Wall clock time and date at job start Tue Mar 31 2020 11:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50696 * 120.00241 * 2 1 4 4 N 1.46509 * 109.46938 * 126.35892 * 3 2 1 5 5 C 1.36455 * 127.13591 * 94.54816 * 4 3 2 6 6 N 1.38582 * 126.47310 * 0.02562 * 5 4 3 7 7 C 1.46827 * 111.00024 * 284.77832 * 6 5 4 8 8 C 1.53294 * 109.40079 * 170.24993 * 7 6 5 9 9 C 1.51431 * 108.24351 * 53.78758 * 8 7 6 10 10 C 1.31008 * 121.10849 * 130.95276 * 9 8 7 11 11 C 1.51429 * 117.77956 * 310.97826 * 9 8 7 12 12 C 1.46830 * 111.00007 * 160.09183 * 6 5 4 13 13 N 1.31216 * 107.05280 * 179.97438 * 5 4 3 14 14 N 1.28534 * 109.86031 * 359.73091 * 13 5 4 15 15 C 1.30299 * 110.05012 * 0.45072 * 14 13 5 16 16 C 1.50701 * 126.34421 * 179.82162 * 15 14 13 17 17 C 1.52996 * 109.47059 * 118.82151 * 16 15 14 18 18 C 1.53002 * 109.47148 * 358.82201 * 16 15 14 19 19 C 1.50702 * 109.47216 * 238.82348 * 16 15 14 20 20 H 1.08001 * 119.99656 * 359.97438 * 19 16 15 21 21 C 1.37869 * 120.00042 * 180.27897 * 19 16 15 22 22 N 1.31518 * 120.00256 * 359.71725 * 21 19 16 23 23 Si 1.86798 * 120.00180 * 179.72437 * 21 19 16 24 24 H 1.48503 * 109.47406 * 59.99381 * 23 21 19 25 25 H 1.48496 * 109.47488 * 179.97438 * 23 21 19 26 26 H 1.48508 * 109.47001 * 299.99909 * 23 21 19 27 27 H 1.08001 * 120.00190 * 179.97438 * 1 2 3 28 28 H 1.07996 * 119.99630 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.99700 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.47280 * 6.36185 * 3 2 1 31 31 H 1.08999 * 109.47379 * 246.35558 * 3 2 1 32 32 H 1.09003 * 109.48266 * 290.23028 * 7 6 5 33 33 H 1.08997 * 109.48521 * 50.26785 * 7 6 5 34 34 H 1.09007 * 109.70786 * 294.10137 * 8 7 6 35 35 H 1.08998 * 109.71462 * 173.48011 * 8 7 6 36 36 H 1.07996 * 119.99856 * 180.02562 * 10 9 8 37 37 H 1.08001 * 119.99903 * 0.02711 * 10 9 8 38 38 H 1.09007 * 109.70962 * 289.33455 * 11 9 8 39 39 H 1.09009 * 109.71012 * 168.71558 * 11 9 8 40 40 H 1.09006 * 109.48073 * 309.72858 * 12 6 5 41 41 H 1.09000 * 109.48227 * 69.75671 * 12 6 5 42 42 H 1.08998 * 109.47195 * 187.66315 * 17 16 15 43 43 H 1.09000 * 109.47013 * 307.66275 * 17 16 15 44 44 H 1.09002 * 109.47377 * 67.66407 * 17 16 15 45 45 H 1.09004 * 109.47119 * 299.99892 * 18 16 15 46 46 H 1.09000 * 109.47101 * 59.99545 * 18 16 15 47 47 H 1.08999 * 109.47244 * 180.02562 * 18 16 15 48 48 H 0.96998 * 119.99896 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0168 1.3184 1.1124 5 6 4.3351 0.9683 1.0718 6 7 5.0367 0.5280 -0.0392 7 6 4.6903 -0.8615 -0.3636 8 6 5.2914 -1.2317 -1.7243 9 6 6.7749 -0.9302 -1.6851 10 6 7.6562 -1.8154 -2.0802 11 6 7.2057 0.4283 -1.1733 12 6 6.4830 0.6930 0.1524 13 7 4.8131 1.1282 2.2833 14 7 3.8872 1.5565 3.0651 15 6 2.7703 1.6850 2.4064 16 6 1.4527 2.1564 2.9657 17 6 1.0197 3.4336 2.2432 18 6 1.6066 2.4433 4.4607 19 6 0.4101 1.0871 2.7642 20 1 0.6750 0.1592 2.2793 21 6 -0.8834 1.2959 3.1933 22 7 -1.2061 2.4261 3.7835 23 14 -2.1776 -0.0264 2.9367 24 1 -1.7629 -1.2678 3.6382 25 1 -3.4771 0.4400 3.4835 26 1 -2.3216 -0.3029 1.4847 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5399 0.9353 -0.0004 29 1 1.8499 -0.9353 -0.0004 30 1 1.3607 2.1304 0.1139 31 1 2.6021 1.4136 -0.9414 32 1 5.0908 -1.5246 0.4033 33 1 3.6061 -0.9659 -0.4046 34 1 4.8170 -0.6417 -2.5085 35 1 5.1370 -2.2932 -1.9179 36 1 8.7099 -1.5815 -2.0442 37 1 7.3289 -2.7789 -2.4421 38 1 6.9368 1.1965 -1.8984 39 1 8.2838 0.4355 -1.0121 40 1 6.6921 1.7102 0.4837 41 1 6.8330 -0.0136 0.9050 42 1 0.1408 3.8495 2.7358 43 1 1.8311 4.1608 2.2730 44 1 0.7786 3.2004 1.2060 45 1 1.9152 1.5334 4.9754 46 1 2.3608 3.2167 4.6064 47 1 0.6536 2.7838 4.8653 48 1 -2.1162 2.5731 4.0851 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520448497.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:18 Heat of formation + Delta-G solvation = 128.178075 kcal Electronic energy + Delta-G solvation = -28224.492056 eV Core-core repulsion = 24703.141967 eV Total energy + Delta-G solvation = -3521.350088 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.24626 -38.97995 -36.15606 -35.26595 -34.37129 -32.17253 -31.33875 -31.28677 -29.03933 -27.08798 -26.23086 -25.69362 -25.16118 -23.71102 -22.42254 -21.81984 -20.62058 -19.47698 -19.06158 -18.24705 -17.00840 -16.34521 -15.68203 -15.51923 -15.03135 -14.95097 -14.73091 -14.46737 -14.12674 -13.66325 -13.45357 -13.29194 -13.24093 -12.64010 -12.47711 -12.22582 -12.01666 -11.57442 -11.44066 -11.42595 -11.10949 -11.05408 -11.01527 -10.91161 -10.68398 -10.59092 -10.49699 -10.33830 -10.15075 -9.80578 -9.70481 -9.45932 -9.26415 -9.16952 -8.88535 -8.56227 -8.44777 -7.68966 -6.09991 -4.18726 2.07753 2.38117 2.63384 3.10764 3.18939 3.28220 3.30290 3.69386 4.08555 4.31616 4.52318 4.59966 4.96577 5.08082 5.14230 5.17647 5.19563 5.30325 5.31015 5.40048 5.49721 5.53851 5.59720 5.65731 5.72367 5.79427 5.84786 5.93333 6.00061 6.08816 6.19589 6.26371 6.43499 6.57454 6.66865 6.72103 6.77460 6.85333 6.93395 6.99024 7.07397 7.14772 7.28484 7.33232 7.52111 7.62899 7.85147 7.92314 8.07658 8.25364 8.78596 9.45315 9.62321 10.92368 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.019661 B = 0.004401 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.784117 B = 6360.379356 C = 7244.514347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.189 4.189 3 C 0.147 3.853 4 N -0.462 5.462 5 C 0.312 3.688 6 N -0.453 5.453 7 C 0.058 3.942 8 C -0.080 4.080 9 C -0.118 4.118 10 C -0.200 4.200 11 C -0.083 4.083 12 C 0.079 3.921 13 N -0.328 5.328 14 N -0.315 5.315 15 C 0.251 3.749 16 C 0.145 3.855 17 C -0.129 4.129 18 C -0.116 4.116 19 C -0.507 4.507 20 H 0.065 0.935 21 C 0.074 3.926 22 N -0.883 5.883 23 Si 0.884 3.116 24 H -0.279 1.279 25 H -0.288 1.288 26 H -0.269 1.269 27 H 0.093 0.907 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.052 0.948 42 H 0.093 0.907 43 H 0.012 0.988 44 H 0.031 0.969 45 H 0.033 0.967 46 H 0.017 0.983 47 H 0.088 0.912 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.663 -4.452 -12.980 16.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.208 4.208 3 C 0.024 3.976 4 N -0.154 5.154 5 C -0.045 4.045 6 N -0.177 5.177 7 C -0.070 4.070 8 C -0.117 4.117 9 C -0.118 4.118 10 C -0.237 4.237 11 C -0.121 4.121 12 C -0.048 4.048 13 N -0.173 5.173 14 N -0.153 5.153 15 C -0.017 4.017 16 C 0.142 3.858 17 C -0.187 4.187 18 C -0.175 4.175 19 C -0.546 4.546 20 H 0.083 0.917 21 C -0.129 4.129 22 N -0.521 5.521 23 Si 0.712 3.288 24 H -0.205 1.205 25 H -0.214 1.214 26 H -0.194 1.194 27 H 0.111 0.889 28 H 0.125 0.875 29 H 0.118 0.882 30 H 0.125 0.875 31 H 0.107 0.893 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.071 0.929 42 H 0.112 0.888 43 H 0.031 0.969 44 H 0.050 0.950 45 H 0.052 0.948 46 H 0.036 0.964 47 H 0.106 0.894 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.379 -4.046 -12.154 15.877 hybrid contribution -1.391 -1.393 -0.569 2.049 sum 7.988 -5.439 -12.723 15.977 Atomic orbital electron populations 1.23840 0.95452 1.02139 0.94785 1.22715 0.96180 0.96929 1.04977 1.20929 0.91051 0.98227 0.87370 1.46158 1.08242 1.50053 1.10968 1.22222 0.84165 1.06245 0.91818 1.58324 1.07506 1.21127 1.30771 1.22344 1.01366 0.86603 0.96648 1.20891 0.92469 1.01337 0.97046 1.22021 0.95447 0.96098 0.98208 1.23580 0.98674 0.98794 1.02624 1.20954 0.99490 0.94844 0.96775 1.21951 0.83681 1.02906 0.96258 1.74432 1.25275 1.20079 0.97467 1.73992 0.96908 1.19772 1.24671 1.26090 0.99002 0.97306 0.79285 1.16913 0.82300 0.93829 0.92788 1.21919 1.01170 0.96671 0.98987 1.21612 1.01248 0.98755 0.95854 1.21073 0.92781 1.01308 1.39443 0.91666 1.24775 0.98086 0.95267 0.94725 1.69812 1.19288 1.23670 1.39338 0.86806 0.80892 0.82269 0.78862 1.20475 1.21423 1.19416 0.88907 0.87530 0.88168 0.87456 0.89275 0.93645 0.89789 0.89853 0.90531 0.88437 0.88529 0.89999 0.90396 0.89682 0.92915 0.88829 0.96919 0.95019 0.94763 0.96361 0.89352 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.99 10.83 29.02 0.31 -1.68 16 2 C -0.19 -3.01 7.66 -36.03 -0.28 -3.29 16 3 C 0.15 2.42 5.67 -5.19 -0.03 2.39 16 4 N -0.46 -9.12 2.79 -115.36 -0.32 -9.44 16 5 C 0.31 6.01 6.82 -318.87 -2.18 3.83 16 6 N -0.45 -6.85 4.57 -174.27 -0.80 -7.64 16 7 C 0.06 0.77 5.44 -3.71 -0.02 0.75 16 8 C -0.08 -0.82 6.21 -27.37 -0.17 -0.98 16 9 C -0.12 -1.19 5.41 -100.35 -0.54 -1.73 16 10 C -0.20 -1.77 14.01 29.01 0.41 -1.36 16 11 C -0.08 -0.85 6.21 -27.38 -0.17 -1.02 16 12 C 0.08 1.07 4.92 -3.71 -0.02 1.06 16 13 N -0.33 -7.31 11.49 30.31 0.35 -6.96 16 14 N -0.32 -7.68 11.50 32.99 0.38 -7.30 16 15 C 0.25 5.77 6.27 -154.02 -0.97 4.80 16 16 C 0.14 3.41 0.53 -156.81 -0.08 3.32 16 17 C -0.13 -2.87 7.94 37.16 0.29 -2.57 16 18 C -0.12 -2.84 7.75 37.16 0.29 -2.56 16 19 C -0.51 -12.25 6.02 -34.44 -0.21 -12.46 16 20 H 0.07 1.59 5.04 -52.49 -0.26 1.32 16 21 C 0.07 1.80 5.15 -17.82 -0.09 1.70 16 22 N -0.88 -22.33 9.45 55.43 0.52 -21.81 16 23 Si 0.88 19.27 28.77 -169.99 -4.89 14.38 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 26 H -0.27 -5.44 6.62 56.52 0.37 -5.06 16 27 H 0.09 1.41 8.06 -52.49 -0.42 0.98 16 28 H 0.11 1.78 7.85 -52.49 -0.41 1.37 16 29 H 0.10 1.53 6.19 -52.49 -0.32 1.21 16 30 H 0.11 1.85 4.88 -51.93 -0.25 1.60 16 31 H 0.09 1.27 8.12 -51.93 -0.42 0.85 16 32 H 0.05 0.65 8.10 -51.93 -0.42 0.23 16 33 H 0.08 1.14 5.13 -51.93 -0.27 0.87 16 34 H 0.08 0.82 8.14 -51.92 -0.42 0.39 16 35 H 0.08 0.67 7.93 -51.93 -0.41 0.26 16 36 H 0.10 0.77 7.95 -52.49 -0.42 0.35 16 37 H 0.10 0.77 7.95 -52.49 -0.42 0.35 16 38 H 0.08 0.82 8.14 -51.92 -0.42 0.39 16 39 H 0.08 0.68 7.93 -51.92 -0.41 0.27 16 40 H 0.08 1.22 8.04 -51.93 -0.42 0.80 16 41 H 0.05 0.77 8.10 -51.93 -0.42 0.35 16 42 H 0.09 2.23 6.30 -51.93 -0.33 1.90 16 43 H 0.01 0.26 8.13 -51.93 -0.42 -0.17 16 44 H 0.03 0.65 5.41 -51.93 -0.28 0.37 16 45 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.09 2.25 6.08 -51.93 -0.32 1.93 16 48 H 0.26 6.47 8.31 -40.82 -0.34 6.13 16 LS Contribution 364.29 15.07 5.49 5.49 Total: -1.00 -27.70 364.29 -10.20 -37.90 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -7.48 Total: 5.19 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -3.45 Total: -9.81 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: 0.13 Total: -53.15 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -4.89 Total: 14.38 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -27.70 -10.20 -37.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520448497.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.076 kcal (2) G-P(sol) polarization free energy of solvation -27.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds