Wall clock time and date at job start Tue Mar 31 2020 11:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00480 * 2 1 4 4 H 1.48507 * 109.46796 * 270.00369 * 3 2 1 5 5 H 1.48499 * 109.46859 * 30.00150 * 3 2 1 6 6 H 1.48499 * 109.47298 * 150.00534 * 3 2 1 7 7 C 1.37883 * 119.99554 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99744 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99966 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47138 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47138 * 180.02562 * 10 9 7 12 12 N 1.30296 * 126.35052 * 270.03961 * 11 10 9 13 13 N 1.28530 * 110.05490 * 179.69045 * 12 11 10 14 14 C 1.31217 * 109.85654 * 0.45945 * 13 12 11 15 15 N 1.38580 * 126.46783 * 179.81923 * 14 13 12 16 16 C 1.47168 * 111.00021 * 297.48295 * 15 14 13 17 17 C 1.51141 * 107.92126 * 199.75832 * 16 15 14 18 18 C 1.52377 * 110.97474 * 304.53102 * 17 16 15 19 19 H 1.09002 * 114.97768 * 165.80016 * 18 17 16 20 20 C 1.52359 * 119.51229 * 311.88186 * 18 17 16 21 21 C 1.52407 * 118.06724 * 22.07378 * 18 17 16 22 22 H 1.08997 * 117.38358 * 142.85551 * 21 18 17 23 23 C 1.46744 * 110.99995 * 60.56471 * 15 14 13 24 24 N 1.36451 * 107.05844 * 359.55687 * 14 13 12 25 25 C 1.46498 * 127.13495 * 180.24182 * 24 14 13 26 26 C 1.53007 * 109.46953 * 84.94014 * 25 24 14 27 27 C 1.52998 * 117.49706 * 243.62099 * 26 25 24 28 28 C 1.52995 * 117.49829 * 174.99615 * 26 25 24 29 29 H 0.97004 * 119.99873 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.46809 * 60.00040 * 9 7 2 31 31 H 1.08999 * 109.47086 * 300.00180 * 9 7 2 32 32 H 1.09000 * 109.47323 * 60.00068 * 10 9 7 33 33 H 1.08999 * 109.47554 * 300.00229 * 10 9 7 34 34 H 1.09001 * 109.61489 * 319.32429 * 16 15 14 35 35 H 1.08996 * 109.61351 * 79.68313 * 16 15 14 36 36 H 1.09003 * 109.14690 * 183.90313 * 17 16 15 37 37 H 1.08996 * 108.61423 * 64.81455 * 17 16 15 38 38 H 1.09002 * 117.52534 * 214.94360 * 20 18 17 39 39 H 1.09002 * 117.52312 * 0.05500 * 20 18 17 40 40 H 1.09002 * 109.36231 * 60.32956 * 23 15 14 41 41 H 1.09002 * 109.25573 * 300.66615 * 23 15 14 42 42 H 1.08998 * 109.46734 * 204.93225 * 25 24 14 43 43 H 1.08998 * 109.47296 * 324.93605 * 25 24 14 44 44 H 1.09005 * 115.54729 * 29.32656 * 26 25 24 45 45 H 1.08998 * 117.49663 * 359.97438 * 27 26 25 46 46 H 1.08992 * 117.50126 * 145.02512 * 27 26 25 47 47 H 1.08998 * 117.50354 * 214.98055 * 28 26 25 48 48 H 1.09001 * 117.50005 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4468 2.6526 0.7001 6 1 3.5469 1.4400 0.6999 7 6 2.0045 -1.1942 -0.0005 8 1 1.4643 -2.1295 -0.0005 9 6 3.5115 -1.1943 -0.0011 10 6 4.0213 -2.6367 -0.0010 11 6 5.5283 -2.6369 -0.0009 12 7 6.3006 -2.6363 -1.0503 13 7 7.5343 -2.6301 -0.6896 14 6 7.6158 -2.6362 0.6200 15 7 8.7792 -2.6360 1.3729 16 6 9.5706 -3.8510 1.1211 17 6 10.5249 -4.0327 2.2790 18 6 11.3826 -2.7893 2.4792 19 1 11.9163 -2.7463 3.4286 20 6 12.0752 -2.1542 1.2799 21 6 10.8656 -1.4653 1.9292 22 1 11.0566 -0.5687 2.5188 23 6 9.5825 -1.4388 1.0992 24 7 6.3387 -2.6369 1.1005 25 6 5.9222 -2.6380 2.5050 26 6 5.8988 -1.2014 3.0311 27 6 6.8706 -0.8459 4.1581 28 6 5.3746 -0.9775 4.4509 29 1 -0.4850 0.8401 0.0004 30 1 3.8751 -0.6807 0.8889 31 1 3.8745 -0.6802 -0.8911 32 1 3.6576 -3.1508 -0.8907 33 1 3.6583 -3.1504 0.8892 34 1 8.9063 -4.7124 1.0511 35 1 10.1252 -3.7398 0.1894 36 1 11.1695 -4.8888 2.0800 37 1 9.9443 -4.2210 3.1820 38 1 13.0563 -1.7081 1.4428 39 1 11.9269 -2.6220 0.3066 40 1 9.0052 -0.5501 1.3546 41 1 9.8378 -1.4116 0.0398 42 1 4.9256 -3.0716 2.5881 43 1 6.6255 -3.2286 3.0921 44 1 5.6855 -0.4323 2.2887 45 1 7.5263 -1.6355 4.5250 46 1 7.2969 0.1572 4.1574 47 1 4.8168 -0.0610 4.6429 48 1 5.0468 -1.8537 5.0104 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001521087320.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:50 Heat of formation + Delta-G solvation = 131.075104 kcal Electronic energy + Delta-G solvation = -27420.786859 eV Core-core repulsion = 23899.562395 eV Total energy + Delta-G solvation = -3521.224464 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.73218 -40.00594 -37.70220 -35.67918 -34.49271 -33.65849 -31.93377 -31.54924 -28.97336 -27.62389 -26.21388 -25.34066 -24.28171 -22.43104 -21.72411 -21.54661 -21.45129 -20.84504 -19.71804 -18.60677 -17.59732 -16.88992 -16.55020 -16.19135 -15.63793 -15.20876 -14.86172 -14.41994 -14.29091 -14.19283 -14.00205 -13.52462 -13.34114 -12.98159 -12.95197 -12.75820 -12.62806 -11.94202 -11.75043 -11.62753 -11.59958 -11.55035 -11.32743 -11.11183 -11.04025 -10.66276 -10.51721 -10.40957 -10.27034 -10.08403 -10.02062 -9.99620 -9.86303 -9.78253 -9.29880 -8.80386 -8.59263 -8.54735 -6.10427 -4.09413 1.96352 2.40663 3.14132 3.27946 3.35239 3.38085 3.38606 3.66098 3.81990 4.35087 4.40253 4.45943 4.57432 4.61221 4.71272 4.74154 4.83006 4.90749 4.97938 5.01657 5.04350 5.23638 5.24040 5.25384 5.30435 5.41883 5.46778 5.49164 5.51889 5.60426 5.61339 5.70011 5.81115 5.84518 5.85649 5.89796 5.91928 6.07324 6.12599 6.21008 6.28222 6.32894 6.51184 6.56960 6.85307 7.14117 7.26889 7.40663 7.68878 8.43921 8.92910 9.05732 9.51516 11.02565 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.017521 B = 0.003794 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.724980 B = 7377.774232 C = 7852.327926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.877 3.123 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.521 4.521 8 H 0.076 0.924 9 C -0.003 4.003 10 C -0.022 4.022 11 C 0.211 3.789 12 N -0.297 5.297 13 N -0.315 5.315 14 C 0.324 3.676 15 N -0.451 5.451 16 C 0.063 3.937 17 C -0.083 4.083 18 C -0.129 4.129 19 H 0.103 0.897 20 C -0.182 4.182 21 C -0.146 4.146 22 H 0.110 0.890 23 C 0.097 3.903 24 N -0.460 5.460 25 C 0.148 3.852 26 C -0.169 4.169 27 C -0.168 4.168 28 C -0.167 4.167 29 H 0.264 0.736 30 H 0.016 0.984 31 H 0.019 0.981 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.056 0.944 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.110 0.890 45 H 0.097 0.903 46 H 0.091 0.909 47 H 0.098 0.902 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.240 -5.942 10.668 25.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.559 4.559 8 H 0.094 0.906 9 C -0.042 4.042 10 C -0.062 4.062 11 C -0.056 4.056 12 N -0.137 5.137 13 N -0.159 5.159 14 C -0.033 4.033 15 N -0.176 5.176 16 C -0.064 4.064 17 C -0.120 4.120 18 C -0.148 4.148 19 H 0.121 0.879 20 C -0.219 4.219 21 C -0.165 4.165 22 H 0.128 0.872 23 C -0.030 4.030 24 N -0.152 5.152 25 C 0.025 3.975 26 C -0.188 4.188 27 C -0.205 4.205 28 C -0.204 4.204 29 H 0.074 0.926 30 H 0.034 0.966 31 H 0.038 0.962 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.074 0.926 42 H 0.119 0.881 43 H 0.113 0.887 44 H 0.128 0.872 45 H 0.115 0.885 46 H 0.109 0.891 47 H 0.117 0.883 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 22.372 -5.827 9.728 25.082 hybrid contribution 0.192 1.140 0.597 1.301 sum 22.564 -4.687 10.326 25.253 Atomic orbital electron populations 1.69899 1.06211 1.26977 1.50708 1.24945 0.94667 0.98984 0.94380 0.86828 0.80153 0.83834 0.78757 1.20096 1.21310 1.19342 1.21003 0.88746 0.94714 1.51437 0.90610 1.19545 0.97389 0.90323 0.96899 1.20240 0.80350 1.01994 1.03646 1.25658 0.97483 1.00955 0.81495 1.74063 0.95763 1.19797 1.24046 1.74508 1.13393 1.19824 1.08144 1.22165 0.85346 1.06941 0.88820 1.58942 1.02186 1.04267 1.52213 1.21927 0.95397 0.91102 0.97999 1.20617 0.96297 0.96241 0.98883 1.21848 1.01358 0.93526 0.98066 0.87876 1.23208 0.96687 1.04294 0.97717 1.22283 0.93865 0.97325 1.02999 0.87202 1.21619 0.91840 0.91387 0.98185 1.46326 1.05785 1.54576 1.08498 1.21363 1.02128 0.96362 0.77636 1.22524 1.06117 0.97254 0.92884 1.22996 0.92548 1.02792 1.02140 1.22950 0.96711 1.03752 0.97021 0.92614 0.96625 0.96245 0.88729 0.90609 0.90536 0.92759 0.90814 0.90588 0.88671 0.88672 0.90148 0.92569 0.88091 0.88665 0.87228 0.88471 0.89085 0.88331 0.88442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.96 55.43 0.77 -26.39 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.52 -14.32 9.66 -34.44 -0.33 -14.65 16 8 H 0.08 2.20 7.99 -52.48 -0.42 1.78 16 9 C 0.00 -0.07 4.02 -27.89 -0.11 -0.18 16 10 C -0.02 -0.44 5.52 -27.89 -0.15 -0.59 16 11 C 0.21 4.01 7.32 -154.01 -1.13 2.88 16 12 N -0.30 -6.18 12.18 32.99 0.40 -5.78 16 13 N -0.31 -6.00 12.13 30.31 0.37 -5.64 16 14 C 0.32 5.17 6.34 -318.88 -2.02 3.15 16 15 N -0.45 -5.58 4.62 -175.63 -0.81 -6.39 16 16 C 0.06 0.67 5.26 -4.61 -0.02 0.64 16 17 C -0.08 -0.65 6.04 -27.99 -0.17 -0.82 16 18 C -0.13 -0.99 6.18 -91.57 -0.57 -1.56 16 19 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 20 C -0.18 -1.41 9.66 -26.75 -0.26 -1.67 16 21 C -0.15 -1.29 6.32 -90.70 -0.57 -1.86 16 22 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 23 C 0.10 1.13 5.26 -3.99 -0.02 1.11 16 24 N -0.46 -7.38 2.81 -114.08 -0.32 -7.70 16 25 C 0.15 1.90 6.35 -4.04 -0.03 1.88 16 26 C -0.17 -2.21 6.01 -90.62 -0.54 -2.76 16 27 C -0.17 -1.76 10.18 -26.73 -0.27 -2.03 16 28 C -0.17 -1.84 10.25 -26.73 -0.27 -2.12 16 29 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.02 0.36 6.83 -51.93 -0.35 0.01 16 31 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 32 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 33 H 0.08 1.34 7.18 -51.93 -0.37 0.97 16 34 H 0.08 0.86 7.93 -51.93 -0.41 0.45 16 35 H 0.05 0.61 7.01 -51.93 -0.36 0.25 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.81 7.24 -51.93 -0.38 0.43 16 40 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.73 7.99 -51.93 -0.41 0.32 16 42 H 0.10 1.25 7.11 -51.93 -0.37 0.88 16 43 H 0.10 1.04 7.88 -51.93 -0.41 0.63 16 44 H 0.11 1.80 7.77 -51.93 -0.40 1.39 16 45 H 0.10 0.91 8.03 -51.93 -0.42 0.49 16 46 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 384.01 15.07 5.79 5.79 Total: -1.00 -31.93 384.01 -13.15 -45.07 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -8.10 Total: 0.61 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -6.57 Total: -16.62 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: 0.41 Total: -51.90 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.93 -13.15 -45.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521087320.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.150 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds