Wall clock time and date at job start Tue Mar 31 2020 11:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.29824 * 118.55345 * 2 1 4 4 C 1.50140 * 123.28622 * 180.39763 * 3 2 1 5 5 N 1.46844 * 110.27224 * 342.92510 * 4 3 2 6 6 C 1.38577 * 110.99933 * 174.31828 * 5 4 3 7 7 N 1.31223 * 126.47191 * 295.61563 * 6 5 4 8 8 N 1.28521 * 109.85843 * 180.26153 * 7 6 5 9 9 C 1.30296 * 110.05720 * 0.02562 * 8 7 6 10 10 C 1.50702 * 126.34660 * 179.97438 * 9 8 7 11 11 C 1.53003 * 109.47052 * 270.02246 * 10 9 8 12 12 C 1.50702 * 109.47052 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00025 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00232 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99842 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 120.00059 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47009 * 60.00069 * 16 14 12 18 18 H 1.48501 * 109.46663 * 179.97438 * 16 14 12 19 19 H 1.48490 * 109.46847 * 299.99770 * 16 14 12 20 20 N 1.36453 * 126.47582 * 115.92873 * 6 5 4 21 21 C 1.46502 * 127.13710 * 359.70613 * 20 6 5 22 22 C 1.52999 * 109.47457 * 84.85891 * 21 20 6 23 23 C 1.52995 * 117.50016 * 243.62375 * 22 21 20 24 24 C 1.52998 * 60.00104 * 252.51149 * 23 22 21 25 25 C 1.47239 * 110.20698 * 50.92547 * 5 4 3 26 26 C 1.50306 * 118.55121 * 180.02562 * 2 1 3 27 27 H 1.08993 * 109.47097 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.46801 * 120.00147 * 1 2 3 29 29 H 1.08995 * 109.46906 * 240.00040 * 1 2 3 30 30 H 1.07997 * 118.35463 * 0.36977 * 3 2 1 31 31 H 1.08999 * 109.33489 * 222.67748 * 4 3 2 32 32 H 1.08991 * 109.20651 * 103.08593 * 4 3 2 33 33 H 1.08991 * 109.47250 * 30.02766 * 10 9 8 34 34 H 1.09001 * 109.46649 * 150.02666 * 10 9 8 35 35 H 1.08999 * 109.47241 * 300.00242 * 11 10 9 36 36 H 1.09001 * 109.47050 * 60.00665 * 11 10 9 37 37 H 0.96999 * 120.00075 * 179.97438 * 15 14 12 38 38 H 1.08996 * 109.47078 * 204.86611 * 21 20 6 39 39 H 1.09011 * 109.46662 * 324.86392 * 21 20 6 40 40 H 1.09002 * 115.54497 * 29.33240 * 22 21 20 41 41 H 1.08995 * 117.50252 * 0.02562 * 23 22 21 42 42 H 1.09002 * 117.49521 * 145.02074 * 23 22 21 43 43 H 1.09001 * 117.49930 * 252.51290 * 24 23 22 44 44 H 1.09003 * 117.49785 * 107.48994 * 24 23 22 45 45 H 1.08998 * 109.63599 * 50.89069 * 25 5 4 46 46 H 1.09007 * 109.63311 * 171.50012 * 25 5 4 47 47 H 1.09002 * 109.43190 * 283.57114 * 26 2 1 48 48 H 1.09000 * 109.43404 * 43.42770 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1276 1.1403 0.0000 4 6 3.6239 1.2642 -0.0087 5 7 4.2420 -0.0074 0.3878 6 6 5.6209 0.0505 0.2629 7 7 6.2976 0.2011 -0.8512 8 7 7.5579 0.2060 -0.5993 9 6 7.7585 0.0595 0.6797 10 6 9.0949 0.0133 1.3747 11 6 9.5864 -1.4342 1.4393 12 6 10.9225 -1.4805 2.1348 13 1 11.3756 -0.5688 2.4951 14 6 11.5665 -2.6868 2.3111 15 7 11.0146 -3.7971 1.8728 16 14 13.2224 -2.7442 3.1739 17 1 13.0816 -2.2080 4.5515 18 1 13.6994 -4.1491 3.2364 19 1 14.2020 -1.9214 2.4201 20 7 6.5317 -0.0442 1.2746 21 6 6.2530 -0.2204 2.7020 22 6 6.0678 -1.7084 3.0057 23 6 4.6951 -2.1617 3.5069 24 6 5.8832 -2.1130 4.4697 25 6 3.6859 -1.1135 -0.4093 26 6 2.2254 -1.3203 -0.0006 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3633 -0.5139 -0.8900 29 1 -0.3633 -0.5138 0.8900 30 1 1.5380 2.0451 0.0061 31 1 3.9254 2.0453 0.6893 32 1 3.9558 1.5294 -1.0124 33 1 9.8137 0.6167 0.8205 34 1 8.9924 0.4076 2.3857 35 1 8.8675 -2.0376 1.9935 36 1 9.6888 -1.8286 0.4283 37 1 11.4678 -4.6457 1.9965 38 1 7.0872 0.1686 3.2858 39 1 5.3431 0.3199 2.9638 40 1 6.6193 -2.3921 2.3603 41 1 3.9238 -1.3999 3.6198 42 1 4.3432 -3.1438 3.1911 43 1 6.3129 -3.0630 4.7873 44 1 5.8936 -1.3190 5.2164 45 1 3.7372 -0.8633 -1.4689 46 1 4.2528 -2.0245 -0.2171 47 1 2.1869 -1.7545 0.9984 48 1 1.7431 -1.9953 -0.7075 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527826689.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:26 Heat of formation + Delta-G solvation = 114.181523 kcal Electronic energy + Delta-G solvation = -27064.881196 eV Core-core repulsion = 23542.924172 eV Total energy + Delta-G solvation = -3521.957025 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.60652 -39.25684 -37.58865 -35.07276 -34.35622 -33.56928 -31.68860 -31.10100 -29.29390 -27.74039 -27.17217 -25.20195 -23.97664 -23.26313 -22.33917 -21.86788 -21.31854 -20.62174 -19.63697 -17.79009 -17.29310 -16.51021 -16.17337 -15.99491 -15.11214 -14.91508 -14.82928 -14.48816 -14.18149 -14.04916 -13.80014 -13.62438 -13.38462 -13.02234 -12.79515 -12.71354 -12.30865 -12.12402 -12.03432 -11.80448 -11.47448 -11.42615 -11.27588 -11.12324 -10.97884 -10.77583 -10.71455 -10.48316 -10.34939 -10.00684 -9.89472 -9.83699 -9.65703 -9.23169 -9.07077 -8.67089 -8.41013 -8.39031 -6.04856 -4.08686 1.97574 2.10002 2.52667 3.26977 3.30895 3.35859 3.38174 3.69458 3.91196 4.41301 4.45680 4.57721 4.69634 4.82445 4.95495 4.98162 5.04580 5.10443 5.14676 5.18035 5.31165 5.31612 5.33230 5.34854 5.38997 5.48141 5.55569 5.58214 5.61262 5.67172 5.69290 5.70269 5.83070 5.93950 5.95198 6.17461 6.22550 6.31746 6.38499 6.43259 6.47721 6.61465 6.69607 6.77880 6.99445 7.51045 7.57357 7.69940 7.92465 8.30232 8.96851 9.17544 9.55641 11.06190 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.020063 B = 0.003316 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.299096 B = 8441.150666 C = 9132.698803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.117 4.117 3 C -0.160 4.160 4 C 0.095 3.905 5 N -0.451 5.451 6 C 0.322 3.678 7 N -0.314 5.314 8 N -0.299 5.299 9 C 0.217 3.783 10 C -0.032 4.032 11 C 0.033 3.967 12 C -0.523 4.523 13 H 0.058 0.942 14 C 0.060 3.940 15 N -0.892 5.892 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.275 1.275 20 N -0.459 5.459 21 C 0.149 3.851 22 C -0.165 4.165 23 C -0.170 4.170 24 C -0.167 4.167 25 C 0.068 3.932 26 C -0.077 4.077 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.114 0.886 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.017 0.983 36 H 0.024 0.976 37 H 0.262 0.738 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.114 0.886 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.054 0.946 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.121 6.860 2.211 22.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.117 4.117 3 C -0.179 4.179 4 C -0.032 4.032 5 N -0.176 5.176 6 C -0.035 4.035 7 N -0.158 5.158 8 N -0.138 5.138 9 C -0.050 4.050 10 C -0.072 4.072 11 C -0.005 4.005 12 C -0.562 4.562 13 H 0.076 0.924 14 C -0.141 4.141 15 N -0.531 5.531 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.201 1.201 20 N -0.152 5.152 21 C 0.026 3.974 22 C -0.184 4.184 23 C -0.207 4.207 24 C -0.204 4.204 25 C -0.060 4.060 26 C -0.115 4.115 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.132 0.868 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.035 0.965 36 H 0.042 0.958 37 H 0.071 0.929 38 H 0.117 0.883 39 H 0.111 0.889 40 H 0.132 0.868 41 H 0.113 0.887 42 H 0.110 0.890 43 H 0.117 0.883 44 H 0.113 0.887 45 H 0.073 0.927 46 H 0.099 0.901 47 H 0.101 0.899 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -20.935 6.781 1.235 22.040 hybrid contribution 0.772 -0.252 1.093 1.361 sum -20.163 6.529 2.328 21.321 Atomic orbital electron populations 1.20906 0.92257 1.02265 1.02065 1.20972 0.95590 0.94972 1.00202 1.22014 0.94570 0.97751 1.03537 1.20960 0.91786 0.89938 1.00542 1.58980 0.97104 1.05577 1.55958 1.22100 0.89535 1.06976 0.84868 1.74484 0.99485 1.19757 1.22084 1.74052 1.07851 1.20140 1.11787 1.25648 0.88558 1.00216 0.90545 1.20466 0.85640 1.03543 0.97547 1.19065 0.95934 0.87475 0.98001 1.21092 1.04011 0.93240 1.37829 0.92411 1.24988 0.97809 0.95685 0.95654 1.69957 1.38740 0.98159 1.46210 0.86637 0.84167 0.77013 0.80080 1.20218 1.21305 1.20098 1.46299 1.06311 1.53879 1.08666 1.21336 1.03055 0.95702 0.77281 1.22523 1.01157 0.95938 0.98785 1.22988 0.91214 1.02717 1.03737 1.22927 1.02115 1.03435 0.91965 1.22183 0.94840 0.93221 0.95723 1.20494 0.93247 0.95065 1.02674 0.92160 0.91711 0.91636 0.86811 0.89894 0.91904 0.89328 0.91235 0.96467 0.95789 0.92857 0.88290 0.88896 0.86819 0.88679 0.89048 0.88289 0.88696 0.92738 0.90114 0.89916 0.90242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 10.02 36.01 0.36 -0.43 16 2 C -0.12 -1.05 5.89 -100.92 -0.59 -1.64 16 3 C -0.16 -1.53 9.53 -35.97 -0.34 -1.87 16 4 C 0.09 1.11 5.59 -5.28 -0.03 1.09 16 5 N -0.45 -6.05 4.74 -175.94 -0.83 -6.88 16 6 C 0.32 5.46 6.41 -318.87 -2.05 3.41 16 7 N -0.31 -6.30 12.09 30.31 0.37 -5.93 16 8 N -0.30 -6.53 12.18 32.99 0.40 -6.13 16 9 C 0.22 4.35 7.32 -154.02 -1.13 3.22 16 10 C -0.03 -0.66 5.52 -27.88 -0.15 -0.81 16 11 C 0.03 0.84 4.96 -27.88 -0.14 0.71 16 12 C -0.52 -14.24 9.11 -34.44 -0.31 -14.55 16 13 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 16 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 20 N -0.46 -7.83 2.81 -114.08 -0.32 -8.15 16 21 C 0.15 2.06 6.35 -4.04 -0.03 2.03 16 22 C -0.17 -2.33 6.01 -90.62 -0.54 -2.87 16 23 C -0.17 -1.91 10.18 -26.73 -0.27 -2.19 16 24 C -0.17 -1.99 10.25 -26.73 -0.27 -2.26 16 25 C 0.07 0.84 5.48 -3.61 -0.02 0.82 16 26 C -0.08 -0.72 6.05 -28.04 -0.17 -0.89 16 27 H 0.06 0.37 7.62 -51.93 -0.40 -0.03 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.11 0.89 7.63 -52.49 -0.40 0.49 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.82 8.03 -51.93 -0.42 0.41 16 33 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 34 H 0.07 1.27 7.18 -51.93 -0.37 0.90 16 35 H 0.02 0.45 7.79 -51.93 -0.40 0.05 16 36 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.10 1.31 7.11 -51.93 -0.37 0.94 16 39 H 0.09 1.10 7.88 -51.92 -0.41 0.69 16 40 H 0.11 2.03 7.79 -51.93 -0.40 1.62 16 41 H 0.09 0.97 8.03 -51.93 -0.42 0.55 16 42 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.05 0.72 8.08 -51.93 -0.42 0.30 16 46 H 0.08 1.10 8.04 -51.93 -0.42 0.68 16 47 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 392.72 15.07 5.92 5.92 Total: -1.00 -31.68 392.72 -12.74 -44.41 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -8.20 Total: 0.86 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -5.79 Total: -14.65 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: 0.35 Total: -52.69 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.68 -12.74 -44.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527826689.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.595 kcal (2) G-P(sol) polarization free energy of solvation -31.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds