Wall clock time and date at job start Tue Mar 31 2020 12:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46894 * 109.47182 * 242.81663 * 3 2 1 5 5 C 1.46896 * 111.00395 * 298.91958 * 4 3 2 6 6 C 1.53001 * 109.46798 * 287.83394 * 5 4 3 7 7 C 1.38582 * 111.00284 * 62.87498 * 4 3 2 8 8 N 1.31217 * 126.46970 * 256.02597 * 7 4 3 9 9 N 1.28531 * 109.85713 * 180.02562 * 8 7 4 10 10 C 1.30289 * 110.05630 * 359.71527 * 9 8 7 11 11 C 1.50706 * 126.35274 * 180.31097 * 10 9 8 12 12 H 1.09000 * 109.47143 * 180.15543 * 11 10 9 13 13 C 1.52999 * 109.46861 * 60.15369 * 11 10 9 14 14 C 1.53002 * 109.46838 * 300.15541 * 11 10 9 15 15 C 1.50700 * 109.47089 * 184.99369 * 14 11 10 16 16 H 1.08001 * 119.99807 * 0.02562 * 15 14 11 17 17 C 1.37875 * 120.00115 * 179.97438 * 15 14 11 18 18 N 1.31512 * 120.00214 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99957 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47101 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46778 * 120.00251 * 19 17 15 22 22 H 1.48492 * 109.47172 * 240.00210 * 19 17 15 23 23 N 1.36454 * 126.47549 * 76.05424 * 7 4 3 24 24 C 1.46505 * 127.13755 * 359.97438 * 23 7 4 25 25 C 1.52995 * 109.47294 * 88.28137 * 24 23 7 26 26 C 1.53002 * 117.50126 * 243.62602 * 25 24 23 27 27 C 1.53001 * 60.00011 * 252.51174 * 26 25 24 28 28 H 4.40886 * 5.52278 * 180.02562 * 4 1 2 29 29 H 1.08997 * 109.47278 * 122.81322 * 3 2 1 30 30 H 1.09005 * 109.47143 * 2.81752 * 3 2 1 31 31 H 1.09001 * 109.47131 * 47.82981 * 5 4 3 32 32 H 1.08995 * 109.47661 * 167.83157 * 5 4 3 33 33 H 1.09001 * 109.47391 * 185.62279 * 6 5 4 34 34 H 1.09004 * 109.47219 * 305.62145 * 6 5 4 35 35 H 1.09000 * 109.47143 * 65.62419 * 6 5 4 36 36 H 1.09000 * 109.46940 * 300.00323 * 13 11 10 37 37 H 1.08999 * 109.46689 * 60.00318 * 13 11 10 38 38 H 1.08999 * 109.46960 * 180.02562 * 13 11 10 39 39 H 1.09002 * 109.47461 * 304.99998 * 14 11 10 40 40 H 1.09004 * 109.46862 * 65.00089 * 14 11 10 41 41 H 0.96996 * 120.00525 * 179.97438 * 18 17 15 42 42 H 1.08993 * 109.46867 * 208.28879 * 24 23 7 43 43 H 1.09002 * 109.46545 * 328.28531 * 24 23 7 44 44 H 1.09008 * 115.55205 * 29.33275 * 25 24 23 45 45 H 1.09000 * 117.49520 * 359.97438 * 26 25 24 46 46 H 1.08993 * 117.49946 * 145.02612 * 26 25 24 47 47 H 1.09000 * 117.50110 * 252.51367 * 27 26 25 48 48 H 1.08996 * 117.50552 * 107.48651 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1354 0.6336 1.2320 5 6 2.6850 2.0289 1.3218 6 6 3.4521 2.8787 0.3067 7 6 2.7452 -0.0871 2.3495 8 7 1.7845 0.2294 3.1854 9 7 1.6961 -0.6623 4.1068 10 6 2.5836 -1.5960 3.9116 11 6 2.7970 -2.8184 4.7668 12 1 3.6124 -3.4126 4.3542 13 6 1.5164 -3.6553 4.7889 14 6 3.1499 -2.3884 6.1921 15 6 3.4830 -3.6054 7.0161 16 1 3.4471 -4.5873 6.5679 17 6 3.8346 -3.4652 8.3419 18 7 3.8789 -2.2695 8.8876 19 14 4.2483 -4.9737 9.3630 20 1 4.1251 -6.1905 8.5208 21 1 5.6396 -4.8619 9.8701 22 1 3.3095 -5.0678 10.5097 23 7 3.2876 -1.2596 2.7887 24 6 4.3911 -2.0066 2.1798 25 6 5.7211 -1.4993 2.7407 26 6 6.6950 -0.8397 1.7623 27 6 6.9936 -2.2346 2.3153 28 1 -1.0501 -0.0002 0.0000 29 1 3.0091 0.5577 -0.8637 30 1 3.0098 -1.0256 -0.0505 31 1 1.6178 2.0808 1.1064 32 1 2.8716 2.4070 2.3269 33 1 3.1914 3.9285 0.4409 34 1 4.5235 2.7480 0.4592 35 1 3.1879 2.5649 -0.7032 36 1 0.7011 -3.0610 5.2014 37 1 1.2651 -3.9616 3.7734 38 1 1.6706 -4.5392 5.4077 39 1 4.0103 -1.7196 6.1674 40 1 2.2998 -1.8705 6.6363 41 1 4.1259 -2.1708 9.8204 42 1 4.2814 -3.0668 2.4074 43 1 4.3742 -1.8632 1.0994 44 1 5.6832 -1.1051 3.7563 45 1 6.3883 -0.7675 0.7188 46 1 7.2980 -0.0113 2.1340 47 1 7.7930 -2.3239 3.0509 48 1 6.8832 -3.0798 1.6359 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520527221.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:47 Heat of formation + Delta-G solvation = 141.021950 kcal Electronic energy + Delta-G solvation = -27300.933123 eV Core-core repulsion = 23780.139987 eV Total energy + Delta-G solvation = -3520.793136 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.02371 -39.43834 -38.65725 -36.99189 -35.28114 -34.28412 -33.89178 -31.88983 -30.17433 -28.97922 -28.62969 -27.32338 -25.85549 -24.22884 -23.29758 -23.14868 -22.36226 -21.56666 -20.48085 -19.36853 -18.66832 -18.09346 -17.60297 -17.40918 -16.53249 -16.30990 -16.20169 -15.87167 -15.27431 -15.11683 -15.01091 -14.76213 -14.31911 -14.20577 -13.78969 -13.67689 -13.16021 -13.10404 -12.95472 -12.85646 -12.79628 -12.69530 -12.41097 -12.33097 -12.24924 -12.13457 -11.97517 -11.64355 -11.61297 -11.50860 -11.41328 -11.19425 -11.13803 -10.98619 -10.91346 -10.56752 -10.55126 -9.47686 -8.16658 -6.28630 0.75316 1.17308 1.42902 1.43949 1.56803 1.70076 1.78844 1.92535 2.43270 2.65367 2.88823 3.17507 3.39982 3.44402 3.61133 3.72307 3.83329 3.92630 3.99144 4.05381 4.13072 4.27400 4.31889 4.39648 4.42776 4.51305 4.56449 4.58220 4.60265 4.72291 4.82310 4.90185 4.96492 4.99633 5.03407 5.08042 5.12285 5.15001 5.21200 5.29321 5.32424 5.37014 5.45071 5.52365 5.63313 5.69266 5.82963 6.18155 6.22089 6.57997 6.87300 7.40744 7.79853 8.96199 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.014891 B = 0.003865 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.940952 B = 7243.166906 C = 8046.265003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.251 4.251 3 C 0.161 3.839 4 N -0.430 5.430 5 C 0.064 3.936 6 C -0.135 4.135 7 C 0.351 3.649 8 N -0.354 5.354 9 N -0.330 5.330 10 C 0.202 3.798 11 C 0.010 3.990 12 H 0.093 0.907 13 C -0.117 4.117 14 C 0.054 3.946 15 C -0.526 4.526 16 H 0.077 0.923 17 C -0.002 4.002 18 N -0.938 5.938 19 Si 0.967 3.033 20 H -0.251 1.251 21 H -0.282 1.282 22 H -0.284 1.284 23 N -0.467 5.467 24 C 0.142 3.858 25 C -0.197 4.197 26 C -0.149 4.149 27 C -0.155 4.155 28 H 0.233 0.767 29 H 0.150 0.850 30 H 0.108 0.892 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.038 0.962 37 H 0.062 0.938 38 H 0.075 0.925 39 H -0.025 1.025 40 H -0.013 1.013 41 H 0.261 0.739 42 H 0.107 0.893 43 H 0.126 0.874 44 H 0.064 0.936 45 H 0.123 0.877 46 H 0.088 0.912 47 H 0.092 0.908 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.760 2.020 -25.069 25.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.252 4.252 3 C 0.036 3.964 4 N -0.153 5.153 5 C -0.063 4.063 6 C -0.193 4.193 7 C -0.007 4.007 8 N -0.197 5.197 9 N -0.168 5.168 10 C -0.067 4.067 11 C -0.011 4.011 12 H 0.111 0.889 13 C -0.175 4.175 14 C 0.016 3.984 15 C -0.564 4.564 16 H 0.095 0.905 17 C -0.199 4.199 18 N -0.579 5.579 19 Si 0.791 3.209 20 H -0.175 1.175 21 H -0.207 1.207 22 H -0.210 1.210 23 N -0.160 5.160 24 C 0.020 3.980 25 C -0.216 4.216 26 C -0.186 4.186 27 C -0.192 4.192 28 H 0.250 0.750 29 H 0.168 0.832 30 H 0.126 0.874 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.094 0.906 39 H -0.007 1.007 40 H 0.005 0.995 41 H 0.070 0.930 42 H 0.125 0.875 43 H 0.144 0.856 44 H 0.083 0.917 45 H 0.141 0.859 46 H 0.107 0.893 47 H 0.110 0.890 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.221 2.903 -24.335 24.718 hybrid contribution 0.023 -0.688 1.114 1.310 sum 3.245 2.215 -23.220 23.550 Atomic orbital electron populations 1.25678 0.97073 0.99489 0.98016 1.24358 0.96449 1.01802 1.02632 1.19794 0.82355 1.02235 0.92036 1.59382 1.55733 1.02843 0.97368 1.22104 0.98753 0.84146 1.01276 1.21761 1.00791 0.98824 0.97922 1.22638 0.92690 0.87908 0.97420 1.74450 1.17395 1.23231 1.04650 1.73907 1.22197 1.01288 1.19424 1.25294 0.92566 0.99967 0.88879 1.19717 0.99865 0.88215 0.93269 0.88916 1.21583 0.95093 0.99543 1.01291 1.18801 0.93865 0.95650 0.90051 1.21599 1.45430 0.93780 0.95610 0.90476 1.26020 0.95423 0.98941 0.99558 1.70166 1.49667 1.24543 1.13480 0.85372 0.77487 0.79578 0.78461 1.17465 1.20748 1.20970 1.46355 1.28472 1.19623 1.21536 1.21744 0.81342 0.95970 0.98896 1.22356 0.91286 1.08648 0.99337 1.23096 1.00485 0.95881 0.99135 1.23071 0.96073 0.96669 1.03419 0.75004 0.83246 0.87394 0.93662 0.92627 0.90605 0.91067 0.90666 0.94259 0.91943 0.90648 1.00693 0.99479 0.93017 0.87470 0.85623 0.91721 0.85921 0.89299 0.88959 0.85941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.21 19.25 74.32 1.43 -2.78 16 2 C -0.25 -5.77 11.13 31.13 0.35 -5.42 16 3 C 0.16 2.82 5.63 84.50 0.48 3.30 16 4 N -0.43 -10.24 4.70 -716.58 -3.37 -13.61 16 5 C 0.06 1.50 5.03 86.30 0.43 1.94 16 6 C -0.14 -1.92 9.85 71.98 0.71 -1.22 16 7 C 0.35 11.78 6.01 260.11 1.56 13.34 16 8 N -0.35 -15.04 11.39 -58.00 -0.66 -15.70 16 9 N -0.33 -15.67 12.18 -49.53 -0.60 -16.27 16 10 C 0.20 8.45 6.58 137.64 0.91 9.36 16 11 C 0.01 0.44 2.70 -11.54 -0.03 0.40 16 12 H 0.09 3.50 6.89 -2.39 -0.02 3.48 16 13 C -0.12 -4.50 8.99 71.98 0.65 -3.85 16 14 C 0.05 2.99 4.43 29.85 0.13 3.13 16 15 C -0.53 -29.23 8.41 25.60 0.22 -29.02 16 16 H 0.08 3.92 7.06 -2.91 -0.02 3.90 16 17 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 18 N -0.94 -58.90 13.29 21.45 0.28 -58.62 16 19 Si 0.97 43.92 29.54 68.60 2.03 45.94 16 20 H -0.25 -10.48 7.11 99.48 0.71 -9.78 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 23 N -0.47 -15.45 2.81 -514.85 -1.45 -16.89 16 24 C 0.14 3.26 6.20 86.38 0.54 3.80 16 25 C -0.20 -4.83 6.01 -10.79 -0.06 -4.90 16 26 C -0.15 -2.58 10.18 30.60 0.31 -2.27 16 27 C -0.15 -2.75 10.25 30.60 0.31 -2.43 16 28 H 0.23 3.99 7.80 -4.41 -0.03 3.95 16 29 H 0.15 1.51 6.79 -2.39 -0.02 1.49 16 30 H 0.11 1.59 6.55 -2.38 -0.02 1.58 16 31 H 0.04 1.17 6.76 -2.39 -0.02 1.15 16 32 H 0.06 1.63 7.84 -2.39 -0.02 1.61 16 33 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.07 0.78 6.99 -2.39 -0.02 0.76 16 36 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.07 2.85 6.95 -2.39 -0.02 2.84 16 39 H -0.03 -1.56 8.14 -2.39 -0.02 -1.58 16 40 H -0.01 -0.84 8.14 -2.38 -0.02 -0.86 16 41 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 42 H 0.11 2.27 7.14 -2.39 -0.02 2.25 16 43 H 0.13 1.95 6.22 -2.39 -0.01 1.94 16 44 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 45 H 0.12 1.48 8.03 -2.39 -0.02 1.46 16 46 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -79.51 396.05 5.55 -73.96 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.93 Total: 17.48 kcal Atomic # 6 Polarization: -24.67 SS G_CDS: 8.39 Total: -16.29 kcal Atomic # 7 Polarization: -115.30 SS G_CDS: -5.79 Total: -121.09 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -79.51 5.55 -73.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520527221.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.979 kcal (2) G-P(sol) polarization free energy of solvation -79.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds