Wall clock time and date at job start Tue Mar 31 2020 11:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50696 * 120.00241 * 2 1 4 4 N 1.46509 * 109.46938 * 126.35892 * 3 2 1 5 5 C 1.36455 * 127.13591 * 94.54816 * 4 3 2 6 6 N 1.38582 * 126.47310 * 0.02562 * 5 4 3 7 7 C 1.46827 * 111.00024 * 284.77832 * 6 5 4 8 8 C 1.53294 * 109.40079 * 170.24993 * 7 6 5 9 9 C 1.51431 * 108.24351 * 53.78758 * 8 7 6 10 10 C 1.31008 * 121.10849 * 130.95276 * 9 8 7 11 11 C 1.51429 * 117.77956 * 310.97826 * 9 8 7 12 12 C 1.46830 * 111.00007 * 160.09183 * 6 5 4 13 13 N 1.31216 * 107.05280 * 179.97438 * 5 4 3 14 14 N 1.28534 * 109.86031 * 359.73091 * 13 5 4 15 15 C 1.30299 * 110.05012 * 0.45072 * 14 13 5 16 16 C 1.50701 * 126.34421 * 179.82162 * 15 14 13 17 17 C 1.52996 * 109.47059 * 118.82151 * 16 15 14 18 18 C 1.53002 * 109.47148 * 358.82201 * 16 15 14 19 19 C 1.50702 * 109.47216 * 238.82348 * 16 15 14 20 20 H 1.08001 * 119.99656 * 359.97438 * 19 16 15 21 21 C 1.37869 * 120.00042 * 180.27897 * 19 16 15 22 22 N 1.31518 * 120.00256 * 359.71725 * 21 19 16 23 23 Si 1.86798 * 120.00180 * 179.72437 * 21 19 16 24 24 H 1.48503 * 109.47406 * 59.99381 * 23 21 19 25 25 H 1.48496 * 109.47488 * 179.97438 * 23 21 19 26 26 H 1.48508 * 109.47001 * 299.99909 * 23 21 19 27 27 H 1.08001 * 120.00190 * 179.97438 * 1 2 3 28 28 H 1.07996 * 119.99630 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.99700 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.47280 * 6.36185 * 3 2 1 31 31 H 1.08999 * 109.47379 * 246.35558 * 3 2 1 32 32 H 1.09003 * 109.48266 * 290.23028 * 7 6 5 33 33 H 1.08997 * 109.48521 * 50.26785 * 7 6 5 34 34 H 1.09007 * 109.70786 * 294.10137 * 8 7 6 35 35 H 1.08998 * 109.71462 * 173.48011 * 8 7 6 36 36 H 1.07996 * 119.99856 * 180.02562 * 10 9 8 37 37 H 1.08001 * 119.99903 * 0.02711 * 10 9 8 38 38 H 1.09007 * 109.70962 * 289.33455 * 11 9 8 39 39 H 1.09009 * 109.71012 * 168.71558 * 11 9 8 40 40 H 1.09006 * 109.48073 * 309.72858 * 12 6 5 41 41 H 1.09000 * 109.48227 * 69.75671 * 12 6 5 42 42 H 1.08998 * 109.47195 * 187.66315 * 17 16 15 43 43 H 1.09000 * 109.47013 * 307.66275 * 17 16 15 44 44 H 1.09002 * 109.47377 * 67.66407 * 17 16 15 45 45 H 1.09004 * 109.47119 * 299.99892 * 18 16 15 46 46 H 1.09000 * 109.47101 * 59.99545 * 18 16 15 47 47 H 1.08999 * 109.47244 * 180.02562 * 18 16 15 48 48 H 0.96998 * 119.99896 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0168 1.3184 1.1124 5 6 4.3351 0.9683 1.0718 6 7 5.0367 0.5280 -0.0392 7 6 4.6903 -0.8615 -0.3636 8 6 5.2914 -1.2317 -1.7243 9 6 6.7749 -0.9302 -1.6851 10 6 7.6562 -1.8154 -2.0802 11 6 7.2057 0.4283 -1.1733 12 6 6.4830 0.6930 0.1524 13 7 4.8131 1.1282 2.2833 14 7 3.8872 1.5565 3.0651 15 6 2.7703 1.6850 2.4064 16 6 1.4527 2.1564 2.9657 17 6 1.0197 3.4336 2.2432 18 6 1.6066 2.4433 4.4607 19 6 0.4101 1.0871 2.7642 20 1 0.6750 0.1592 2.2793 21 6 -0.8834 1.2959 3.1933 22 7 -1.2061 2.4261 3.7835 23 14 -2.1776 -0.0264 2.9367 24 1 -1.7629 -1.2678 3.6382 25 1 -3.4771 0.4400 3.4835 26 1 -2.3216 -0.3029 1.4847 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5399 0.9353 -0.0004 29 1 1.8499 -0.9353 -0.0004 30 1 1.3607 2.1304 0.1139 31 1 2.6021 1.4136 -0.9414 32 1 5.0908 -1.5246 0.4033 33 1 3.6061 -0.9659 -0.4046 34 1 4.8170 -0.6417 -2.5085 35 1 5.1370 -2.2932 -1.9179 36 1 8.7099 -1.5815 -2.0442 37 1 7.3289 -2.7789 -2.4421 38 1 6.9368 1.1965 -1.8984 39 1 8.2838 0.4355 -1.0121 40 1 6.6921 1.7102 0.4837 41 1 6.8330 -0.0136 0.9050 42 1 0.1408 3.8495 2.7358 43 1 1.8311 4.1608 2.2730 44 1 0.7786 3.2004 1.2060 45 1 1.9152 1.5334 4.9754 46 1 2.3608 3.2167 4.6064 47 1 0.6536 2.7838 4.8653 48 1 -2.1162 2.5731 4.0851 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520448497.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:17 Heat of formation + Delta-G solvation = 116.489430 kcal Electronic energy + Delta-G solvation = -28224.998914 eV Core-core repulsion = 24703.141967 eV Total energy + Delta-G solvation = -3521.856946 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.86369 -40.05119 -37.81742 -36.71377 -35.51795 -33.67301 -33.10605 -32.24106 -30.35903 -28.44324 -27.65001 -27.55547 -26.98628 -24.75296 -23.62598 -23.37675 -21.98769 -20.76376 -20.72670 -19.20156 -18.47763 -17.99716 -17.13508 -16.98878 -16.71987 -16.03582 -15.76025 -15.63503 -15.39837 -15.09106 -14.89122 -14.48799 -14.36763 -14.06531 -13.87273 -13.49425 -13.30022 -13.18547 -12.89351 -12.83802 -12.74744 -12.47774 -12.36646 -12.36310 -12.27148 -12.22863 -11.94452 -11.83275 -11.58741 -11.39042 -11.33160 -11.08195 -10.85649 -10.45047 -10.34548 -10.04149 -9.90219 -9.25074 -7.98166 -6.11409 0.91677 1.16882 1.36805 1.46814 1.52071 1.54977 1.76832 1.99152 2.50457 2.76946 3.28121 3.64152 3.72066 3.74635 3.92145 3.99386 4.08217 4.16469 4.21730 4.22169 4.33136 4.38788 4.47717 4.58712 4.65161 4.71679 4.76389 4.81864 4.90329 4.96765 5.00110 5.02169 5.03076 5.09654 5.13587 5.18074 5.27127 5.38076 5.56299 5.58586 5.68896 5.70402 5.75898 5.81807 5.86449 5.98970 5.99238 6.13440 6.35245 6.38533 6.87485 7.54485 7.94762 9.03270 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.019661 B = 0.004401 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.784117 B = 6360.379356 C = 7244.514347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.189 4.189 3 C 0.144 3.856 4 N -0.460 5.460 5 C 0.332 3.668 6 N -0.445 5.445 7 C 0.058 3.942 8 C -0.070 4.070 9 C -0.141 4.141 10 C -0.183 4.183 11 C -0.072 4.072 12 C 0.079 3.921 13 N -0.362 5.362 14 N -0.349 5.349 15 C 0.233 3.767 16 C 0.142 3.858 17 C -0.117 4.117 18 C -0.106 4.106 19 C -0.507 4.507 20 H 0.064 0.936 21 C 0.041 3.959 22 N -0.904 5.904 23 Si 0.928 3.072 24 H -0.291 1.291 25 H -0.295 1.295 26 H -0.240 1.240 27 H 0.105 0.895 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.031 0.969 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.071 0.929 41 H 0.038 0.962 42 H 0.076 0.924 43 H 0.013 0.987 44 H 0.045 0.955 45 H 0.016 0.984 46 H 0.017 0.983 47 H 0.075 0.925 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.200 -5.950 -15.875 19.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.208 4.208 3 C 0.023 3.977 4 N -0.151 5.151 5 C -0.026 4.026 6 N -0.170 5.170 7 C -0.069 4.069 8 C -0.108 4.108 9 C -0.141 4.141 10 C -0.220 4.220 11 C -0.110 4.110 12 C -0.048 4.048 13 N -0.205 5.205 14 N -0.187 5.187 15 C -0.036 4.036 16 C 0.139 3.861 17 C -0.175 4.175 18 C -0.164 4.164 19 C -0.545 4.545 20 H 0.082 0.918 21 C -0.159 4.159 22 N -0.542 5.542 23 Si 0.755 3.245 24 H -0.217 1.217 25 H -0.221 1.221 26 H -0.164 1.164 27 H 0.123 0.877 28 H 0.118 0.882 29 H 0.127 0.873 30 H 0.118 0.882 31 H 0.133 0.867 32 H 0.049 0.951 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.105 0.895 39 H 0.114 0.886 40 H 0.089 0.911 41 H 0.057 0.943 42 H 0.095 0.905 43 H 0.032 0.968 44 H 0.064 0.936 45 H 0.035 0.965 46 H 0.036 0.964 47 H 0.094 0.906 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.924 -5.550 -15.083 18.889 hybrid contribution -1.452 -0.963 0.302 1.768 sum 8.472 -6.513 -14.781 18.239 Atomic orbital electron populations 1.23913 0.95534 1.02396 0.94576 1.22724 0.96207 0.96838 1.05014 1.21141 0.90825 0.98453 0.87284 1.46259 1.08842 1.49424 1.10618 1.22681 0.84012 1.03850 0.92039 1.58601 1.08054 1.22315 1.28072 1.22433 1.01460 0.84763 0.98242 1.20867 0.92469 1.02584 0.94858 1.22013 0.95579 0.96337 1.00217 1.23801 0.99090 0.98639 1.00437 1.20901 0.99995 0.95463 0.94629 1.22022 0.82914 1.01713 0.98176 1.74351 1.25455 1.21985 0.98746 1.73890 0.97789 1.20791 1.26206 1.25843 0.98484 0.98550 0.80710 1.16860 0.82836 0.94385 0.92045 1.21756 1.00295 0.96007 0.99453 1.21479 1.00280 0.97702 0.96934 1.21136 0.92933 1.01235 1.39232 0.91825 1.25291 0.99468 0.96617 0.94568 1.69920 1.19384 1.24933 1.40003 0.86097 0.78541 0.79622 0.80260 1.21745 1.22137 1.16384 0.87691 0.88233 0.87338 0.88181 0.86674 0.95096 0.90037 0.89088 0.88634 0.87338 0.87325 0.89480 0.88612 0.91068 0.94347 0.90479 0.96829 0.93617 0.96516 0.96401 0.90591 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 10.83 67.78 0.73 -3.04 16 2 C -0.19 -5.64 7.66 25.65 0.20 -5.44 16 3 C 0.14 4.52 5.67 85.63 0.49 5.01 16 4 N -0.46 -17.87 2.79 -518.90 -1.45 -19.32 16 5 C 0.33 12.64 6.82 260.11 1.77 14.41 16 6 N -0.45 -12.89 4.57 -705.25 -3.22 -16.12 16 7 C 0.06 1.42 5.44 86.42 0.47 1.89 16 8 C -0.07 -1.21 6.21 30.18 0.19 -1.02 16 9 C -0.14 -2.41 5.41 -16.03 -0.09 -2.49 16 10 C -0.18 -2.54 14.01 67.77 0.95 -1.59 16 11 C -0.07 -1.31 6.21 30.18 0.19 -1.12 16 12 C 0.08 2.06 4.92 86.41 0.43 2.48 16 13 N -0.36 -16.36 11.49 -58.00 -0.67 -17.02 16 14 N -0.35 -17.37 11.50 -49.54 -0.57 -17.94 16 15 C 0.23 10.83 6.27 137.64 0.86 11.69 16 16 C 0.14 6.75 0.53 -53.67 -0.03 6.72 16 17 C -0.12 -5.21 7.94 71.98 0.57 -4.64 16 18 C -0.11 -5.32 7.75 71.98 0.56 -4.76 16 19 C -0.51 -24.37 6.02 25.60 0.15 -24.22 16 20 H 0.06 3.05 5.04 -2.91 -0.01 3.04 16 21 C 0.04 1.97 5.15 84.65 0.44 2.41 16 22 N -0.90 -46.03 9.45 21.44 0.20 -45.83 16 23 Si 0.93 38.70 28.77 68.60 1.97 40.67 16 24 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 25 H -0.30 -12.60 7.11 99.48 0.71 -11.89 16 26 H -0.24 -8.83 6.62 99.48 0.66 -8.17 16 27 H 0.10 2.87 8.06 -2.91 -0.02 2.85 16 28 H 0.10 3.13 7.85 -2.91 -0.02 3.11 16 29 H 0.11 3.07 6.19 -2.91 -0.02 3.05 16 30 H 0.10 3.32 4.88 -2.39 -0.01 3.30 16 31 H 0.12 2.99 8.12 -2.39 -0.02 2.97 16 32 H 0.03 0.85 8.10 -2.39 -0.02 0.83 16 33 H 0.08 2.04 5.13 -2.39 -0.01 2.03 16 34 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.10 1.31 7.93 -2.39 -0.02 1.29 16 36 H 0.11 1.28 7.95 -2.91 -0.02 1.25 16 37 H 0.11 1.27 7.95 -2.91 -0.02 1.24 16 38 H 0.09 1.49 8.14 -2.38 -0.02 1.48 16 39 H 0.10 1.40 7.93 -2.38 -0.02 1.38 16 40 H 0.07 2.04 8.04 -2.38 -0.02 2.02 16 41 H 0.04 1.11 8.10 -2.39 -0.02 1.09 16 42 H 0.08 3.70 6.30 -2.39 -0.02 3.69 16 43 H 0.01 0.56 8.13 -2.39 -0.02 0.54 16 44 H 0.05 1.86 5.41 -2.39 -0.01 1.85 16 45 H 0.02 0.83 8.14 -2.38 -0.02 0.82 16 46 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.08 3.98 6.08 -2.39 -0.01 3.97 16 48 H 0.26 12.93 8.31 -92.71 -0.77 12.16 16 Total: -1.00 -60.16 364.29 5.05 -55.11 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.90 Total: 24.16 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 7.88 Total: -3.71 kcal Atomic # 7 Polarization: -110.53 SS G_CDS: -5.70 Total: -116.23 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 1.97 Total: 40.67 kcal Total: -60.16 5.05 -55.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520448497.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.604 kcal (2) G-P(sol) polarization free energy of solvation -60.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds