5.1494 3.8932 41 1 4.3174 7.1911 1.3152 42 1 2.6510 6.8061 1.8086 43 1 2.5304 10.3951 0.9925 44 1 1.6971 2.5123 3.2757 45 1 2.1064 4.1267 3.9035 46 1 3.9166 1.6522 4.4068 47 1 4.0124 2.6385 6.5816 48 1 2.8518 3.9931 6.0185 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520271256.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:42 Heat of formation + Delta-G solvation = 128.764668 kcal Electronic energy + Delta-G solvation = -27047.044826 eV Core-core repulsion = 23525.720174 eV Total energy + Delta-G solvation = -3521.324652 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.05412 -39.38979 -37.36610 -36.76913 -35.23080 -34.37828 -33.95906 -33.38153 -30.16529 -28.85381 -27.82326 -27.73425 -25.96990 -25.70792 -23.72751 -22.34261 -21.22215 -20.90469 -20.78285 -20.07439 -18.66985 -18.21288 -17.53249 -17.26580 -16.61242 -16.53200 -16.35338 -15.69720 -15.53432 -15.44237 -15.01372 -14.63431 -14.30435 -14.28936 -13.99998 -13.74111 -13.67108 -13.40436 -12.99090 -12.81383 -12.74875 -12.67814 -12.58865 -12.43722 -12.27000 -12.15214 -11.98636 -11.84831 -11.64693 -11.46673 -11.19526 -11.05141 -10.65672 -10.55273 -10.51485 -10.39408 -9.96948 -9.75176 -8.16167 -6.28037 0.68077 0.84303 1.19943 1.41704 1.44225 1.45977 1.56246 1.69827 1.79604 2.43991 2.82563 3.18027 3.41547 3.65483 3.68144 3.81264 3.89848 3.93984 4.02112 4.09434 4.20854 4.28379 4.34840 4.41093 4.49465 4.53165 4.56638 4.62522 4.69120 4.74965 4.92463 4.99618 5.00220 5.03677 5.08075 5.15747 5.34671 5.44596 5.50777 5.53013 5.58033 5.64775 5.68012 5.68314 5.69055 5.81858 5.83001 5.83319 6.18791 6.22090 6.87561 7.41272 7.71520 8.96426 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.015670 B = 0.003533 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.479798 B = 7924.447065 C = 8532.695197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.154 4.154 3 C 0.090 3.910 4 N -0.444 5.444 5 C 0.089 3.911 6 C -0.169 4.169 7 C -0.153 4.153 8 C 0.341 3.659 9 N -0.350 5.350 10 N -0.328 5.328 11 C 0.207 3.793 12 C 0.011 3.989 13 H 0.092 0.908 14 C -0.116 4.116 15 C 0.051 3.949 16 C -0.528 4.528 17 H 0.077 0.923 18 C -0.002 4.002 19 N -0.937 5.937 20 Si 0.966 3.034 21 H -0.275 1.275 22 H -0.288 1.288 23 H -0.254 1.254 24 N -0.457 5.457 25 C 0.135 3.865 26 C -0.189 4.189 27 C -0.146 4.146 28 H 0.090 0.910 29 H 0.124 0.876 30 H 0.133 0.867 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.121 0.879 34 H 0.042 0.958 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.119 0.881 38 H 0.039 0.961 39 H 0.075 0.925 40 H 0.059 0.941 41 H -0.011 1.011 42 H -0.022 1.022 43 H 0.261 0.739 44 H 0.116 0.884 45 H 0.100 0.900 46 H 0.114 0.886 47 H 0.123 0.877 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.702 -24.146 7.191 25.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C -0.036 4.036 4 N -0.170 5.170 5 C -0.037 4.037 6 C -0.188 4.188 7 C -0.191 4.191 8 C -0.016 4.016 9 N -0.193 5.193 10 N -0.168 5.168 11 C -0.061 4.061 12 C -0.010 4.010 13 H 0.111 0.889 14 C -0.174 4.174 15 C 0.013 3.987 16 C -0.566 4.566 17 H 0.095 0.905 18 C -0.199 4.199 19 N -0.578 5.578 20 Si 0.791 3.209 21 H -0.201 1.201 22 H -0.214 1.214 23 H -0.177 1.177 24 N -0.149 5.149 25 C 0.014 3.986 26 C -0.207 4.207 27 C -0.184 4.184 28 H 0.109 0.891 29 H 0.142 0.858 30 H 0.151 0.849 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.139 0.861 34 H 0.061 0.939 35 H 0.098 0.902 36 H 0.128 0.872 37 H 0.137 0.863 38 H 0.058 0.942 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.007 0.993 42 H -0.004 1.004 43 H 0.070 0.930 44 H 0.134 0.866 45 H 0.118 0.882 46 H 0.131 0.869 47 H 0.141 0.859 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.196 -23.901 6.264 24.806 hybrid contribution -0.414 1.254 0.146 1.328 sum -2.610 -22.648 6.411 23.682 Atomic orbital electron populations 1.24049 0.95493 1.02925 0.98041 1.22695 0.96056 0.96471 1.01987 1.21305 0.93749 0.98108 0.90436 1.59026 1.17290 0.97129 1.43524 1.21470 0.91496 0.94726 0.96002 1.22591 1.01113 0.98151 0.96935 1.24003 0.98703 0.95808 1.00568 1.22524 0.98973 0.92898 0.87175 1.74406 1.16408 1.02798 1.25727 1.73953 1.23469 1.10396 1.08941 1.25378 0.93901 0.90821 0.96049 1.19730 0.99552 0.86547 0.95157 0.88944 1.21559 0.92998 1.01819 1.00985 1.18847 0.93467 0.91658 0.94736 1.21561 1.43067 0.93769 0.98155 0.90464 1.26015 0.94861 1.02603 0.96434 1.70153 1.45130 1.25858 1.16611 0.85424 0.77646 0.78400 0.79447 1.20064 1.21426 1.17726 1.46538 1.37256 1.12948 1.18143 1.21174 0.92716 1.02794 0.81889 1.22927 1.01695 1.01300 0.94814 1.24198 0.98367 0.99313 0.96516 0.89120 0.85759 0.84942 0.91748 0.93167 0.86144 0.93941 0.90162 0.87185 0.86328 0.94178 0.90569 0.92192 0.99255 1.00370 0.92984 0.86569 0.88199 0.86852 0.85862 0.87404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 14.32 67.79 0.97 -1.38 16 2 C -0.15 -2.45 9.17 25.65 0.24 -2.21 16 3 C 0.09 2.12 5.34 85.56 0.46 2.58 16 4 N -0.44 -11.30 4.45 -714.70 -3.18 -14.48 16 5 C 0.09 1.92 5.27 85.55 0.45 2.37 16 6 C -0.17 -3.41 9.12 25.65 0.23 -3.18 16 7 C -0.15 -2.13 14.32 67.78 0.97 -1.16 16 8 C 0.34 11.64 6.01 260.11 1.56 13.20 16 9 N -0.35 -14.74 11.84 -58.01 -0.69 -15.43 16 10 N -0.33 -15.39 12.18 -49.54 -0.60 -16.00 16 11 C 0.21 8.62 6.58 137.64 0.91 9.52 16 12 C 0.01 0.46 2.70 -11.54 -0.03 0.43 16 13 H 0.09 3.44 6.96 -2.39 -0.02 3.42 16 14 C -0.12 -4.42 8.98 71.98 0.65 -3.77 16 15 C 0.05 2.76 4.43 29.85 0.13 2.89 16 16 C -0.53 -28.87 8.41 25.60 0.22 -28.66 16 17 H 0.08 3.86 7.06 -2.91 -0.02 3.84 16 18 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 19 N -0.94 -58.10 13.29 21.45 0.28 -57.82 16 20 Si 0.97 43.40 29.54 68.60 2.03 45.43 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 22 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 23 H -0.25 -10.49 7.11 99.48 0.71 -9.78 16 24 N -0.46 -15.51 2.79 -518.91 -1.45 -16.95 16 25 C 0.14 3.41 6.31 85.63 0.54 3.96 16 26 C -0.19 -3.96 9.85 25.65 0.25 -3.71 16 27 C -0.15 -2.55 14.32 67.78 0.97 -1.58 16 28 H 0.09 1.41 7.84 -2.91 -0.02 1.39 16 29 H 0.12 1.19 8.06 -2.91 -0.02 1.17 16 30 H 0.13 1.55 6.74 -2.91 -0.02 1.53 16 31 H 0.06 1.71 7.71 -2.39 -0.02 1.69 16 32 H 0.05 1.29 8.12 -2.39 -0.02 1.27 16 33 H 0.12 1.80 5.78 -2.39 -0.01 1.79 16 34 H 0.04 1.13 7.68 -2.39 -0.02 1.11 16 35 H 0.08 2.00 7.02 -2.91 -0.02 1.98 16 36 H 0.11 1.28 8.06 -2.91 -0.02 1.26 16 37 H 0.12 1.16 7.84 -2.91 -0.02 1.14 16 38 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.08 2.85 6.95 -2.39 -0.02 2.84 16 40 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 41 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 42 H -0.02 -1.33 8.14 -2.38 -0.02 -1.34 16 43 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 44 H 0.12 2.59 8.14 -2.39 -0.02 2.58 16 45 H 0.10 2.51 6.91 -2.39 -0.02 2.49 16 46 H 0.11 2.40 6.70 -2.91 -0.02 2.38 16 47 H 0.12 1.67 8.06 -2.91 -0.02 1.64 16 48 H 0.11 1.82 7.84 -2.91 -0.02 1.80 16 Total: -1.00 -73.85 400.32 6.28 -67.57 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.91 Total: 18.01 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: 8.97 Total: -10.33 kcal Atomic # 7 Polarization: -115.04 SS G_CDS: -5.63 Total: -120.68 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -73.85 6.28 -67.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520271256.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.338 kcal (2) G-P(sol) polarization free energy of solvation -73.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds