Wall clock time and date at job start Tue Mar 31 2020 11:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99780 * 2 1 4 4 H 1.48509 * 109.46947 * 269.99678 * 3 2 1 5 5 H 1.48496 * 109.47741 * 29.99575 * 3 2 1 6 6 H 1.48503 * 109.47294 * 150.00123 * 3 2 1 7 7 C 1.37870 * 119.99696 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00674 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99855 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47498 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47498 * 179.97438 * 10 9 7 12 12 N 1.30293 * 126.34735 * 90.02490 * 11 10 9 13 13 N 1.28533 * 110.05244 * 179.97438 * 12 11 10 14 14 C 1.31218 * 109.86004 * 359.97438 * 13 12 11 15 15 N 1.38576 * 126.47329 * 180.02562 * 14 13 12 16 16 C 1.47167 * 110.99732 * 273.96961 * 15 14 13 17 17 C 1.52995 * 108.58781 * 199.58820 * 16 15 14 18 18 C 1.52973 * 109.63774 * 305.87840 * 17 16 15 19 19 H 1.09004 * 115.39241 * 232.08342 * 18 17 16 20 20 C 1.51742 * 115.58716 * 89.40356 * 18 17 16 21 21 C 1.52360 * 60.15324 * 249.27956 * 20 18 17 22 22 H 1.09008 * 116.25676 * 253.57483 * 21 20 18 23 23 C 1.46742 * 110.99934 * 37.06825 * 15 14 13 24 24 N 1.36456 * 107.05200 * 359.76037 * 14 13 12 25 25 C 1.46498 * 127.13450 * 180.24636 * 24 14 13 26 26 C 1.53002 * 109.46897 * 266.69536 * 25 24 14 27 27 C 1.52997 * 117.49979 * 243.87518 * 26 25 24 28 28 C 1.53002 * 60.00290 * 252.51246 * 27 26 25 29 29 H 0.97004 * 120.00154 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47352 * 59.99698 * 9 7 2 31 31 H 1.09003 * 109.47188 * 300.00142 * 9 7 2 32 32 H 1.09003 * 109.46958 * 300.00211 * 10 9 7 33 33 H 1.09003 * 109.47124 * 59.99487 * 10 9 7 34 34 H 1.09001 * 109.62185 * 319.32022 * 16 15 14 35 35 H 1.09000 * 109.61713 * 79.86432 * 16 15 14 36 36 H 1.08998 * 109.44099 * 185.82256 * 17 16 15 37 37 H 1.09009 * 109.41274 * 65.91332 * 17 16 15 38 38 H 1.08998 * 117.67595 * 141.77786 * 20 18 17 39 39 H 1.09001 * 117.17315 * 356.99269 * 20 18 17 40 40 H 1.09005 * 109.29705 * 300.47254 * 23 15 14 41 41 H 1.08988 * 109.30113 * 60.06396 * 23 15 14 42 42 H 1.09006 * 109.47558 * 26.69377 * 25 24 14 43 43 H 1.09003 * 109.47631 * 146.69935 * 25 24 14 44 44 H 1.09000 * 115.55210 * 29.59105 * 26 25 24 45 45 H 1.08999 * 117.50440 * 0.02562 * 27 26 25 46 46 H 1.09003 * 117.49419 * 145.02303 * 27 26 25 47 47 H 1.09004 * 117.49599 * 252.51314 * 28 27 26 48 48 H 1.08999 * 117.49718 * 107.49346 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5285 -2.6366 0.0009 12 7 6.3008 -2.6371 1.0503 13 7 7.5345 -2.6375 0.6897 14 6 7.6160 -2.6378 -0.6200 15 7 8.7794 -2.6387 -1.3729 16 6 9.2748 -1.2684 -1.5798 17 6 10.2275 -1.2698 -2.7769 18 6 11.3220 -2.3166 -2.5616 19 1 12.3438 -1.9552 -2.6780 20 6 11.0070 -3.7093 -3.0751 21 6 11.0875 -3.4543 -1.5751 22 1 11.9709 -3.8412 -1.0669 23 6 9.8142 -3.4651 -0.7408 24 7 6.3389 -2.6430 -1.1004 25 6 5.9223 -2.6503 -2.5049 26 6 5.6942 -1.2128 -2.9766 27 6 4.2740 -0.8221 -3.3907 28 6 5.3597 -0.9988 -4.4543 29 1 -0.4850 0.8401 -0.0004 30 1 3.8745 -0.6800 0.8911 31 1 3.8752 -0.6804 -0.8888 32 1 3.6578 -3.1506 0.8907 33 1 3.6585 -3.1502 -0.8892 34 1 8.4357 -0.6023 -1.7806 35 1 9.8066 -0.9332 -0.6893 36 1 10.6825 -0.2847 -2.8795 37 1 9.6704 -1.5083 -3.6830 38 1 11.8177 -4.2750 -3.5341 39 1 10.0188 -3.8691 -3.5064 40 1 10.0312 -3.0730 0.2529 41 1 9.4532 -4.4897 -0.6529 42 1 6.7004 -3.1128 -3.1123 43 1 4.9969 -3.2172 -2.6066 44 1 6.3016 -0.4540 -2.4832 45 1 3.5021 -1.5890 -3.3268 46 1 3.9468 0.1938 -3.1695 47 1 5.7467 -0.0991 -4.9327 48 1 5.3021 -1.8821 -5.0903 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001521087327.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:54 Heat of formation + Delta-G solvation = 130.496920 kcal Electronic energy + Delta-G solvation = -27586.012648 eV Core-core repulsion = 24064.763112 eV Total energy + Delta-G solvation = -3521.249536 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.73136 -39.93097 -37.69544 -35.75827 -34.39051 -33.70768 -31.91099 -31.52376 -28.94889 -27.61723 -26.28928 -25.44600 -23.91812 -22.33893 -21.81137 -21.65774 -21.38871 -20.67405 -19.77130 -18.60157 -17.73371 -16.91847 -16.46841 -16.19228 -15.30975 -15.22104 -14.83281 -14.50926 -14.34650 -14.08131 -13.97773 -13.67799 -13.27115 -12.95007 -12.84574 -12.60627 -12.40948 -12.20676 -11.93114 -11.60769 -11.57952 -11.42960 -11.33709 -11.09493 -10.94738 -10.63903 -10.47353 -10.39922 -10.24436 -10.05377 -9.99731 -9.93234 -9.82528 -9.77272 -9.27724 -9.06588 -8.58625 -8.32112 -6.10013 -4.08449 1.98151 2.40100 3.15887 3.23918 3.34663 3.40554 3.43548 3.62995 3.83152 4.31152 4.40292 4.55010 4.60725 4.65021 4.76107 4.82222 4.87349 4.95881 4.99708 5.07199 5.11242 5.13297 5.22754 5.25080 5.35206 5.38369 5.48028 5.53791 5.57972 5.60996 5.65412 5.68775 5.72927 5.84222 5.93272 6.01896 6.04143 6.17497 6.21185 6.24686 6.28588 6.33836 6.52910 6.59871 6.85617 7.17838 7.30608 7.39728 7.70404 8.44864 8.93755 9.07651 9.52308 11.03073 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018447 B = 0.003908 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.494562 B = 7162.716168 C = 7722.661644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.073 3.927 3 Si 0.872 3.128 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.075 0.925 9 C -0.006 4.006 10 C -0.021 4.021 11 C 0.214 3.786 12 N -0.297 5.297 13 N -0.316 5.316 14 C 0.325 3.675 15 N -0.453 5.453 16 C 0.061 3.939 17 C -0.082 4.082 18 C -0.148 4.148 19 H 0.102 0.898 20 C -0.166 4.166 21 C -0.147 4.147 22 H 0.110 0.890 23 C 0.099 3.901 24 N -0.463 5.463 25 C 0.147 3.853 26 C -0.176 4.176 27 C -0.158 4.158 28 C -0.172 4.172 29 H 0.264 0.736 30 H 0.021 0.979 31 H 0.019 0.981 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.063 0.937 41 H 0.082 0.918 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.102 0.898 45 H 0.107 0.893 46 H 0.098 0.902 47 H 0.094 0.906 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.965 -5.026 -11.062 24.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.093 0.907 9 C -0.044 4.044 10 C -0.061 4.061 11 C -0.054 4.054 12 N -0.136 5.136 13 N -0.160 5.160 14 C -0.031 4.031 15 N -0.178 5.178 16 C -0.066 4.066 17 C -0.120 4.120 18 C -0.166 4.166 19 H 0.121 0.879 20 C -0.203 4.203 21 C -0.166 4.166 22 H 0.128 0.872 23 C -0.028 4.028 24 N -0.155 5.155 25 C 0.024 3.976 26 C -0.195 4.195 27 C -0.195 4.195 28 C -0.209 4.209 29 H 0.073 0.927 30 H 0.040 0.960 31 H 0.037 0.963 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.119 0.881 40 H 0.081 0.919 41 H 0.100 0.900 42 H 0.118 0.882 43 H 0.115 0.885 44 H 0.120 0.880 45 H 0.125 0.875 46 H 0.116 0.884 47 H 0.112 0.888 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 21.134 -5.136 -10.083 23.973 hybrid contribution 0.248 1.324 -0.652 1.496 sum 21.382 -3.812 -10.735 24.227 Atomic orbital electron populations 1.69897 1.06201 1.26917 1.50856 1.24916 0.94603 0.98851 0.94476 0.86898 0.80663 0.84052 0.78456 1.20301 1.21283 1.19019 1.20995 0.88787 0.94607 1.51227 0.90707 1.19596 0.97292 0.90309 0.97228 1.20221 0.80376 1.02066 1.03442 1.25616 0.97460 1.00904 0.81383 1.74052 0.95726 1.19808 1.24051 1.74508 1.13377 1.20447 1.07707 1.22178 0.85062 1.06775 0.89112 1.58800 1.01240 1.12670 1.45134 1.22263 0.98423 0.87289 0.98631 1.21157 0.94760 0.98131 0.97960 1.21984 0.99626 0.90549 1.04432 0.87940 1.22796 1.03171 0.98635 0.95678 1.21985 0.98566 1.03823 0.92210 0.87235 1.21334 0.88191 0.97511 0.95728 1.46275 1.05567 1.55172 1.08526 1.21382 1.02122 0.96345 0.77763 1.22499 1.01629 0.96782 0.98580 1.23131 0.91232 1.04162 1.00954 1.22960 1.04182 1.03203 0.90587 0.92659 0.96044 0.96262 0.88881 0.90815 0.90674 0.92794 0.90740 0.90621 0.89239 0.88121 0.91897 0.89977 0.88205 0.88520 0.87985 0.87467 0.88394 0.88773 0.88626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.88 13.96 55.43 0.77 -26.11 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.87 21.37 27.47 -169.99 -4.67 16.70 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 7 C -0.52 -13.97 9.66 -34.44 -0.33 -14.30 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.73 16 9 C -0.01 -0.13 4.02 -27.88 -0.11 -0.24 16 10 C -0.02 -0.41 5.53 -27.88 -0.15 -0.57 16 11 C 0.21 4.05 7.32 -154.02 -1.13 2.92 16 12 N -0.30 -6.21 12.18 32.99 0.40 -5.81 16 13 N -0.32 -6.05 11.58 30.31 0.35 -5.70 16 14 C 0.33 5.20 6.62 -318.88 -2.11 3.09 16 15 N -0.45 -5.62 4.46 -174.89 -0.78 -6.40 16 16 C 0.06 0.68 5.51 -3.68 -0.02 0.66 16 17 C -0.08 -0.69 6.07 -26.75 -0.16 -0.85 16 18 C -0.15 -1.17 6.22 -91.58 -0.57 -1.74 16 19 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 20 C -0.17 -1.31 9.63 -27.70 -0.27 -1.57 16 21 C -0.15 -1.27 6.15 -91.64 -0.56 -1.84 16 22 H 0.11 0.81 8.14 -51.92 -0.42 0.39 16 23 C 0.10 1.12 5.13 -4.30 -0.02 1.10 16 24 N -0.46 -7.36 2.81 -114.08 -0.32 -7.69 16 25 C 0.15 1.85 6.27 -4.04 -0.03 1.82 16 26 C -0.18 -2.25 5.83 -90.62 -0.53 -2.77 16 27 C -0.16 -2.20 8.66 -26.73 -0.23 -2.43 16 28 C -0.17 -1.81 10.25 -26.73 -0.27 -2.08 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.02 0.53 7.20 -51.93 -0.37 0.16 16 31 H 0.02 0.43 5.77 -51.93 -0.30 0.13 16 32 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 33 H 0.07 1.29 7.33 -51.93 -0.38 0.91 16 34 H 0.07 0.92 7.37 -51.93 -0.38 0.53 16 35 H 0.05 0.64 7.97 -51.93 -0.41 0.23 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.64 8.05 -51.92 -0.42 0.22 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.79 7.84 -51.93 -0.41 0.38 16 41 H 0.08 0.96 8.14 -51.94 -0.42 0.54 16 42 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.10 1.16 7.09 -51.93 -0.37 0.79 16 44 H 0.10 1.45 7.58 -51.93 -0.39 1.05 16 45 H 0.11 1.55 8.03 -51.93 -0.42 1.13 16 46 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 47 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 381.64 15.07 5.75 5.75 Total: -1.00 -31.43 381.64 -13.18 -44.61 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -8.09 Total: 1.50 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -6.60 Total: -16.85 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: 0.43 Total: -51.71 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.43 -13.18 -44.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521087327.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.105 kcal (2) G-P(sol) polarization free energy of solvation -31.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds