Wall clock time and date at job start Tue Mar 31 2020 11:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 119.99514 * 2 1 4 4 N 1.46508 * 109.46951 * 125.00189 * 3 2 1 5 5 C 1.36737 * 127.13879 * 89.97518 * 4 3 2 6 6 C 1.50706 * 126.34417 * 359.97438 * 5 4 3 7 7 C 1.53000 * 109.47116 * 90.00190 * 6 5 4 8 8 C 1.50696 * 109.47110 * 179.97438 * 7 6 5 9 9 H 1.07997 * 120.00016 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99838 * 180.02562 * 8 7 6 11 11 N 1.31516 * 120.00069 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00113 * 180.02562 * 10 8 7 13 13 H 1.48511 * 109.47040 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47494 * 119.99367 * 12 10 8 15 15 H 1.48502 * 109.46977 * 240.00094 * 12 10 8 16 16 N 1.30294 * 107.30494 * 180.26173 * 5 4 3 17 17 N 1.28530 * 110.05192 * 359.55770 * 16 5 4 18 18 C 1.31212 * 109.85927 * 0.45384 * 17 16 5 19 19 N 1.38582 * 126.47143 * 179.73075 * 18 17 16 20 20 C 1.47450 * 110.99941 * 239.87197 * 19 18 17 21 21 C 1.54314 * 107.23113 * 123.25441 * 20 19 18 22 22 C 1.55142 * 103.02169 * 22.28586 * 21 20 19 23 23 H 1.09002 * 110.99102 * 82.43792 * 22 21 20 24 24 C 1.53004 * 110.99162 * 206.21584 * 22 21 20 25 25 C 1.53004 * 117.49592 * 247.29207 * 24 22 21 26 26 C 1.52999 * 117.49755 * 178.63184 * 24 22 21 27 27 C 1.47843 * 110.99847 * 0.71351 * 19 18 17 28 28 H 1.07996 * 120.00587 * 359.97438 * 1 2 3 29 29 H 1.07998 * 119.99457 * 179.97438 * 1 2 3 30 30 H 1.07996 * 120.00587 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47707 * 5.00058 * 3 2 1 32 32 H 1.08998 * 109.47179 * 244.99587 * 3 2 1 33 33 H 1.09000 * 109.46646 * 209.99603 * 6 5 4 34 34 H 1.09000 * 109.47248 * 330.00321 * 6 5 4 35 35 H 1.09000 * 109.47214 * 300.00167 * 7 6 5 36 36 H 1.09008 * 109.47142 * 59.99333 * 7 6 5 37 37 H 0.97000 * 119.99667 * 180.02562 * 11 10 8 38 38 H 1.08993 * 109.88469 * 242.66054 * 20 19 18 39 39 H 1.09002 * 109.88265 * 3.85049 * 20 19 18 40 40 H 1.09004 * 110.70269 * 140.66830 * 21 20 19 41 41 H 1.08994 * 110.70825 * 263.72509 * 21 20 19 42 42 H 1.09003 * 115.54863 * 32.96019 * 24 22 21 43 43 H 1.08994 * 117.49784 * 0.02562 * 25 24 22 44 44 H 1.09002 * 117.49144 * 145.02171 * 25 24 22 45 45 H 1.09001 * 117.49566 * 214.97435 * 26 24 22 46 46 H 1.08995 * 117.50037 * 359.97438 * 26 24 22 47 47 H 1.08999 * 110.37595 * 332.46833 * 27 19 18 48 48 H 1.09000 * 110.37533 * 94.81059 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 4.2911 0.9003 1.1439 6 6 5.0437 0.2997 -0.0154 7 6 5.7399 1.4118 -0.8026 8 6 6.4929 0.8111 -1.9615 9 1 6.4763 -0.2569 -2.1209 10 6 7.2032 1.6251 -2.8182 11 7 7.2230 2.9258 -2.6243 12 14 8.1361 0.8808 -4.2552 13 1 7.9547 -0.5932 -4.2529 14 1 7.6153 1.4420 -5.5276 15 1 9.5804 1.2015 -4.1271 16 7 4.7541 1.0987 2.3456 17 7 3.8473 1.6309 3.0849 18 6 2.7452 1.7930 2.3915 19 7 1.5539 2.3309 2.8519 20 6 0.4526 1.3581 2.7291 21 6 -0.1546 1.1751 4.1359 22 6 0.2640 2.4766 4.8693 23 1 -0.4181 3.2937 4.6345 24 6 0.3459 2.2520 6.3805 25 6 -0.6798 2.9720 7.2584 26 6 0.7791 3.4354 7.2481 27 6 1.6683 2.7361 4.2691 28 1 -0.5401 0.9352 0.0004 29 1 -0.5399 -0.9353 -0.0004 30 1 1.8501 -0.9352 -0.0004 31 1 1.3585 2.1317 0.0896 32 1 2.6212 1.4027 -0.9313 33 1 5.7893 -0.4014 0.3596 34 1 4.3465 -0.2257 -0.6681 35 1 4.9943 2.1130 -1.1775 36 1 6.4370 1.9373 -0.1498 37 1 7.7224 3.4984 -3.2273 38 1 -0.3050 1.7402 2.0450 39 1 0.8381 0.4058 2.3648 40 1 -1.2403 1.0966 4.0797 41 1 0.2688 0.2993 4.6275 42 1 0.6642 1.2569 6.6913 43 1 -1.4131 3.6052 6.7592 44 1 -1.0359 2.4506 8.1469 45 1 1.3821 3.2188 8.1300 46 1 1.0062 4.3738 6.7423 47 1 2.4167 2.1289 4.7782 48 1 1.9226 3.7935 4.3421 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520330679.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:30 Heat of formation + Delta-G solvation = 108.890185 kcal Electronic energy + Delta-G solvation = -26688.011821 eV Core-core repulsion = 23165.825347 eV Total energy + Delta-G solvation = -3522.186474 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.05651 -40.48223 -37.83788 -37.25077 -35.99210 -33.99446 -33.80963 -32.42083 -30.09888 -29.66429 -27.80141 -27.09534 -24.55433 -23.89232 -23.16451 -22.82887 -21.69325 -21.57159 -21.04245 -20.64728 -18.65986 -18.33590 -17.64386 -17.24729 -16.74669 -16.45909 -16.14153 -15.95332 -15.26249 -15.19612 -14.84965 -14.63005 -14.53031 -14.34253 -14.20749 -13.56004 -13.42601 -13.28306 -13.00959 -12.90395 -12.73134 -12.57518 -12.47702 -12.41579 -12.33965 -12.19024 -12.09488 -11.82299 -11.65000 -11.46958 -11.28750 -11.14362 -11.07149 -10.83864 -10.61974 -10.59520 -10.43951 -9.26120 -8.21372 -6.34120 0.75175 0.91544 1.41783 1.43309 1.55877 1.57383 1.79883 2.41127 2.67429 2.83976 3.12775 3.38886 3.55840 3.61055 3.63060 3.72401 3.79786 3.99358 4.06530 4.12512 4.15643 4.26074 4.34730 4.36179 4.50546 4.51963 4.54379 4.58720 4.63248 4.79608 4.83894 4.85093 4.87375 4.90618 4.92627 5.02222 5.06792 5.09199 5.21678 5.31094 5.40590 5.42445 5.47904 5.54494 5.56681 5.60685 5.65989 5.77201 6.13458 6.18903 6.82043 7.36074 7.74964 8.91081 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.022272 B = 0.002858 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.865327 B = 9793.413175 C =10579.008712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.201 4.201 3 C 0.131 3.869 4 N -0.471 5.471 5 C 0.196 3.804 6 C -0.012 4.012 7 C 0.044 3.956 8 C -0.537 4.537 9 H 0.073 0.927 10 C -0.001 4.001 11 N -0.935 5.935 12 Si 0.970 3.030 13 H -0.256 1.256 14 H -0.277 1.277 15 H -0.283 1.283 16 N -0.332 5.332 17 N -0.362 5.362 18 C 0.352 3.648 19 N -0.445 5.445 20 C 0.037 3.963 21 C -0.124 4.124 22 C -0.052 4.052 23 H 0.101 0.899 24 C -0.152 4.152 25 C -0.161 4.161 26 C -0.189 4.189 27 C 0.059 3.941 28 H 0.119 0.881 29 H 0.126 0.874 30 H 0.108 0.892 31 H 0.115 0.885 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.094 0.906 35 H -0.007 1.007 36 H -0.019 1.019 37 H 0.263 0.737 38 H 0.112 0.888 39 H 0.058 0.942 40 H 0.111 0.889 41 H 0.064 0.936 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.102 0.898 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.058 0.942 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.358 -3.958 12.843 27.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.220 4.220 3 C 0.010 3.990 4 N -0.165 5.165 5 C -0.074 4.074 6 C -0.052 4.052 7 C 0.005 3.995 8 C -0.575 4.575 9 H 0.091 0.909 10 C -0.199 4.199 11 N -0.575 5.575 12 Si 0.794 3.206 13 H -0.179 1.179 14 H -0.203 1.203 15 H -0.209 1.209 16 N -0.170 5.170 17 N -0.206 5.206 18 C -0.006 4.006 19 N -0.169 5.169 20 C -0.089 4.089 21 C -0.162 4.162 22 C -0.071 4.071 23 H 0.119 0.881 24 C -0.170 4.170 25 C -0.198 4.198 26 C -0.226 4.226 27 C -0.068 4.068 28 H 0.137 0.863 29 H 0.144 0.856 30 H 0.126 0.874 31 H 0.133 0.867 32 H 0.115 0.885 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.011 0.989 36 H -0.001 1.001 37 H 0.072 0.928 38 H 0.130 0.870 39 H 0.076 0.924 40 H 0.130 0.870 41 H 0.083 0.917 42 H 0.118 0.882 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.112 0.888 46 H 0.112 0.888 47 H 0.076 0.924 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -23.465 -3.341 13.636 27.344 hybrid contribution 0.679 -0.334 -1.389 1.581 sum -22.786 -3.675 12.248 26.129 Atomic orbital electron populations 1.24241 0.94278 1.04248 0.94240 1.22943 0.97157 0.96564 1.05298 1.21218 0.91640 0.99162 0.86950 1.46328 1.11558 1.48013 1.10646 1.25287 0.83054 1.01527 0.97507 1.20105 0.97444 0.98170 0.89501 1.18832 0.93980 0.92999 0.93668 1.21610 1.30515 0.94412 1.10980 0.90897 1.26026 0.97524 0.95127 1.01179 1.70139 1.43062 1.05012 1.39335 0.85328 0.77805 0.79252 0.78230 1.17907 1.20271 1.20895 1.73870 1.23950 1.17471 1.01758 1.74337 0.98907 1.21462 1.25902 1.22983 0.95483 0.98523 0.83565 1.60457 0.98785 1.35267 1.22393 1.23389 0.91870 0.93496 1.00163 1.22812 1.03054 0.97250 0.93073 1.21829 0.94236 0.98562 0.92453 0.88068 1.22136 1.06137 0.97388 0.91371 1.23080 0.91994 1.02988 1.01725 1.23009 0.98709 0.98649 1.02238 1.23095 0.99130 1.01499 0.83044 0.86269 0.85554 0.87404 0.86725 0.88528 0.89443 0.88785 0.98891 1.00057 0.92778 0.87009 0.92376 0.87025 0.91684 0.88191 0.87695 0.87915 0.88756 0.88842 0.92392 0.90063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 12.41 67.78 0.84 -0.83 16 2 C -0.20 -3.99 8.30 25.65 0.21 -3.78 16 3 C 0.13 3.46 5.65 85.63 0.48 3.94 16 4 N -0.47 -16.52 2.74 -518.89 -1.42 -17.94 16 5 C 0.20 8.29 7.32 137.64 1.01 9.30 16 6 C -0.01 -0.53 5.36 29.85 0.16 -0.37 16 7 C 0.04 2.34 4.95 29.85 0.15 2.49 16 8 C -0.54 -29.99 9.11 25.60 0.23 -29.76 16 9 H 0.07 3.79 7.74 -2.91 -0.02 3.77 16 10 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 11 N -0.94 -57.63 13.29 21.45 0.28 -57.34 16 12 Si 0.97 43.78 29.54 68.60 2.03 45.81 16 13 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 14 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 15 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 16 N -0.33 -15.61 12.18 -49.53 -0.60 -16.21 16 17 N -0.36 -15.50 10.72 -58.01 -0.62 -16.12 16 18 C 0.35 12.44 6.86 260.11 1.78 14.22 16 19 N -0.44 -11.68 5.22 -695.90 -3.63 -15.31 16 20 C 0.04 0.66 5.04 86.64 0.44 1.10 16 21 C -0.12 -1.71 6.41 31.77 0.20 -1.50 16 22 C -0.05 -0.80 3.17 -9.41 -0.03 -0.83 16 23 H 0.10 1.31 8.00 -2.39 -0.02 1.29 16 24 C -0.15 -2.19 5.17 -10.79 -0.06 -2.25 16 25 C -0.16 -1.77 10.20 30.62 0.31 -1.46 16 26 C -0.19 -2.72 10.11 30.62 0.31 -2.41 16 27 C 0.06 1.41 5.83 86.77 0.51 1.92 16 28 H 0.12 1.11 7.31 -2.91 -0.02 1.09 16 29 H 0.13 1.13 8.06 -2.91 -0.02 1.10 16 30 H 0.11 2.35 8.06 -2.91 -0.02 2.32 16 31 H 0.11 2.56 7.79 -2.39 -0.02 2.54 16 32 H 0.10 2.86 7.88 -2.39 -0.02 2.84 16 33 H 0.09 3.71 8.14 -2.39 -0.02 3.69 16 34 H 0.09 3.48 7.93 -2.39 -0.02 3.46 16 35 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 36 H -0.02 -1.18 8.14 -2.38 -0.02 -1.20 16 37 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 38 H 0.11 1.46 7.24 -2.39 -0.02 1.44 16 39 H 0.06 1.21 5.32 -2.39 -0.01 1.19 16 40 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.06 1.02 7.93 -2.39 -0.02 1.00 16 42 H 0.10 1.56 7.99 -2.39 -0.02 1.54 16 43 H 0.10 0.95 8.10 -2.39 -0.02 0.93 16 44 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.06 1.71 6.80 -2.39 -0.02 1.69 16 48 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -75.16 385.97 3.97 -71.19 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.93 Total: 15.73 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: 7.02 Total: -9.79 kcal Atomic # 7 Polarization: -116.94 SS G_CDS: -6.00 Total: -122.93 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -75.16 3.97 -71.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520330679.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.077 kcal (2) G-P(sol) polarization free energy of solvation -75.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds