Wall clock time and date at job start Tue Mar 31 2020 11:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 119.99514 * 2 1 4 4 N 1.46508 * 109.46951 * 125.00189 * 3 2 1 5 5 C 1.36737 * 127.13879 * 89.97518 * 4 3 2 6 6 C 1.50706 * 126.34417 * 359.97438 * 5 4 3 7 7 C 1.53000 * 109.47116 * 90.00190 * 6 5 4 8 8 C 1.50696 * 109.47110 * 179.97438 * 7 6 5 9 9 H 1.07997 * 120.00016 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99838 * 180.02562 * 8 7 6 11 11 N 1.31516 * 120.00069 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00113 * 180.02562 * 10 8 7 13 13 H 1.48511 * 109.47040 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47494 * 119.99367 * 12 10 8 15 15 H 1.48502 * 109.46977 * 240.00094 * 12 10 8 16 16 N 1.30294 * 107.30494 * 180.26173 * 5 4 3 17 17 N 1.28530 * 110.05192 * 359.55770 * 16 5 4 18 18 C 1.31212 * 109.85927 * 0.45384 * 17 16 5 19 19 N 1.38582 * 126.47143 * 179.73075 * 18 17 16 20 20 C 1.47450 * 110.99941 * 239.87197 * 19 18 17 21 21 C 1.54314 * 107.23113 * 123.25441 * 20 19 18 22 22 C 1.55142 * 103.02169 * 22.28586 * 21 20 19 23 23 H 1.09002 * 110.99102 * 82.43792 * 22 21 20 24 24 C 1.53004 * 110.99162 * 206.21584 * 22 21 20 25 25 C 1.53004 * 117.49592 * 247.29207 * 24 22 21 26 26 C 1.52999 * 117.49755 * 178.63184 * 24 22 21 27 27 C 1.47843 * 110.99847 * 0.71351 * 19 18 17 28 28 H 1.07996 * 120.00587 * 359.97438 * 1 2 3 29 29 H 1.07998 * 119.99457 * 179.97438 * 1 2 3 30 30 H 1.07996 * 120.00587 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47707 * 5.00058 * 3 2 1 32 32 H 1.08998 * 109.47179 * 244.99587 * 3 2 1 33 33 H 1.09000 * 109.46646 * 209.99603 * 6 5 4 34 34 H 1.09000 * 109.47248 * 330.00321 * 6 5 4 35 35 H 1.09000 * 109.47214 * 300.00167 * 7 6 5 36 36 H 1.09008 * 109.47142 * 59.99333 * 7 6 5 37 37 H 0.97000 * 119.99667 * 180.02562 * 11 10 8 38 38 H 1.08993 * 109.88469 * 242.66054 * 20 19 18 39 39 H 1.09002 * 109.88265 * 3.85049 * 20 19 18 40 40 H 1.09004 * 110.70269 * 140.66830 * 21 20 19 41 41 H 1.08994 * 110.70825 * 263.72509 * 21 20 19 42 42 H 1.09003 * 115.54863 * 32.96019 * 24 22 21 43 43 H 1.08994 * 117.49784 * 0.02562 * 25 24 22 44 44 H 1.09002 * 117.49144 * 145.02171 * 25 24 22 45 45 H 1.09001 * 117.49566 * 214.97435 * 26 24 22 46 46 H 1.08995 * 117.50037 * 359.97438 * 26 24 22 47 47 H 1.08999 * 110.37595 * 332.46833 * 27 19 18 48 48 H 1.09000 * 110.37533 * 94.81059 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 4.2911 0.9003 1.1439 6 6 5.0437 0.2997 -0.0154 7 6 5.7399 1.4118 -0.8026 8 6 6.4929 0.8111 -1.9615 9 1 6.4763 -0.2569 -2.1209 10 6 7.2032 1.6251 -2.8182 11 7 7.2230 2.9258 -2.6243 12 14 8.1361 0.8808 -4.2552 13 1 7.9547 -0.5932 -4.2529 14 1 7.6153 1.4420 -5.5276 15 1 9.5804 1.2015 -4.1271 16 7 4.7541 1.0987 2.3456 17 7 3.8473 1.6309 3.0849 18 6 2.7452 1.7930 2.3915 19 7 1.5539 2.3309 2.8519 20 6 0.4526 1.3581 2.7291 21 6 -0.1546 1.1751 4.1359 22 6 0.2640 2.4766 4.8693 23 1 -0.4181 3.2937 4.6345 24 6 0.3459 2.2520 6.3805 25 6 -0.6798 2.9720 7.2584 26 6 0.7791 3.4354 7.2481 27 6 1.6683 2.7361 4.2691 28 1 -0.5401 0.9352 0.0004 29 1 -0.5399 -0.9353 -0.0004 30 1 1.8501 -0.9352 -0.0004 31 1 1.3585 2.1317 0.0896 32 1 2.6212 1.4027 -0.9313 33 1 5.7893 -0.4014 0.3596 34 1 4.3465 -0.2257 -0.6681 35 1 4.9943 2.1130 -1.1775 36 1 6.4370 1.9373 -0.1498 37 1 7.7224 3.4984 -3.2273 38 1 -0.3050 1.7402 2.0450 39 1 0.8381 0.4058 2.3648 40 1 -1.2403 1.0966 4.0797 41 1 0.2688 0.2993 4.6275 42 1 0.6642 1.2569 6.6913 43 1 -1.4131 3.6052 6.7592 44 1 -1.0359 2.4506 8.1469 45 1 1.3821 3.2188 8.1300 46 1 1.0062 4.3738 6.7423 47 1 2.4167 2.1289 4.7782 48 1 1.9226 3.7935 4.3421 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520330679.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:31 Heat of formation + Delta-G solvation = 125.082254 kcal Electronic energy + Delta-G solvation = -26687.309680 eV Core-core repulsion = 23165.825347 eV Total energy + Delta-G solvation = -3521.484333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.62646 -39.58877 -37.06319 -36.13651 -34.11626 -32.75062 -32.33374 -31.03872 -29.20438 -28.10209 -26.69958 -25.22673 -23.59415 -22.66084 -22.22964 -21.67137 -20.52346 -20.40083 -20.17878 -19.54979 -17.31733 -16.61860 -16.43329 -16.07002 -15.63358 -15.37234 -14.93194 -14.50946 -14.39877 -13.95826 -13.66068 -13.58804 -13.16245 -12.98450 -12.62728 -12.59056 -12.24891 -12.15882 -11.90276 -11.79662 -11.65930 -11.54115 -11.31524 -11.11887 -11.00867 -10.86203 -10.65077 -10.46675 -10.34407 -10.14801 -9.99272 -9.87723 -9.74572 -9.67021 -9.26120 -9.19125 -8.40926 -7.87396 -6.04755 -4.08973 1.78435 2.18143 2.70016 3.28925 3.30902 3.36895 3.40331 3.46318 3.77980 4.26927 4.33856 4.41407 4.41763 4.61403 4.65893 4.71616 4.80233 4.90624 5.02136 5.09932 5.10128 5.25535 5.26416 5.31203 5.35818 5.38771 5.44806 5.47048 5.56901 5.61757 5.64054 5.67645 5.76174 5.84173 5.84960 5.93713 6.08633 6.22578 6.28141 6.33893 6.40246 6.50873 6.64074 6.71468 6.96811 7.46758 7.56841 7.70615 7.92981 8.30275 8.97514 9.25293 9.55667 11.06350 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.022272 B = 0.002858 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.865327 B = 9793.413175 C =10579.008712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.172 4.172 3 C 0.134 3.866 4 N -0.475 5.475 5 C 0.212 3.788 6 C -0.030 4.030 7 C 0.031 3.969 8 C -0.523 4.523 9 H 0.059 0.941 10 C 0.059 3.941 11 N -0.892 5.892 12 Si 0.894 3.106 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.283 1.283 16 N -0.295 5.295 17 N -0.325 5.325 18 C 0.336 3.664 19 N -0.444 5.444 20 C 0.040 3.960 21 C -0.131 4.131 22 C -0.066 4.066 23 H 0.086 0.914 24 C -0.142 4.142 25 C -0.179 4.179 26 C -0.177 4.177 27 C 0.063 3.937 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.117 0.883 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.014 0.986 36 H 0.026 0.974 37 H 0.261 0.739 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.082 0.918 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.033 -2.807 13.366 25.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.191 4.191 3 C 0.012 3.988 4 N -0.170 5.170 5 C -0.055 4.055 6 C -0.070 4.070 7 C -0.007 4.007 8 C -0.561 4.561 9 H 0.077 0.923 10 C -0.143 4.143 11 N -0.530 5.530 12 Si 0.722 3.278 13 H -0.196 1.196 14 H -0.210 1.210 15 H -0.209 1.209 16 N -0.133 5.133 17 N -0.169 5.169 18 C -0.021 4.021 19 N -0.168 5.168 20 C -0.088 4.088 21 C -0.170 4.170 22 C -0.085 4.085 23 H 0.105 0.895 24 C -0.161 4.161 25 C -0.216 4.216 26 C -0.214 4.214 27 C -0.064 4.064 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.135 0.865 31 H 0.116 0.884 32 H 0.132 0.868 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.032 0.968 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.090 0.910 42 H 0.123 0.877 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.113 0.887 46 H 0.115 0.885 47 H 0.101 0.899 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.103 -2.171 14.158 24.684 hybrid contribution -0.225 -0.781 -1.616 1.809 sum -20.328 -2.951 12.542 24.068 Atomic orbital electron populations 1.23939 0.95454 1.02387 0.98991 1.23209 0.96337 0.98486 1.01033 1.20980 0.92098 0.96710 0.89054 1.46158 1.12106 1.48945 1.09792 1.25548 0.81555 1.00369 0.98075 1.20427 0.97175 0.99993 0.89445 1.19076 0.95240 0.92205 0.94168 1.21173 1.30591 0.93653 1.10717 0.92262 1.25019 0.96499 0.94803 0.97986 1.69987 1.41883 1.03280 1.37877 0.86509 0.79763 0.79375 0.82196 1.19638 1.21038 1.20916 1.73991 1.22386 1.16342 1.00600 1.74430 0.97842 1.19523 1.25092 1.22560 0.94970 1.00816 0.83776 1.60262 0.99797 1.34965 1.21776 1.23204 0.92766 0.94585 0.98195 1.22806 1.01405 0.97956 0.94805 1.21896 0.96618 0.97811 0.92172 0.89535 1.22173 1.04707 0.97491 0.91704 1.23009 0.92647 1.03971 1.02006 1.22958 0.97370 0.98862 1.02177 1.23045 0.97219 1.02422 0.83676 0.88043 0.87751 0.86501 0.88351 0.86775 0.89364 0.91315 0.96792 0.95598 0.92915 0.89596 0.91428 0.90149 0.90951 0.87676 0.88799 0.88930 0.88701 0.88527 0.89933 0.89466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 12.41 29.01 0.36 -1.03 16 2 C -0.17 -1.86 8.30 -36.03 -0.30 -2.16 16 3 C 0.13 1.80 5.65 -5.19 -0.03 1.77 16 4 N -0.48 -8.15 2.74 -115.36 -0.32 -8.47 16 5 C 0.21 4.30 7.32 -154.01 -1.13 3.17 16 6 C -0.03 -0.63 5.36 -27.88 -0.15 -0.78 16 7 C 0.03 0.80 4.95 -27.89 -0.14 0.66 16 8 C -0.52 -14.34 9.11 -34.44 -0.31 -14.66 16 9 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 10 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 11 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 12 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 13 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 N -0.30 -6.56 12.18 32.99 0.40 -6.16 16 17 N -0.32 -6.62 10.72 30.31 0.32 -6.30 16 18 C 0.34 5.81 6.86 -318.88 -2.19 3.63 16 19 N -0.44 -6.01 5.22 -171.31 -0.89 -6.91 16 20 C 0.04 0.41 5.04 -2.83 -0.01 0.39 16 21 C -0.13 -1.11 6.41 -24.91 -0.16 -1.27 16 22 C -0.07 -0.58 3.17 -88.48 -0.28 -0.86 16 23 H 0.09 0.71 8.00 -51.93 -0.42 0.29 16 24 C -0.14 -1.14 5.17 -90.62 -0.47 -1.61 16 25 C -0.18 -1.21 10.20 -26.69 -0.27 -1.49 16 26 C -0.18 -1.35 10.11 -26.69 -0.27 -1.62 16 27 C 0.06 0.76 5.83 -2.30 -0.01 0.75 16 28 H 0.10 0.72 7.31 -52.49 -0.38 0.34 16 29 H 0.10 0.71 8.06 -52.49 -0.42 0.29 16 30 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 31 H 0.10 1.18 7.79 -51.93 -0.40 0.77 16 32 H 0.11 1.65 7.88 -51.93 -0.41 1.24 16 33 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 34 H 0.07 1.26 7.93 -51.93 -0.41 0.84 16 35 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.03 0.74 8.14 -51.92 -0.42 0.32 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 38 H 0.09 0.75 7.24 -51.93 -0.38 0.38 16 39 H 0.07 0.78 5.32 -51.93 -0.28 0.50 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.65 7.93 -51.93 -0.41 0.23 16 42 H 0.11 0.87 7.99 -51.93 -0.42 0.45 16 43 H 0.09 0.59 8.10 -51.93 -0.42 0.17 16 44 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.08 1.17 6.80 -51.93 -0.35 0.81 16 48 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 385.97 15.07 5.82 5.82 Total: -1.00 -32.77 385.97 -12.46 -45.23 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -8.05 Total: 0.00 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -5.46 Total: -13.53 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: 0.25 Total: -53.76 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.77 -12.46 -45.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520330679.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.314 kcal (2) G-P(sol) polarization free energy of solvation -32.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds