Wall clock time and date at job start Tue Mar 31 2020 11:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99780 * 2 1 4 4 H 1.48509 * 109.46947 * 269.99678 * 3 2 1 5 5 H 1.48496 * 109.47741 * 29.99575 * 3 2 1 6 6 H 1.48503 * 109.47294 * 150.00123 * 3 2 1 7 7 C 1.37870 * 119.99696 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00674 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99855 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47498 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47498 * 179.97438 * 10 9 7 12 12 N 1.30293 * 126.34735 * 90.02490 * 11 10 9 13 13 N 1.28533 * 110.05244 * 179.97438 * 12 11 10 14 14 C 1.31218 * 109.86004 * 359.97438 * 13 12 11 15 15 N 1.38576 * 126.47329 * 180.02562 * 14 13 12 16 16 C 1.47167 * 110.99732 * 273.96961 * 15 14 13 17 17 C 1.52995 * 108.58781 * 199.58820 * 16 15 14 18 18 C 1.52973 * 109.63774 * 305.87840 * 17 16 15 19 19 H 1.09004 * 115.39241 * 232.08342 * 18 17 16 20 20 C 1.51742 * 115.58716 * 89.40356 * 18 17 16 21 21 C 1.52360 * 60.15324 * 249.27956 * 20 18 17 22 22 H 1.09008 * 116.25676 * 253.57483 * 21 20 18 23 23 C 1.46742 * 110.99934 * 37.06825 * 15 14 13 24 24 N 1.36456 * 107.05200 * 359.76037 * 14 13 12 25 25 C 1.46498 * 127.13450 * 180.24636 * 24 14 13 26 26 C 1.53002 * 109.46897 * 266.69536 * 25 24 14 27 27 C 1.52997 * 117.49979 * 243.87518 * 26 25 24 28 28 C 1.53002 * 60.00290 * 252.51246 * 27 26 25 29 29 H 0.97004 * 120.00154 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47352 * 59.99698 * 9 7 2 31 31 H 1.09003 * 109.47188 * 300.00142 * 9 7 2 32 32 H 1.09003 * 109.46958 * 300.00211 * 10 9 7 33 33 H 1.09003 * 109.47124 * 59.99487 * 10 9 7 34 34 H 1.09001 * 109.62185 * 319.32022 * 16 15 14 35 35 H 1.09000 * 109.61713 * 79.86432 * 16 15 14 36 36 H 1.08998 * 109.44099 * 185.82256 * 17 16 15 37 37 H 1.09009 * 109.41274 * 65.91332 * 17 16 15 38 38 H 1.08998 * 117.67595 * 141.77786 * 20 18 17 39 39 H 1.09001 * 117.17315 * 356.99269 * 20 18 17 40 40 H 1.09005 * 109.29705 * 300.47254 * 23 15 14 41 41 H 1.08988 * 109.30113 * 60.06396 * 23 15 14 42 42 H 1.09006 * 109.47558 * 26.69377 * 25 24 14 43 43 H 1.09003 * 109.47631 * 146.69935 * 25 24 14 44 44 H 1.09000 * 115.55210 * 29.59105 * 26 25 24 45 45 H 1.08999 * 117.50440 * 0.02562 * 27 26 25 46 46 H 1.09003 * 117.49419 * 145.02303 * 27 26 25 47 47 H 1.09004 * 117.49599 * 252.51314 * 28 27 26 48 48 H 1.08999 * 117.49718 * 107.49346 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5285 -2.6366 0.0009 12 7 6.3008 -2.6371 1.0503 13 7 7.5345 -2.6375 0.6897 14 6 7.6160 -2.6378 -0.6200 15 7 8.7794 -2.6387 -1.3729 16 6 9.2748 -1.2684 -1.5798 17 6 10.2275 -1.2698 -2.7769 18 6 11.3220 -2.3166 -2.5616 19 1 12.3438 -1.9552 -2.6780 20 6 11.0070 -3.7093 -3.0751 21 6 11.0875 -3.4543 -1.5751 22 1 11.9709 -3.8412 -1.0669 23 6 9.8142 -3.4651 -0.7408 24 7 6.3389 -2.6430 -1.1004 25 6 5.9223 -2.6503 -2.5049 26 6 5.6942 -1.2128 -2.9766 27 6 4.2740 -0.8221 -3.3907 28 6 5.3597 -0.9988 -4.4543 29 1 -0.4850 0.8401 -0.0004 30 1 3.8745 -0.6800 0.8911 31 1 3.8752 -0.6804 -0.8888 32 1 3.6578 -3.1506 0.8907 33 1 3.6585 -3.1502 -0.8892 34 1 8.4357 -0.6023 -1.7806 35 1 9.8066 -0.9332 -0.6893 36 1 10.6825 -0.2847 -2.8795 37 1 9.6704 -1.5083 -3.6830 38 1 11.8177 -4.2750 -3.5341 39 1 10.0188 -3.8691 -3.5064 40 1 10.0312 -3.0730 0.2529 41 1 9.4532 -4.4897 -0.6529 42 1 6.7004 -3.1128 -3.1123 43 1 4.9969 -3.2172 -2.6066 44 1 6.3016 -0.4540 -2.4832 45 1 3.5021 -1.5890 -3.3268 46 1 3.9468 0.1938 -3.1695 47 1 5.7467 -0.0991 -4.9327 48 1 5.3021 -1.8821 -5.0903 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001521087327.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:53 Heat of formation + Delta-G solvation = 115.937442 kcal Electronic energy + Delta-G solvation = -27586.643995 eV Core-core repulsion = 24064.763112 eV Total energy + Delta-G solvation = -3521.880882 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.09347 -40.74999 -38.74234 -36.75917 -35.97461 -35.20685 -33.74699 -32.41509 -30.48623 -28.75999 -27.50892 -26.94268 -24.78761 -23.47099 -23.28662 -22.73890 -22.26506 -21.90965 -21.11777 -19.43993 -19.10445 -18.61394 -17.67529 -17.40421 -16.39283 -16.17954 -16.07717 -15.87141 -15.54600 -15.29135 -15.24085 -14.84123 -14.70970 -14.62130 -14.00149 -13.74789 -13.42962 -13.22175 -13.05097 -12.96912 -12.92698 -12.72940 -12.37390 -12.27932 -12.23885 -12.04314 -11.91774 -11.71585 -11.65123 -11.51156 -11.39152 -11.01663 -10.98720 -10.91552 -10.74735 -10.67157 -10.29977 -9.62513 -8.29735 -6.31817 0.65678 1.17806 1.27504 1.33603 1.43443 1.71185 2.32494 2.52863 2.82148 2.86115 3.06347 3.37599 3.55821 3.65164 3.72796 3.87478 3.89296 3.94955 3.98391 4.08448 4.10658 4.13318 4.26161 4.32552 4.33773 4.41430 4.49323 4.56627 4.62601 4.70184 4.80540 4.81694 4.82379 4.87172 4.91412 4.99515 5.05436 5.07273 5.16132 5.18116 5.25831 5.26667 5.29911 5.38835 5.44296 5.51800 5.63476 5.67225 6.17528 6.25812 6.74419 7.32172 7.66022 8.86448 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018447 B = 0.003908 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.494562 B = 7162.716168 C = 7722.661644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.258 1.258 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.518 4.518 8 H 0.048 0.952 9 C 0.005 3.995 10 C -0.010 4.010 11 C 0.203 3.797 12 N -0.332 5.332 13 N -0.350 5.350 14 C 0.344 3.656 15 N -0.442 5.442 16 C 0.060 3.940 17 C -0.075 4.075 18 C -0.144 4.144 19 H 0.121 0.879 20 C -0.157 4.157 21 C -0.156 4.156 22 H 0.124 0.876 23 C 0.100 3.900 24 N -0.457 5.457 25 C 0.143 3.857 26 C -0.179 4.179 27 C -0.188 4.188 28 C -0.132 4.132 29 H 0.266 0.734 30 H 0.000 1.000 31 H 0.031 0.969 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.044 0.956 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.045 0.955 41 H 0.074 0.926 42 H 0.126 0.874 43 H 0.104 0.896 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.074 0.926 47 H 0.109 0.891 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.876 -4.843 -13.859 28.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.177 4.177 3 Si 0.755 3.245 4 H -0.182 1.182 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.556 4.556 8 H 0.066 0.934 9 C -0.033 4.033 10 C -0.050 4.050 11 C -0.066 4.066 12 N -0.171 5.171 13 N -0.194 5.194 14 C -0.014 4.014 15 N -0.168 5.168 16 C -0.066 4.066 17 C -0.113 4.113 18 C -0.162 4.162 19 H 0.139 0.861 20 C -0.194 4.194 21 C -0.174 4.174 22 H 0.142 0.858 23 C -0.027 4.027 24 N -0.149 5.149 25 C 0.022 3.978 26 C -0.198 4.198 27 C -0.225 4.225 28 C -0.169 4.169 29 H 0.075 0.925 30 H 0.018 0.982 31 H 0.049 0.951 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.110 0.890 37 H 0.100 0.900 38 H 0.125 0.875 39 H 0.111 0.889 40 H 0.064 0.936 41 H 0.092 0.908 42 H 0.144 0.856 43 H 0.123 0.877 44 H 0.106 0.894 45 H 0.116 0.884 46 H 0.093 0.907 47 H 0.127 0.873 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 24.059 -4.957 -12.903 27.747 hybrid contribution -0.637 1.205 0.205 1.378 sum 23.423 -3.752 -12.698 26.906 Atomic orbital electron populations 1.70020 1.07801 1.27928 1.52602 1.25669 0.95272 1.02322 0.94390 0.85963 0.79082 0.80033 0.79405 1.18229 1.21086 1.19197 1.21242 0.90770 0.93529 1.50024 0.93420 1.19404 0.94645 0.92691 0.96569 1.19957 0.81171 0.99776 1.04081 1.25255 0.97056 1.02061 0.82232 1.73952 0.96736 1.20812 1.25614 1.74437 1.12770 1.22538 1.09647 1.22586 0.86230 1.03903 0.88645 1.59098 1.00403 1.13632 1.43690 1.22340 0.98571 0.86036 0.99697 1.21158 0.94269 0.99458 0.96418 1.22092 1.00354 0.90332 1.03462 0.86101 1.22824 1.03372 0.98687 0.94499 1.21948 0.97441 1.05360 0.92663 0.85769 1.21345 0.89092 0.96603 0.95682 1.46397 1.05074 1.54241 1.09198 1.21698 1.03405 0.96672 0.76043 1.22418 1.00317 0.96317 1.00779 1.23051 0.91979 1.02636 1.04813 1.23073 0.99881 1.04706 0.89227 0.92474 0.98156 0.95053 0.89712 0.88855 0.91731 0.93804 0.88957 0.90016 0.87542 0.88939 0.93634 0.90798 0.85622 0.87748 0.89403 0.88413 0.90694 0.87286 0.86085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.55 13.96 21.45 0.30 -57.25 16 2 C 0.02 1.21 5.47 84.65 0.46 1.68 16 3 Si 0.93 44.47 27.47 68.60 1.88 46.36 16 4 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.27 -12.77 6.54 99.48 0.65 -12.12 16 7 C -0.52 -28.59 9.66 25.60 0.25 -28.34 16 8 H 0.05 2.83 7.99 -2.91 -0.02 2.81 16 9 C 0.01 0.26 4.02 29.85 0.12 0.38 16 10 C -0.01 -0.40 5.53 29.85 0.17 -0.23 16 11 C 0.20 7.73 7.32 137.64 1.01 8.74 16 12 N -0.33 -14.17 12.18 -49.54 -0.60 -14.78 16 13 N -0.35 -13.59 11.58 -58.01 -0.67 -14.27 16 14 C 0.34 10.80 6.62 260.11 1.72 12.52 16 15 N -0.44 -10.33 4.46 -707.22 -3.15 -13.49 16 16 C 0.06 1.25 5.51 86.25 0.47 1.72 16 17 C -0.08 -1.01 6.07 30.58 0.19 -0.83 16 18 C -0.14 -1.76 6.22 -11.41 -0.07 -1.83 16 19 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 20 C -0.16 -1.91 9.63 29.97 0.29 -1.63 16 21 C -0.16 -2.29 6.15 -11.46 -0.07 -2.36 16 22 H 0.12 1.49 8.14 -2.38 -0.02 1.47 16 23 C 0.10 2.15 5.13 86.08 0.44 2.59 16 24 N -0.46 -14.16 2.81 -514.84 -1.45 -15.61 16 25 C 0.14 3.29 6.27 86.38 0.54 3.83 16 26 C -0.18 -4.22 5.83 -10.79 -0.06 -4.28 16 27 C -0.19 -5.00 8.66 30.59 0.27 -4.74 16 28 C -0.13 -2.32 10.25 30.60 0.31 -2.01 16 29 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 30 H 0.00 0.00 7.20 -2.39 -0.02 -0.01 16 31 H 0.03 1.39 5.77 -2.39 -0.01 1.38 16 32 H 0.08 3.45 8.14 -2.39 -0.02 3.44 16 33 H 0.09 3.26 7.33 -2.39 -0.02 3.24 16 34 H 0.06 1.48 7.37 -2.39 -0.02 1.46 16 35 H 0.04 1.00 7.97 -2.39 -0.02 0.98 16 36 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 1.05 8.05 -2.38 -0.02 1.03 16 38 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.05 1.14 7.84 -2.38 -0.02 1.12 16 41 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.13 2.26 8.14 -2.38 -0.02 2.25 16 43 H 0.10 2.27 7.09 -2.39 -0.02 2.26 16 44 H 0.09 2.36 7.58 -2.39 -0.02 2.34 16 45 H 0.10 2.76 8.03 -2.39 -0.02 2.74 16 46 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 47 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 48 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -70.24 381.64 3.22 -67.02 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.88 Total: 16.82 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: 6.03 Total: -14.81 kcal Atomic # 7 Polarization: -109.81 SS G_CDS: -5.57 Total: -115.39 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.88 Total: 46.36 kcal Total: -70.24 3.22 -67.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521087327.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.955 kcal (2) G-P(sol) polarization free energy of solvation -70.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds