Wall clock time and date at job start Tue Mar 31 2020 12:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46899 * 109.47244 * 335.51887 * 3 2 1 5 5 C 1.46895 * 111.00356 * 60.73945 * 4 3 2 6 6 C 1.53005 * 109.47298 * 199.79216 * 5 4 3 7 7 C 1.38585 * 111.00086 * 184.69581 * 4 3 2 8 8 N 1.31214 * 126.47302 * 236.02102 * 7 4 3 9 9 N 1.28522 * 109.85809 * 179.97438 * 8 7 4 10 10 C 1.30291 * 110.05860 * 359.97438 * 9 8 7 11 11 C 1.50700 * 126.34989 * 180.02562 * 10 9 8 12 12 H 1.09005 * 109.47353 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47161 * 300.01702 * 11 10 9 14 14 C 1.53001 * 109.47566 * 60.02024 * 11 10 9 15 15 C 1.50697 * 109.47276 * 174.99898 * 14 11 10 16 16 H 1.08000 * 120.00159 * 0.02562 * 15 14 11 17 17 C 1.37880 * 119.99862 * 180.02562 * 15 14 11 18 18 N 1.31511 * 120.00073 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 119.99786 * 0.02562 * 17 15 14 20 20 H 1.48492 * 109.47104 * 90.00283 * 19 17 15 21 21 H 1.48506 * 109.46556 * 209.99872 * 19 17 15 22 22 H 1.48498 * 109.47396 * 329.99702 * 19 17 15 23 23 N 1.36453 * 126.47124 * 56.32750 * 7 4 3 24 24 C 1.46501 * 127.14044 * 0.02562 * 23 7 4 25 25 C 1.53002 * 109.47070 * 270.17383 * 24 23 7 26 26 C 1.52998 * 117.49553 * 243.61909 * 25 24 23 27 27 C 1.53000 * 117.49877 * 174.99687 * 25 24 23 28 28 H 4.40888 * 5.52187 * 179.97438 * 4 1 2 29 29 H 1.08992 * 109.47183 * 215.51324 * 3 2 1 30 30 H 1.09004 * 109.46476 * 95.51336 * 3 2 1 31 31 H 1.09005 * 109.47323 * 319.79012 * 5 4 3 32 32 H 1.08997 * 109.47471 * 79.79261 * 5 4 3 33 33 H 1.09001 * 109.46892 * 184.96071 * 6 5 4 34 34 H 1.08997 * 109.46613 * 304.95594 * 6 5 4 35 35 H 1.08992 * 109.47077 * 64.95493 * 6 5 4 36 36 H 1.08998 * 109.47213 * 300.00464 * 13 11 10 37 37 H 1.09005 * 109.46709 * 60.00497 * 13 11 10 38 38 H 1.08994 * 109.47278 * 179.97438 * 13 11 10 39 39 H 1.09000 * 109.46996 * 295.00215 * 14 11 10 40 40 H 1.09008 * 109.46822 * 54.99521 * 14 11 10 41 41 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.46960 * 30.16777 * 24 23 7 43 43 H 1.08997 * 109.47556 * 150.17239 * 24 23 7 44 44 H 1.08999 * 115.55032 * 29.32905 * 25 24 23 45 45 H 1.09000 * 117.49985 * 0.02562 * 26 25 24 46 46 H 1.09003 * 117.49389 * 145.01876 * 26 25 24 47 47 H 1.08993 * 117.50112 * 214.97593 * 27 25 24 48 48 H 1.09001 * 117.50096 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1363 -1.2596 0.5739 5 6 2.6804 -2.4107 -0.2166 6 6 2.7673 -3.6798 0.6335 7 6 4.5175 -1.2500 0.6862 8 7 5.3478 -2.1277 0.1744 9 7 6.5569 -1.8114 0.4740 10 6 6.5698 -0.7219 1.1884 11 6 7.7899 -0.0272 1.7360 12 1 7.4844 0.8584 2.2933 13 6 8.5447 -0.9794 2.6658 14 6 8.7028 0.3872 0.5802 15 6 9.8606 1.1886 1.1170 16 1 9.9380 1.3825 2.1766 17 6 10.8213 1.6742 0.2553 18 7 11.8315 2.3739 0.7237 19 14 10.6870 1.3392 -1.5775 20 1 9.9118 2.4282 -2.2242 21 1 12.0472 1.2802 -2.1708 22 1 9.9957 0.0431 -1.7946 23 7 5.2706 -0.3293 1.3549 24 6 4.7877 0.8397 2.0942 25 6 4.7070 2.0418 1.1511 26 6 5.6156 3.2360 1.4496 27 6 4.1107 3.3367 1.7066 28 1 -1.0498 -0.0003 0.0003 29 1 3.0090 0.8373 0.5969 30 1 3.0092 0.0996 -1.0230 31 1 1.6478 -2.2518 -0.5277 32 1 3.3126 -2.5197 -1.0978 33 1 2.5134 -4.5452 0.0214 34 1 3.7813 -3.7912 1.0173 35 1 2.0691 -3.6071 1.4673 36 1 7.8944 -1.2746 3.4892 37 1 8.8503 -1.8650 2.1086 38 1 9.4274 -0.4771 3.0615 39 1 9.0794 -0.5035 0.0774 40 1 8.1388 0.9935 -0.1287 41 1 12.5075 2.7152 0.1176 42 1 3.7982 0.6294 2.5003 43 1 5.4752 1.0633 2.9098 44 1 4.5121 1.8063 0.1049 45 1 6.2712 3.1651 2.3175 46 1 6.0189 3.7863 0.5995 47 1 3.5240 3.9533 1.0258 48 1 3.7763 3.3324 2.7441 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520527222.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:50 Heat of formation + Delta-G solvation = 152.314266 kcal Electronic energy + Delta-G solvation = -27480.884406 eV Core-core repulsion = 23960.580941 eV Total energy + Delta-G solvation = -3520.303465 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.12250 -39.47667 -38.78499 -37.00880 -35.36836 -34.38295 -34.12433 -31.86583 -30.50088 -29.37213 -28.81948 -26.92199 -25.66124 -24.53646 -23.34374 -23.28214 -22.51218 -21.23909 -20.53642 -19.22291 -19.08580 -18.56575 -17.39792 -17.27344 -16.51205 -16.32743 -16.14317 -15.90089 -15.39631 -15.25356 -15.12690 -14.87344 -14.61165 -14.50760 -13.95721 -13.77951 -13.18625 -13.13838 -13.04037 -12.95113 -12.89019 -12.59888 -12.45590 -12.39770 -12.23608 -12.02246 -11.87568 -11.83098 -11.63897 -11.56591 -11.39396 -11.29933 -11.18263 -11.06986 -10.98332 -10.76464 -10.70660 -9.30326 -8.27139 -6.27670 0.65818 1.13262 1.29729 1.35221 1.47266 1.61724 1.83232 1.90845 2.35313 2.67283 2.74590 3.08728 3.25187 3.37059 3.57445 3.65351 3.80545 3.87303 3.92135 3.98901 4.06605 4.11290 4.17515 4.29033 4.34250 4.40639 4.47760 4.49762 4.53372 4.65083 4.79514 4.87465 4.88832 4.98496 5.01517 5.03796 5.05237 5.10509 5.12073 5.23183 5.24281 5.25151 5.34704 5.45333 5.54420 5.58110 5.69496 6.11627 6.29391 6.61693 6.77713 7.35959 7.75836 8.88278 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.014260 B = 0.004237 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.096063 B = 6606.277617 C = 7406.758796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.229 4.229 3 C 0.151 3.849 4 N -0.441 5.441 5 C 0.064 3.936 6 C -0.137 4.137 7 C 0.352 3.648 8 N -0.347 5.347 9 N -0.322 5.322 10 C 0.204 3.796 11 C 0.019 3.981 12 H 0.092 0.908 13 C -0.122 4.122 14 C 0.013 3.987 15 C -0.508 4.508 16 H 0.057 0.943 17 C 0.021 3.979 18 N -0.941 5.941 19 Si 0.925 3.075 20 H -0.269 1.269 21 H -0.282 1.282 22 H -0.264 1.264 23 N -0.473 5.473 24 C 0.133 3.867 25 C -0.198 4.198 26 C -0.183 4.183 27 C -0.133 4.133 28 H 0.256 0.744 29 H 0.121 0.879 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.038 0.962 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.046 0.954 38 H 0.066 0.934 39 H 0.011 0.989 40 H 0.004 0.996 41 H 0.265 0.735 42 H 0.122 0.878 43 H 0.110 0.890 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.086 0.914 47 H 0.112 0.888 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.429 -1.469 2.185 26.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.229 4.229 3 C 0.026 3.974 4 N -0.165 5.165 5 C -0.062 4.062 6 C -0.195 4.195 7 C -0.005 4.005 8 N -0.192 5.192 9 N -0.159 5.159 10 C -0.065 4.065 11 C -0.002 4.002 12 H 0.111 0.889 13 C -0.180 4.180 14 C -0.025 4.025 15 C -0.546 4.546 16 H 0.075 0.925 17 C -0.177 4.177 18 N -0.582 5.582 19 Si 0.750 3.250 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.189 1.189 23 N -0.168 5.168 24 C 0.012 3.988 25 C -0.217 4.217 26 C -0.220 4.220 27 C -0.171 4.171 28 H 0.272 0.728 29 H 0.139 0.861 30 H 0.078 0.922 31 H 0.122 0.878 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.030 0.970 40 H 0.022 0.978 41 H 0.074 0.926 42 H 0.140 0.860 43 H 0.128 0.872 44 H 0.115 0.885 45 H 0.117 0.883 46 H 0.104 0.896 47 H 0.130 0.870 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -25.997 -2.656 1.845 26.197 hybrid contribution 0.513 1.085 -1.091 1.622 sum -25.483 -1.571 0.753 25.543 Atomic orbital electron populations 1.25745 0.96426 0.96222 0.98021 1.22359 0.93628 1.03883 1.03054 1.19437 0.87115 0.91256 0.99587 1.58882 1.00201 1.05817 1.51601 1.22204 1.00890 0.88431 0.94672 1.21657 1.01607 0.96006 1.00246 1.22667 0.90801 0.90350 0.96647 1.74468 0.95767 1.25452 1.23492 1.73919 1.13409 1.13009 1.15604 1.25153 0.85983 0.94958 1.00455 1.19494 0.87132 0.96671 0.96904 0.88948 1.21612 1.00021 0.98436 0.97906 1.19372 0.93808 0.95446 0.93906 1.21237 1.06512 1.31774 0.95109 0.92517 1.25623 0.94994 0.94703 1.02353 1.69998 1.13545 1.38003 1.36678 0.86037 0.77578 0.79501 0.81843 1.19453 1.20784 1.18875 1.46334 1.05803 1.23028 1.41600 1.21821 1.02849 0.80658 0.93492 1.22628 1.09405 0.90036 0.99631 1.23104 0.94523 1.00515 1.03833 1.23106 0.94847 0.95589 1.03521 0.72822 0.86116 0.92236 0.87773 0.93663 0.90235 0.94304 0.91617 0.92037 0.93440 0.91483 0.97034 0.97757 0.92560 0.86013 0.87183 0.88533 0.88288 0.89584 0.86999 0.86148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 19.25 74.32 1.43 -0.32 16 2 C -0.23 -3.90 11.94 31.13 0.37 -3.53 16 3 C 0.15 3.07 4.87 84.50 0.41 3.48 16 4 N -0.44 -10.72 4.52 -716.57 -3.24 -13.95 16 5 C 0.06 1.44 5.27 86.31 0.45 1.89 16 6 C -0.14 -2.99 10.00 71.98 0.72 -2.27 16 7 C 0.35 11.02 6.74 260.11 1.75 12.77 16 8 N -0.35 -13.32 10.03 -58.00 -0.58 -13.90 16 9 N -0.32 -13.66 12.18 -49.54 -0.60 -14.26 16 10 C 0.20 7.66 6.58 137.64 0.91 8.57 16 11 C 0.02 0.74 2.70 -11.54 -0.03 0.71 16 12 H 0.09 3.28 6.95 -2.38 -0.02 3.27 16 13 C -0.12 -4.53 8.99 71.98 0.65 -3.89 16 14 C 0.01 0.63 3.50 29.85 0.10 0.73 16 15 C -0.51 -27.90 8.96 25.60 0.23 -27.67 16 16 H 0.06 3.28 7.30 -2.91 -0.02 3.26 16 17 C 0.02 1.21 5.47 84.66 0.46 1.67 16 18 N -0.94 -57.39 13.96 21.45 0.30 -57.09 16 19 Si 0.92 45.60 27.47 68.60 1.88 47.48 16 20 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 21 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 22 H -0.26 -13.06 6.54 99.48 0.65 -12.41 16 23 N -0.47 -14.30 2.81 -514.85 -1.44 -15.75 16 24 C 0.13 2.85 5.27 86.38 0.46 3.31 16 25 C -0.20 -4.06 4.30 -10.79 -0.05 -4.11 16 26 C -0.18 -4.05 10.18 30.59 0.31 -3.74 16 27 C -0.13 -1.94 10.25 30.59 0.31 -1.63 16 28 H 0.26 0.85 7.80 -4.43 -0.03 0.82 16 29 H 0.12 2.25 3.41 -2.39 -0.01 2.24 16 30 H 0.06 1.30 8.14 -2.38 -0.02 1.29 16 31 H 0.10 1.87 6.60 -2.38 -0.02 1.85 16 32 H 0.04 1.18 7.51 -2.39 -0.02 1.16 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.04 1.09 6.83 -2.39 -0.02 1.07 16 35 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 38 H 0.07 2.64 6.95 -2.39 -0.02 2.63 16 39 H 0.01 0.59 7.20 -2.39 -0.02 0.57 16 40 H 0.00 0.20 7.57 -2.38 -0.02 0.18 16 41 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 42 H 0.12 2.06 7.67 -2.39 -0.02 2.04 16 43 H 0.11 2.21 6.97 -2.39 -0.02 2.19 16 44 H 0.10 2.24 7.01 -2.39 -0.02 2.22 16 45 H 0.10 2.30 8.03 -2.39 -0.02 2.28 16 46 H 0.09 2.14 8.14 -2.39 -0.02 2.13 16 47 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 48 H 0.12 1.27 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -71.83 387.21 5.70 -66.14 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.89 Total: 15.38 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: 8.49 Total: -14.04 kcal Atomic # 7 Polarization: -109.39 SS G_CDS: -5.57 Total: -114.96 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.88 Total: 47.48 kcal Total: -71.83 5.70 -66.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520527222.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.451 kcal (2) G-P(sol) polarization free energy of solvation -71.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds