Wall clock time and date at job start Tue Mar 31 2020 12:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46899 * 109.47244 * 335.51887 * 3 2 1 5 5 C 1.46895 * 111.00356 * 60.73945 * 4 3 2 6 6 C 1.53005 * 109.47298 * 199.79216 * 5 4 3 7 7 C 1.38585 * 111.00086 * 184.69581 * 4 3 2 8 8 N 1.31214 * 126.47302 * 236.02102 * 7 4 3 9 9 N 1.28522 * 109.85809 * 179.97438 * 8 7 4 10 10 C 1.30291 * 110.05860 * 359.97438 * 9 8 7 11 11 C 1.50700 * 126.34989 * 180.02562 * 10 9 8 12 12 H 1.09005 * 109.47353 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47161 * 300.01702 * 11 10 9 14 14 C 1.53001 * 109.47566 * 60.02024 * 11 10 9 15 15 C 1.50697 * 109.47276 * 174.99898 * 14 11 10 16 16 H 1.08000 * 120.00159 * 0.02562 * 15 14 11 17 17 C 1.37880 * 119.99862 * 180.02562 * 15 14 11 18 18 N 1.31511 * 120.00073 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 119.99786 * 0.02562 * 17 15 14 20 20 H 1.48492 * 109.47104 * 90.00283 * 19 17 15 21 21 H 1.48506 * 109.46556 * 209.99872 * 19 17 15 22 22 H 1.48498 * 109.47396 * 329.99702 * 19 17 15 23 23 N 1.36453 * 126.47124 * 56.32750 * 7 4 3 24 24 C 1.46501 * 127.14044 * 0.02562 * 23 7 4 25 25 C 1.53002 * 109.47070 * 270.17383 * 24 23 7 26 26 C 1.52998 * 117.49553 * 243.61909 * 25 24 23 27 27 C 1.53000 * 117.49877 * 174.99687 * 25 24 23 28 28 H 4.40888 * 5.52187 * 179.97438 * 4 1 2 29 29 H 1.08992 * 109.47183 * 215.51324 * 3 2 1 30 30 H 1.09004 * 109.46476 * 95.51336 * 3 2 1 31 31 H 1.09005 * 109.47323 * 319.79012 * 5 4 3 32 32 H 1.08997 * 109.47471 * 79.79261 * 5 4 3 33 33 H 1.09001 * 109.46892 * 184.96071 * 6 5 4 34 34 H 1.08997 * 109.46613 * 304.95594 * 6 5 4 35 35 H 1.08992 * 109.47077 * 64.95493 * 6 5 4 36 36 H 1.08998 * 109.47213 * 300.00464 * 13 11 10 37 37 H 1.09005 * 109.46709 * 60.00497 * 13 11 10 38 38 H 1.08994 * 109.47278 * 179.97438 * 13 11 10 39 39 H 1.09000 * 109.46996 * 295.00215 * 14 11 10 40 40 H 1.09008 * 109.46822 * 54.99521 * 14 11 10 41 41 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.46960 * 30.16777 * 24 23 7 43 43 H 1.08997 * 109.47556 * 150.17239 * 24 23 7 44 44 H 1.08999 * 115.55032 * 29.32905 * 25 24 23 45 45 H 1.09000 * 117.49985 * 0.02562 * 26 25 24 46 46 H 1.09003 * 117.49389 * 145.01876 * 26 25 24 47 47 H 1.08993 * 117.50112 * 214.97593 * 27 25 24 48 48 H 1.09001 * 117.50096 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1363 -1.2596 0.5739 5 6 2.6804 -2.4107 -0.2166 6 6 2.7673 -3.6798 0.6335 7 6 4.5175 -1.2500 0.6862 8 7 5.3478 -2.1277 0.1744 9 7 6.5569 -1.8114 0.4740 10 6 6.5698 -0.7219 1.1884 11 6 7.7899 -0.0272 1.7360 12 1 7.4844 0.8584 2.2933 13 6 8.5447 -0.9794 2.6658 14 6 8.7028 0.3872 0.5802 15 6 9.8606 1.1886 1.1170 16 1 9.9380 1.3825 2.1766 17 6 10.8213 1.6742 0.2553 18 7 11.8315 2.3739 0.7237 19 14 10.6870 1.3392 -1.5775 20 1 9.9118 2.4282 -2.2242 21 1 12.0472 1.2802 -2.1708 22 1 9.9957 0.0431 -1.7946 23 7 5.2706 -0.3293 1.3549 24 6 4.7877 0.8397 2.0942 25 6 4.7070 2.0418 1.1511 26 6 5.6156 3.2360 1.4496 27 6 4.1107 3.3367 1.7066 28 1 -1.0498 -0.0003 0.0003 29 1 3.0090 0.8373 0.5969 30 1 3.0092 0.0996 -1.0230 31 1 1.6478 -2.2518 -0.5277 32 1 3.3126 -2.5197 -1.0978 33 1 2.5134 -4.5452 0.0214 34 1 3.7813 -3.7912 1.0173 35 1 2.0691 -3.6071 1.4673 36 1 7.8944 -1.2746 3.4892 37 1 8.8503 -1.8650 2.1086 38 1 9.4274 -0.4771 3.0615 39 1 9.0794 -0.5035 0.0774 40 1 8.1388 0.9935 -0.1287 41 1 12.5075 2.7152 0.1176 42 1 3.7982 0.6294 2.5003 43 1 5.4752 1.0633 2.9098 44 1 4.5121 1.8063 0.1049 45 1 6.2712 3.1651 2.3175 46 1 6.0189 3.7863 0.5995 47 1 3.5240 3.9533 1.0258 48 1 3.7763 3.3324 2.7441 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520527222.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:51 Heat of formation + Delta-G solvation = 168.168592 kcal Electronic energy + Delta-G solvation = -27480.196910 eV Core-core repulsion = 23960.580941 eV Total energy + Delta-G solvation = -3519.615970 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.80616 -38.45211 -37.86095 -35.34384 -34.16467 -33.47809 -32.21454 -30.88745 -29.10462 -27.90644 -27.44580 -25.94721 -23.97868 -23.43467 -22.46983 -21.77977 -21.39223 -20.16119 -19.06925 -18.46157 -17.62317 -16.89823 -16.30767 -16.06030 -15.51170 -15.14095 -14.94938 -14.30981 -14.26986 -14.00564 -13.86367 -13.69710 -13.38417 -12.95468 -12.62151 -12.21063 -12.07465 -12.05564 -11.97173 -11.61241 -11.44095 -11.27257 -11.14365 -11.05516 -11.00023 -10.78827 -10.63342 -10.51521 -10.36797 -10.19214 -10.14162 -9.95503 -9.89492 -9.73532 -9.46976 -9.17741 -8.54702 -8.01426 -6.06342 -4.04420 1.84506 2.29006 2.50120 2.54757 3.21245 3.31372 3.40343 3.49318 3.55448 3.66758 3.97705 4.41433 4.46068 4.55362 4.71234 4.77263 4.81523 4.92122 4.93837 4.99527 5.08545 5.19353 5.28168 5.30428 5.36550 5.44095 5.47316 5.49782 5.60172 5.80141 5.81990 5.85799 5.94090 5.96993 6.02143 6.05135 6.13093 6.21257 6.25634 6.55192 6.64635 6.71452 6.75799 7.00567 7.18614 7.24291 7.30959 7.41766 7.74939 8.48152 8.96346 9.13024 9.56563 11.06301 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.014260 B = 0.004237 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.096063 B = 6606.277617 C = 7406.758796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.182 4.182 3 C 0.147 3.853 4 N -0.446 5.446 5 C 0.064 3.936 6 C -0.143 4.143 7 C 0.335 3.665 8 N -0.316 5.316 9 N -0.286 5.286 10 C 0.214 3.786 11 C 0.010 3.990 12 H 0.077 0.923 13 C -0.129 4.129 14 C 0.004 3.996 15 C -0.516 4.516 16 H 0.076 0.924 17 C 0.072 3.928 18 N -0.901 5.901 19 Si 0.871 3.129 20 H -0.279 1.279 21 H -0.287 1.287 22 H -0.261 1.261 23 N -0.480 5.480 24 C 0.138 3.862 25 C -0.191 4.191 26 C -0.158 4.158 27 C -0.170 4.170 28 H 0.221 0.779 29 H 0.116 0.884 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.034 0.966 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.030 0.970 40 H 0.009 0.991 41 H 0.263 0.737 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.108 0.892 45 H 0.105 0.895 46 H 0.101 0.899 47 H 0.097 0.903 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.663 -1.863 1.974 22.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.182 4.182 3 C 0.022 3.978 4 N -0.170 5.170 5 C -0.062 4.062 6 C -0.201 4.201 7 C -0.021 4.021 8 N -0.160 5.160 9 N -0.123 5.123 10 C -0.053 4.053 11 C -0.011 4.011 12 H 0.095 0.905 13 C -0.187 4.187 14 C -0.035 4.035 15 C -0.554 4.554 16 H 0.094 0.906 17 C -0.129 4.129 18 N -0.540 5.540 19 Si 0.698 3.302 20 H -0.205 1.205 21 H -0.213 1.213 22 H -0.186 1.186 23 N -0.174 5.174 24 C 0.015 3.985 25 C -0.210 4.210 26 C -0.195 4.195 27 C -0.207 4.207 28 H 0.237 0.763 29 H 0.133 0.867 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.048 0.952 40 H 0.027 0.973 41 H 0.073 0.927 42 H 0.117 0.883 43 H 0.120 0.880 44 H 0.126 0.874 45 H 0.124 0.876 46 H 0.119 0.881 47 H 0.116 0.884 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -22.205 -3.063 1.630 22.474 hybrid contribution -0.495 1.202 -1.076 1.687 sum -22.700 -1.861 0.554 22.783 Atomic orbital electron populations 1.24892 0.95758 0.98890 1.00582 1.22434 0.93615 1.01469 1.00707 1.19513 0.85837 0.92329 1.00138 1.58732 1.02441 1.04450 1.51357 1.22136 1.00141 0.88579 0.95379 1.21701 1.03272 0.95402 0.99721 1.22380 0.89792 0.91535 0.98422 1.74552 0.95915 1.23785 1.21765 1.74016 1.11976 1.11759 1.14548 1.25562 0.85020 0.94901 0.99818 1.19734 0.87259 0.95779 0.98329 0.90473 1.21705 1.00096 0.99407 0.97454 1.19565 0.94217 0.97040 0.92661 1.21007 1.05870 1.32542 0.95950 0.90588 1.24918 0.95032 0.94506 0.98472 1.69891 1.12502 1.36370 1.35261 0.86906 0.77425 0.79677 0.86195 1.20527 1.21315 1.18575 1.46246 1.06994 1.22354 1.41853 1.21482 1.01631 0.81811 0.93552 1.22708 1.08480 0.89714 1.00116 1.23122 0.92475 0.99489 1.04365 1.22994 0.97350 0.98248 1.02142 0.76257 0.86663 0.91337 0.90029 0.91957 0.91925 0.91281 0.92678 0.94735 0.92097 0.90176 0.95165 0.97274 0.92715 0.88311 0.87950 0.87399 0.87621 0.88051 0.88425 0.88357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 19.25 29.55 0.57 -0.92 16 2 C -0.18 -1.82 11.94 -37.12 -0.44 -2.27 16 3 C 0.15 1.63 4.87 -6.61 -0.03 1.60 16 4 N -0.45 -5.74 4.52 -177.84 -0.80 -6.55 16 5 C 0.06 0.76 5.27 -3.82 -0.02 0.74 16 6 C -0.14 -1.65 10.00 37.16 0.37 -1.28 16 7 C 0.33 5.32 6.74 -318.87 -2.15 3.17 16 8 N -0.32 -5.97 10.03 30.31 0.30 -5.67 16 9 N -0.29 -5.94 12.18 32.99 0.40 -5.54 16 10 C 0.21 4.02 6.58 -154.02 -1.01 3.01 16 11 C 0.01 0.19 2.70 -91.77 -0.25 -0.05 16 12 H 0.08 1.38 6.95 -51.93 -0.36 1.02 16 13 C -0.13 -2.38 8.99 37.16 0.33 -2.04 16 14 C 0.00 0.08 3.50 -27.88 -0.10 -0.01 16 15 C -0.52 -13.85 8.96 -34.44 -0.31 -14.16 16 16 H 0.08 2.14 7.30 -52.49 -0.38 1.75 16 17 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 18 N -0.90 -26.95 13.96 55.43 0.77 -26.18 16 19 Si 0.87 21.79 27.47 -169.99 -4.67 17.12 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.26 -6.54 6.54 56.52 0.37 -6.17 16 23 N -0.48 -7.43 2.81 -114.08 -0.32 -7.75 16 24 C 0.14 1.61 5.27 -4.04 -0.02 1.59 16 25 C -0.19 -2.11 4.30 -90.62 -0.39 -2.50 16 26 C -0.16 -1.82 10.18 -26.73 -0.27 -2.09 16 27 C -0.17 -1.49 10.25 -26.73 -0.27 -1.76 16 28 H 0.22 0.97 7.80 -54.10 -0.42 0.55 16 29 H 0.12 1.20 3.41 -51.93 -0.18 1.02 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.83 6.60 -51.93 -0.34 0.49 16 32 H 0.06 0.82 7.51 -51.93 -0.39 0.43 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.98 6.83 -51.93 -0.35 0.63 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.08 1.55 6.95 -51.93 -0.36 1.19 16 39 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 40 H 0.01 0.22 7.57 -51.92 -0.39 -0.18 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.10 0.99 7.67 -51.93 -0.40 0.59 16 43 H 0.10 1.13 6.97 -51.93 -0.36 0.77 16 44 H 0.11 1.30 7.01 -51.93 -0.36 0.93 16 45 H 0.11 1.25 8.03 -51.93 -0.42 0.84 16 46 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 47 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 48 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 387.21 15.07 5.84 5.84 Total: -1.00 -32.31 387.21 -10.22 -42.53 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -7.65 Total: 1.22 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -4.09 Total: -15.02 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: 0.36 Total: -51.69 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.31 -10.22 -42.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520527222.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.696 kcal (2) G-P(sol) polarization free energy of solvation -32.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 168.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds