Wall clock time and date at job start Tue Mar 31 2020 11:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.29824 * 118.55345 * 2 1 4 4 C 1.50140 * 123.28622 * 180.39763 * 3 2 1 5 5 N 1.46844 * 110.27224 * 342.92510 * 4 3 2 6 6 C 1.38577 * 110.99933 * 174.31828 * 5 4 3 7 7 N 1.31223 * 126.47191 * 295.61563 * 6 5 4 8 8 N 1.28521 * 109.85843 * 180.26153 * 7 6 5 9 9 C 1.30296 * 110.05720 * 0.02562 * 8 7 6 10 10 C 1.50702 * 126.34660 * 179.97438 * 9 8 7 11 11 C 1.53003 * 109.47052 * 270.02246 * 10 9 8 12 12 C 1.50702 * 109.47052 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00025 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00232 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99842 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 120.00059 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47009 * 60.00069 * 16 14 12 18 18 H 1.48501 * 109.46663 * 179.97438 * 16 14 12 19 19 H 1.48490 * 109.46847 * 299.99770 * 16 14 12 20 20 N 1.36453 * 126.47582 * 115.92873 * 6 5 4 21 21 C 1.46502 * 127.13710 * 359.70613 * 20 6 5 22 22 C 1.52999 * 109.47457 * 84.85891 * 21 20 6 23 23 C 1.52995 * 117.50016 * 243.62375 * 22 21 20 24 24 C 1.52998 * 60.00104 * 252.51149 * 23 22 21 25 25 C 1.47239 * 110.20698 * 50.92547 * 5 4 3 26 26 C 1.50306 * 118.55121 * 180.02562 * 2 1 3 27 27 H 1.08993 * 109.47097 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.46801 * 120.00147 * 1 2 3 29 29 H 1.08995 * 109.46906 * 240.00040 * 1 2 3 30 30 H 1.07997 * 118.35463 * 0.36977 * 3 2 1 31 31 H 1.08999 * 109.33489 * 222.67748 * 4 3 2 32 32 H 1.08991 * 109.20651 * 103.08593 * 4 3 2 33 33 H 1.08991 * 109.47250 * 30.02766 * 10 9 8 34 34 H 1.09001 * 109.46649 * 150.02666 * 10 9 8 35 35 H 1.08999 * 109.47241 * 300.00242 * 11 10 9 36 36 H 1.09001 * 109.47050 * 60.00665 * 11 10 9 37 37 H 0.96999 * 120.00075 * 179.97438 * 15 14 12 38 38 H 1.08996 * 109.47078 * 204.86611 * 21 20 6 39 39 H 1.09011 * 109.46662 * 324.86392 * 21 20 6 40 40 H 1.09002 * 115.54497 * 29.33240 * 22 21 20 41 41 H 1.08995 * 117.50252 * 0.02562 * 23 22 21 42 42 H 1.09002 * 117.49521 * 145.02074 * 23 22 21 43 43 H 1.09001 * 117.49930 * 252.51290 * 24 23 22 44 44 H 1.09003 * 117.49785 * 107.48994 * 24 23 22 45 45 H 1.08998 * 109.63599 * 50.89069 * 25 5 4 46 46 H 1.09007 * 109.63311 * 171.50012 * 25 5 4 47 47 H 1.09002 * 109.43190 * 283.57114 * 26 2 1 48 48 H 1.09000 * 109.43404 * 43.42770 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1276 1.1403 0.0000 4 6 3.6239 1.2642 -0.0087 5 7 4.2420 -0.0074 0.3878 6 6 5.6209 0.0505 0.2629 7 7 6.2976 0.2011 -0.8512 8 7 7.5579 0.2060 -0.5993 9 6 7.7585 0.0595 0.6797 10 6 9.0949 0.0133 1.3747 11 6 9.5864 -1.4342 1.4393 12 6 10.9225 -1.4805 2.1348 13 1 11.3756 -0.5688 2.4951 14 6 11.5665 -2.6868 2.3111 15 7 11.0146 -3.7971 1.8728 16 14 13.2224 -2.7442 3.1739 17 1 13.0816 -2.2080 4.5515 18 1 13.6994 -4.1491 3.2364 19 1 14.2020 -1.9214 2.4201 20 7 6.5317 -0.0442 1.2746 21 6 6.2530 -0.2204 2.7020 22 6 6.0678 -1.7084 3.0057 23 6 4.6951 -2.1617 3.5069 24 6 5.8832 -2.1130 4.4697 25 6 3.6859 -1.1135 -0.4093 26 6 2.2254 -1.3203 -0.0006 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3633 -0.5139 -0.8900 29 1 -0.3633 -0.5138 0.8900 30 1 1.5380 2.0451 0.0061 31 1 3.9254 2.0453 0.6893 32 1 3.9558 1.5294 -1.0124 33 1 9.8137 0.6167 0.8205 34 1 8.9924 0.4076 2.3857 35 1 8.8675 -2.0376 1.9935 36 1 9.6888 -1.8286 0.4283 37 1 11.4678 -4.6457 1.9965 38 1 7.0872 0.1686 3.2858 39 1 5.3431 0.3199 2.9638 40 1 6.6193 -2.3921 2.3603 41 1 3.9238 -1.3999 3.6198 42 1 4.3432 -3.1438 3.1911 43 1 6.3129 -3.0630 4.7873 44 1 5.8936 -1.3190 5.2164 45 1 3.7372 -0.8633 -1.4689 46 1 4.2528 -2.0245 -0.2171 47 1 2.1869 -1.7545 0.9984 48 1 1.7431 -1.9953 -0.7075 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001527826689.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:25 Heat of formation + Delta-G solvation = 99.342085 kcal Electronic energy + Delta-G solvation = -27065.524683 eV Core-core repulsion = 23542.924172 eV Total energy + Delta-G solvation = -3522.600511 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.06963 -40.22104 -38.67729 -36.33524 -35.78996 -35.14726 -33.52443 -31.98690 -30.62717 -29.00762 -28.28749 -27.07196 -24.82348 -24.27220 -23.79175 -23.24093 -22.56919 -21.91313 -21.07955 -18.91188 -18.48314 -18.31723 -17.51066 -17.21934 -16.51652 -16.20109 -15.89384 -15.84196 -15.39648 -15.16760 -14.91181 -14.71918 -14.54844 -14.28712 -14.12829 -13.96887 -13.59075 -13.28331 -13.00083 -12.85867 -12.80330 -12.79687 -12.70181 -12.52156 -12.36489 -12.11623 -12.09641 -11.80953 -11.61834 -11.58418 -11.55503 -11.31688 -10.98021 -10.95325 -10.56008 -10.06769 -9.98777 -9.59280 -8.19974 -6.32244 0.64899 1.18678 1.31964 1.42556 1.45853 1.53210 1.71891 2.41801 2.57884 2.87299 3.14321 3.42613 3.59631 3.68768 3.72707 3.80978 3.96653 3.99242 4.10029 4.14256 4.15976 4.23130 4.28872 4.33710 4.51201 4.54231 4.60780 4.65999 4.73665 4.76936 4.78388 4.82075 4.89252 4.91223 4.95802 4.99392 5.05104 5.10450 5.17379 5.21820 5.26213 5.44542 5.45892 5.58969 5.59423 5.73642 5.78280 6.04541 6.15735 6.22399 6.83057 7.37561 7.65537 8.91892 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.020063 B = 0.003316 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.299096 B = 8441.150666 C = 9132.698803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.113 4.113 3 C -0.170 4.170 4 C 0.094 3.906 5 N -0.441 5.441 6 C 0.341 3.659 7 N -0.349 5.349 8 N -0.334 5.334 9 C 0.203 3.797 10 C -0.016 4.016 11 C 0.047 3.953 12 C -0.539 4.539 13 H 0.072 0.928 14 C 0.002 3.998 15 N -0.934 5.934 16 Si 0.966 3.034 17 H -0.260 1.260 18 H -0.288 1.288 19 H -0.268 1.268 20 N -0.455 5.455 21 C 0.148 3.852 22 C -0.191 4.191 23 C -0.145 4.145 24 C -0.158 4.158 25 C 0.066 3.934 26 C -0.071 4.071 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.136 0.864 31 H 0.088 0.912 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.096 0.904 35 H -0.003 1.003 36 H -0.022 1.022 37 H 0.263 0.737 38 H 0.105 0.895 39 H 0.122 0.878 40 H 0.064 0.936 41 H 0.118 0.882 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.119 0.881 45 H 0.041 0.959 46 H 0.061 0.939 47 H 0.091 0.909 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.135 8.053 4.443 24.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.113 4.113 3 C -0.188 4.188 4 C -0.032 4.032 5 N -0.168 5.168 6 C -0.016 4.016 7 N -0.192 5.192 8 N -0.174 5.174 9 C -0.066 4.066 10 C -0.056 4.056 11 C 0.009 3.991 12 C -0.576 4.576 13 H 0.090 0.910 14 C -0.196 4.196 15 N -0.574 5.574 16 Si 0.791 3.209 17 H -0.185 1.185 18 H -0.213 1.213 19 H -0.193 1.193 20 N -0.146 5.146 21 C 0.027 3.973 22 C -0.210 4.210 23 C -0.182 4.182 24 C -0.195 4.195 25 C -0.061 4.061 26 C -0.109 4.109 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.153 0.847 31 H 0.106 0.894 32 H 0.062 0.938 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.015 0.985 36 H -0.003 1.003 37 H 0.071 0.929 38 H 0.123 0.877 39 H 0.140 0.860 40 H 0.083 0.917 41 H 0.136 0.864 42 H 0.110 0.890 43 H 0.107 0.893 44 H 0.138 0.862 45 H 0.059 0.941 46 H 0.080 0.920 47 H 0.110 0.890 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -22.963 7.991 3.479 24.562 hybrid contribution 1.305 -0.692 0.355 1.519 sum -21.659 7.299 3.835 23.175 Atomic orbital electron populations 1.20915 0.90132 1.03224 1.02894 1.21183 0.97041 0.94232 0.98887 1.22029 0.92852 0.99061 1.04880 1.21020 0.93580 0.88978 0.99638 1.59299 0.94793 1.06825 1.55853 1.22525 0.90949 1.04024 0.84142 1.74400 0.99118 1.21890 1.23809 1.73938 1.09143 1.21250 1.13049 1.25401 0.89390 1.01344 0.90421 1.20179 0.86031 1.00201 0.99205 1.18797 0.95435 0.90162 0.94718 1.21547 1.04650 0.93885 1.37564 0.90965 1.25971 1.01983 0.95236 0.96369 1.70120 1.40666 0.98858 1.47735 0.85480 0.78995 0.77007 0.79465 1.18472 1.21338 1.19272 1.46439 1.05285 1.52894 1.09985 1.21624 1.04617 0.95795 0.75272 1.22311 1.03569 0.95233 0.99927 1.23059 0.90382 1.03201 1.01580 1.23025 1.01842 1.03629 0.91028 1.22228 0.96902 0.91976 0.94977 1.20503 0.90693 0.96078 1.03584 0.91226 0.90919 0.90652 0.84679 0.89361 0.93786 0.89276 0.88542 0.98482 1.00341 0.92873 0.87669 0.86029 0.91721 0.86391 0.88974 0.89289 0.86229 0.94074 0.91988 0.89037 0.88408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 10.02 71.24 0.71 -0.41 16 2 C -0.11 -1.70 5.89 -15.40 -0.09 -1.79 16 3 C -0.17 -2.83 9.53 26.68 0.25 -2.57 16 4 C 0.09 2.13 5.59 85.39 0.48 2.61 16 5 N -0.44 -11.61 4.74 -710.54 -3.37 -14.97 16 6 C 0.34 11.81 6.41 260.11 1.67 13.47 16 7 N -0.35 -14.63 12.09 -58.00 -0.70 -15.33 16 8 N -0.33 -15.37 12.18 -49.54 -0.60 -15.97 16 9 C 0.20 8.45 7.32 137.64 1.01 9.46 16 10 C -0.02 -0.69 5.52 29.85 0.16 -0.53 16 11 C 0.05 2.50 4.96 29.85 0.15 2.65 16 12 C -0.54 -29.77 9.11 25.60 0.23 -29.54 16 13 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 14 C 0.00 0.14 5.46 84.65 0.46 0.60 16 15 N -0.93 -56.99 13.29 21.44 0.28 -56.71 16 16 Si 0.97 43.46 29.54 68.60 2.03 45.49 16 17 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 18 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 20 N -0.45 -15.75 2.81 -514.84 -1.45 -17.19 16 21 C 0.15 3.95 6.35 86.38 0.55 4.49 16 22 C -0.19 -5.40 6.01 -10.80 -0.06 -5.47 16 23 C -0.15 -3.00 10.18 30.59 0.31 -2.69 16 24 C -0.16 -3.52 10.25 30.59 0.31 -3.21 16 25 C 0.07 1.64 5.48 86.26 0.47 2.11 16 26 C -0.07 -1.17 6.05 29.74 0.18 -0.99 16 27 H 0.07 0.58 7.62 -2.39 -0.02 0.56 16 28 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.14 1.69 7.63 -2.91 -0.02 1.67 16 31 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.04 1.17 8.03 -2.39 -0.02 1.15 16 33 H 0.09 3.70 8.14 -2.39 -0.02 3.68 16 34 H 0.10 3.48 7.18 -2.39 -0.02 3.46 16 35 H 0.00 -0.18 7.79 -2.39 -0.02 -0.20 16 36 H -0.02 -1.34 8.14 -2.39 -0.02 -1.36 16 37 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 38 H 0.11 2.65 7.11 -2.39 -0.02 2.63 16 39 H 0.12 2.53 7.88 -2.38 -0.02 2.51 16 40 H 0.06 2.49 7.79 -2.39 -0.02 2.47 16 41 H 0.12 1.94 8.03 -2.39 -0.02 1.92 16 42 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.04 1.12 8.08 -2.39 -0.02 1.10 16 46 H 0.06 1.74 8.04 -2.38 -0.02 1.72 16 47 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -72.57 392.72 3.92 -68.65 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.93 Total: 17.84 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: 6.80 Total: -11.80 kcal Atomic # 7 Polarization: -114.35 SS G_CDS: -5.83 Total: -120.18 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -72.57 3.92 -68.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527826689.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.994 kcal (2) G-P(sol) polarization free energy of solvation -72.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds