Wall clock time and date at job start Tue Mar 31 2020 12:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46894 * 109.47182 * 242.81663 * 3 2 1 5 5 C 1.46896 * 111.00395 * 298.91958 * 4 3 2 6 6 C 1.53001 * 109.46798 * 287.83394 * 5 4 3 7 7 C 1.38582 * 111.00284 * 62.87498 * 4 3 2 8 8 N 1.31217 * 126.46970 * 256.02597 * 7 4 3 9 9 N 1.28531 * 109.85713 * 180.02562 * 8 7 4 10 10 C 1.30289 * 110.05630 * 359.71527 * 9 8 7 11 11 C 1.50706 * 126.35274 * 180.31097 * 10 9 8 12 12 H 1.09000 * 109.47143 * 180.15543 * 11 10 9 13 13 C 1.52999 * 109.46861 * 60.15369 * 11 10 9 14 14 C 1.53002 * 109.46838 * 300.15541 * 11 10 9 15 15 C 1.50700 * 109.47089 * 184.99369 * 14 11 10 16 16 H 1.08001 * 119.99807 * 0.02562 * 15 14 11 17 17 C 1.37875 * 120.00115 * 179.97438 * 15 14 11 18 18 N 1.31512 * 120.00214 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99957 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47101 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46778 * 120.00251 * 19 17 15 22 22 H 1.48492 * 109.47172 * 240.00210 * 19 17 15 23 23 N 1.36454 * 126.47549 * 76.05424 * 7 4 3 24 24 C 1.46505 * 127.13755 * 359.97438 * 23 7 4 25 25 C 1.52995 * 109.47294 * 88.28137 * 24 23 7 26 26 C 1.53002 * 117.50126 * 243.62602 * 25 24 23 27 27 C 1.53001 * 60.00011 * 252.51174 * 26 25 24 28 28 H 4.40886 * 5.52278 * 180.02562 * 4 1 2 29 29 H 1.08997 * 109.47278 * 122.81322 * 3 2 1 30 30 H 1.09005 * 109.47143 * 2.81752 * 3 2 1 31 31 H 1.09001 * 109.47131 * 47.82981 * 5 4 3 32 32 H 1.08995 * 109.47661 * 167.83157 * 5 4 3 33 33 H 1.09001 * 109.47391 * 185.62279 * 6 5 4 34 34 H 1.09004 * 109.47219 * 305.62145 * 6 5 4 35 35 H 1.09000 * 109.47143 * 65.62419 * 6 5 4 36 36 H 1.09000 * 109.46940 * 300.00323 * 13 11 10 37 37 H 1.08999 * 109.46689 * 60.00318 * 13 11 10 38 38 H 1.08999 * 109.46960 * 180.02562 * 13 11 10 39 39 H 1.09002 * 109.47461 * 304.99998 * 14 11 10 40 40 H 1.09004 * 109.46862 * 65.00089 * 14 11 10 41 41 H 0.96996 * 120.00525 * 179.97438 * 18 17 15 42 42 H 1.08993 * 109.46867 * 208.28879 * 24 23 7 43 43 H 1.09002 * 109.46545 * 328.28531 * 24 23 7 44 44 H 1.09008 * 115.55205 * 29.33275 * 25 24 23 45 45 H 1.09000 * 117.49520 * 359.97438 * 26 25 24 46 46 H 1.08993 * 117.49946 * 145.02612 * 26 25 24 47 47 H 1.09000 * 117.50110 * 252.51367 * 27 26 25 48 48 H 1.08996 * 117.50552 * 107.48651 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1354 0.6336 1.2320 5 6 2.6850 2.0289 1.3218 6 6 3.4521 2.8787 0.3067 7 6 2.7452 -0.0871 2.3495 8 7 1.7845 0.2294 3.1854 9 7 1.6961 -0.6623 4.1068 10 6 2.5836 -1.5960 3.9116 11 6 2.7970 -2.8184 4.7668 12 1 3.6124 -3.4126 4.3542 13 6 1.5164 -3.6553 4.7889 14 6 3.1499 -2.3884 6.1921 15 6 3.4830 -3.6054 7.0161 16 1 3.4471 -4.5873 6.5679 17 6 3.8346 -3.4652 8.3419 18 7 3.8789 -2.2695 8.8876 19 14 4.2483 -4.9737 9.3630 20 1 4.1251 -6.1905 8.5208 21 1 5.6396 -4.8619 9.8701 22 1 3.3095 -5.0678 10.5097 23 7 3.2876 -1.2596 2.7887 24 6 4.3911 -2.0066 2.1798 25 6 5.7211 -1.4993 2.7407 26 6 6.6950 -0.8397 1.7623 27 6 6.9936 -2.2346 2.3153 28 1 -1.0501 -0.0002 0.0000 29 1 3.0091 0.5577 -0.8637 30 1 3.0098 -1.0256 -0.0505 31 1 1.6178 2.0808 1.1064 32 1 2.8716 2.4070 2.3269 33 1 3.1914 3.9285 0.4409 34 1 4.5235 2.7480 0.4592 35 1 3.1879 2.5649 -0.7032 36 1 0.7011 -3.0610 5.2014 37 1 1.2651 -3.9616 3.7734 38 1 1.6706 -4.5392 5.4077 39 1 4.0103 -1.7196 6.1674 40 1 2.2998 -1.8705 6.6363 41 1 4.1259 -2.1708 9.8204 42 1 4.2814 -3.0668 2.4074 43 1 4.3742 -1.8632 1.0994 44 1 5.6832 -1.1051 3.7563 45 1 6.3883 -0.7675 0.7188 46 1 7.2980 -0.0113 2.1340 47 1 7.7930 -2.3239 3.0509 48 1 6.8832 -3.0798 1.6359 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520527221.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:48 Heat of formation + Delta-G solvation = 158.791503 kcal Electronic energy + Delta-G solvation = -27300.162578 eV Core-core repulsion = 23780.139987 eV Total energy + Delta-G solvation = -3520.022591 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.60773 -38.38651 -37.70719 -35.21420 -33.98226 -33.02438 -32.22616 -30.87742 -28.84540 -27.60456 -26.95936 -26.27540 -24.03590 -22.94247 -22.42254 -21.76103 -21.18182 -20.45137 -18.97783 -18.39755 -17.11449 -16.55635 -16.40470 -16.11825 -15.31483 -15.02434 -14.87236 -14.52257 -14.15676 -13.90128 -13.78576 -13.29342 -13.20173 -12.92026 -12.40938 -12.23878 -12.20713 -11.91001 -11.73232 -11.59306 -11.28675 -11.22223 -11.04360 -10.92033 -10.78108 -10.65839 -10.52673 -10.46261 -10.40761 -10.24188 -10.09717 -9.92578 -9.71234 -9.66072 -9.17532 -9.08117 -8.35551 -8.06656 -5.98816 -4.02242 2.08460 2.38558 2.69365 2.76612 3.31214 3.37443 3.39329 3.41980 3.64036 3.82018 4.22922 4.44608 4.55384 4.66460 4.74645 4.85204 4.94745 4.97730 5.05642 5.12883 5.22970 5.27311 5.36746 5.37838 5.45201 5.51355 5.57487 5.62012 5.67796 5.79641 5.82847 5.84662 6.04531 6.05366 6.08141 6.12746 6.15308 6.28041 6.36171 6.61124 6.72235 6.84317 6.94287 7.07144 7.46228 7.47850 7.65299 7.81160 8.00889 8.36905 9.03538 9.27540 9.61241 11.12280 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.014891 B = 0.003865 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.940952 B = 7243.166906 C = 8046.265003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.230 4.230 3 C 0.165 3.835 4 N -0.440 5.440 5 C 0.064 3.936 6 C -0.147 4.147 7 C 0.329 3.671 8 N -0.313 5.313 9 N -0.286 5.286 10 C 0.218 3.782 11 C -0.002 4.002 12 H 0.072 0.928 13 C -0.126 4.126 14 C 0.040 3.960 15 C -0.519 4.519 16 H 0.059 0.941 17 C 0.060 3.940 18 N -0.890 5.890 19 Si 0.890 3.110 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.284 1.284 23 N -0.473 5.473 24 C 0.146 3.854 25 C -0.168 4.168 26 C -0.167 4.167 27 C -0.170 4.170 28 H 0.216 0.784 29 H 0.111 0.889 30 H 0.093 0.907 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.030 0.970 38 H 0.074 0.926 39 H 0.013 0.987 40 H 0.031 0.969 41 H 0.260 0.740 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.114 0.886 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.099 0.901 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.318 3.857 -21.658 22.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.232 4.232 3 C 0.038 3.962 4 N -0.163 5.163 5 C -0.063 4.063 6 C -0.205 4.205 7 C -0.027 4.027 8 N -0.156 5.156 9 N -0.124 5.124 10 C -0.050 4.050 11 C -0.023 4.023 12 H 0.090 0.910 13 C -0.184 4.184 14 C 0.002 3.998 15 C -0.557 4.557 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.529 5.529 19 Si 0.718 3.282 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.210 1.210 23 N -0.167 5.167 24 C 0.023 3.977 25 C -0.187 4.187 26 C -0.204 4.204 27 C -0.207 4.207 28 H 0.233 0.767 29 H 0.129 0.871 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.049 0.951 38 H 0.093 0.907 39 H 0.032 0.968 40 H 0.049 0.951 41 H 0.070 0.930 42 H 0.116 0.884 43 H 0.108 0.892 44 H 0.132 0.868 45 H 0.113 0.887 46 H 0.112 0.888 47 H 0.117 0.883 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.768 4.754 -20.889 21.496 hybrid contribution 0.447 -1.386 0.117 1.461 sum 2.215 3.368 -20.772 21.159 Atomic orbital electron populations 1.24980 0.95999 0.99589 0.98325 1.23812 0.95460 1.01592 1.02326 1.19463 0.83292 1.00847 0.92587 1.59119 1.56380 1.02894 0.97904 1.22067 0.98667 0.83984 1.01551 1.21815 1.01238 0.99116 0.98293 1.22192 0.94479 0.88588 0.97420 1.74560 1.14861 1.22610 1.03604 1.74027 1.20319 1.00100 1.17930 1.25601 0.91734 1.00209 0.87410 1.19986 0.98420 0.87459 0.96402 0.90980 1.21677 0.96745 1.00435 0.99529 1.19087 0.97342 0.96835 0.86516 1.21176 1.46362 0.92927 0.95239 0.92321 1.24992 0.95603 0.95680 0.97936 1.69990 1.48211 1.21656 1.13048 0.86570 0.77952 0.83253 0.80422 1.19700 1.21120 1.20994 1.46239 1.28239 1.19588 1.22595 1.21347 0.83048 0.96032 0.97250 1.22551 0.89776 1.05565 1.00823 1.22986 1.02656 0.96088 0.98656 1.22959 0.98518 0.95589 1.03664 0.76727 0.87081 0.88913 0.92489 0.89601 0.91598 0.91553 0.92793 0.92094 0.95107 0.90679 0.96825 0.95053 0.93011 0.88367 0.89248 0.86796 0.88660 0.88808 0.88277 0.88640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 19.25 29.55 0.57 -1.47 16 2 C -0.23 -2.86 11.13 -37.12 -0.41 -3.28 16 3 C 0.16 1.72 5.63 -6.61 -0.04 1.68 16 4 N -0.44 -5.61 4.70 -177.85 -0.84 -6.45 16 5 C 0.06 0.77 5.03 -3.83 -0.02 0.76 16 6 C -0.15 -1.24 9.85 37.16 0.37 -0.87 16 7 C 0.33 5.53 6.01 -318.87 -1.92 3.61 16 8 N -0.31 -6.36 11.39 30.31 0.35 -6.01 16 9 N -0.29 -6.40 12.18 32.99 0.40 -6.00 16 10 C 0.22 4.39 6.58 -154.02 -1.01 3.38 16 11 C 0.00 -0.03 2.70 -91.77 -0.25 -0.28 16 12 H 0.07 1.37 6.89 -51.93 -0.36 1.02 16 13 C -0.13 -2.41 8.99 37.16 0.33 -2.08 16 14 C 0.04 1.04 4.43 -27.88 -0.12 0.92 16 15 C -0.52 -14.11 8.41 -34.44 -0.29 -14.40 16 16 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -26.78 13.29 55.43 0.74 -26.05 16 19 Si 0.89 21.27 29.54 -169.99 -5.02 16.24 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 N -0.47 -7.86 2.81 -114.08 -0.32 -8.18 16 24 C 0.15 1.84 6.20 -4.04 -0.03 1.81 16 25 C -0.17 -2.13 6.01 -90.62 -0.54 -2.68 16 26 C -0.17 -1.67 10.18 -26.73 -0.27 -1.94 16 27 C -0.17 -1.72 10.25 -26.73 -0.27 -1.99 16 28 H 0.22 1.94 7.80 -54.08 -0.42 1.52 16 29 H 0.11 0.84 6.79 -51.93 -0.35 0.49 16 30 H 0.09 0.89 6.55 -51.93 -0.34 0.55 16 31 H 0.06 0.74 6.76 -51.93 -0.35 0.39 16 32 H 0.09 1.21 7.84 -51.93 -0.41 0.80 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.05 0.39 6.99 -51.93 -0.36 0.03 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 1.45 6.95 -51.93 -0.36 1.09 16 39 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.10 1.17 7.14 -51.93 -0.37 0.80 16 43 H 0.09 0.89 6.22 -51.93 -0.32 0.57 16 44 H 0.11 1.85 8.14 -51.92 -0.42 1.43 16 45 H 0.09 0.81 8.03 -51.93 -0.42 0.39 16 46 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 396.05 15.07 5.97 5.97 Total: -1.00 -33.54 396.05 -10.53 -44.07 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -7.80 Total: 1.66 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -4.00 Total: -15.26 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: 0.33 Total: -52.69 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.54 -10.53 -44.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520527221.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.860 kcal (2) G-P(sol) polarization free energy of solvation -33.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds