Wall clock time and date at job start Tue Mar 31 2020 11:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47061 * 2 1 4 4 N 1.46495 * 109.47327 * 119.99881 * 2 1 3 5 5 N 1.40295 * 126.09324 * 299.97649 * 4 2 1 6 6 C 1.31071 * 108.26979 * 179.97438 * 5 4 2 7 7 C 1.39296 * 108.07925 * 0.02562 * 6 5 4 8 8 C 1.34329 * 126.09038 * 119.99464 * 4 2 1 9 9 C 1.50825 * 128.03605 * 0.12979 * 8 4 2 10 10 H 1.09000 * 109.70934 * 283.11834 * 9 8 4 11 11 N 1.46899 * 109.68140 * 43.64739 * 9 8 4 12 12 C 1.46895 * 110.99973 * 203.92494 * 11 9 8 13 13 C 1.52998 * 109.47209 * 180.02562 * 12 11 9 14 14 H 1.09001 * 109.47284 * 305.00264 * 13 12 11 15 15 C 1.47204 * 109.47047 * 65.00295 * 13 12 11 16 16 N 6.09145 * 151.76704 * 255.81372 * 2 1 3 17 17 C 1.53007 * 109.47385 * 185.00264 * 13 12 11 18 18 C 1.50697 * 109.46894 * 175.00224 * 17 13 12 19 19 H 1.08002 * 120.00599 * 0.02562 * 18 17 13 20 20 C 1.37880 * 119.99675 * 179.97438 * 18 17 13 21 21 N 1.31517 * 120.00210 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00019 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46845 * 269.99914 * 22 20 18 24 24 H 1.48503 * 109.47399 * 29.99403 * 22 20 18 25 25 H 1.48498 * 109.47295 * 150.00010 * 22 20 18 26 26 C 1.53357 * 108.38226 * 163.37331 * 9 8 4 27 27 C 1.53105 * 109.51311 * 49.94732 * 26 9 8 28 28 C 1.50842 * 127.90011 * 180.02562 * 7 6 5 29 29 H 1.09000 * 109.47622 * 60.00169 * 1 2 3 30 30 H 1.09004 * 109.47093 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47453 * 299.99844 * 1 2 3 32 32 H 1.08997 * 109.46999 * 240.00317 * 2 1 3 33 33 H 1.09004 * 109.47308 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.47396 * 299.99707 * 3 2 1 35 35 H 1.08996 * 109.47675 * 60.00105 * 3 2 1 36 36 H 1.08007 * 125.95930 * 179.97438 * 6 5 4 37 37 H 1.00903 * 110.99961 * 79.97291 * 11 9 8 38 38 H 1.08998 * 109.47088 * 60.00601 * 12 11 9 39 39 H 1.08999 * 109.47502 * 300.00466 * 12 11 9 40 40 H 1.08995 * 109.46729 * 55.00217 * 17 13 12 41 41 H 1.09007 * 109.46460 * 295.00072 * 17 13 12 42 42 H 0.96998 * 119.99640 * 180.02562 * 21 20 18 43 43 H 1.09006 * 109.46195 * 169.95717 * 26 9 8 44 44 H 1.09002 * 109.46710 * 289.93324 * 26 9 8 45 45 H 1.09004 * 109.46554 * 49.73899 * 27 26 9 46 46 H 1.08997 * 109.47019 * 169.72573 * 27 26 9 47 47 H 1.09000 * 109.68145 * 43.69374 * 28 7 6 48 48 H 1.09003 * 109.68079 * 283.13638 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 7 1.7598 -0.3241 2.5255 6 6 2.3643 -1.1802 3.3127 7 6 3.0228 -2.1119 2.5135 8 6 2.7937 -1.7873 1.2155 9 6 3.3422 -2.5585 0.0411 10 1 2.5554 -3.1752 -0.3935 11 7 3.8528 -1.6232 -0.9701 12 6 3.8633 -2.2422 -2.3022 13 6 4.4006 -1.2403 -3.3260 14 1 3.8149 -0.3222 -3.2779 15 6 5.8099 -0.9395 -3.0253 16 7 6.8967 -0.7062 -2.7937 17 6 4.2954 -1.8395 -4.7299 18 6 4.7092 -0.8086 -5.7483 19 1 5.0170 0.1753 -5.4265 20 6 4.6959 -1.1220 -7.0909 21 7 5.0566 -0.2223 -7.9798 22 14 4.1643 -2.8241 -7.6476 23 1 5.3485 -3.7184 -7.7047 24 1 3.1753 -3.3732 -6.6855 25 1 3.5468 -2.7338 -8.9950 26 6 4.4834 -3.4531 0.5404 27 6 4.0152 -4.2433 1.7653 28 6 3.8541 -3.2899 2.9569 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 2.3544 -1.1652 4.3926 37 1 4.7707 -1.2866 -0.7205 38 1 2.8490 -2.5330 -2.5757 39 1 4.5028 -3.1247 -2.2877 40 1 3.2659 -2.1439 -4.9187 41 1 4.9506 -2.7074 -4.8045 42 1 5.0469 -0.4427 -8.9244 43 1 4.7739 -4.1459 -0.2495 44 1 5.3380 -2.8337 0.8126 45 1 3.0593 -4.7194 1.5469 46 1 4.7539 -5.0068 2.0092 47 1 3.3511 -3.8076 3.7736 48 1 4.8333 -2.9442 3.2883 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647230950.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:43 Heat of formation + Delta-G solvation = 80.297195 kcal Electronic energy + Delta-G solvation = -26989.081826 eV Core-core repulsion = 23465.655467 eV Total energy + Delta-G solvation = -3523.426359 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.61411 -38.16201 -36.74617 -35.78044 -34.47076 -33.48235 -31.99451 -30.55653 -29.39293 -28.36204 -27.28984 -26.46807 -23.48718 -22.94686 -22.52821 -22.05489 -21.50054 -19.60145 -18.91516 -17.24139 -16.96720 -16.71210 -15.74943 -15.43224 -14.75492 -14.68049 -14.45503 -14.22013 -14.10956 -13.88816 -13.58251 -13.30538 -13.20283 -13.06295 -12.86289 -12.59194 -12.48051 -12.30125 -12.24455 -12.01846 -11.97051 -11.60216 -11.51219 -11.36298 -11.29059 -11.15310 -11.07397 -10.95933 -10.80231 -10.40107 -10.35460 -10.06020 -9.86207 -9.40461 -9.22635 -8.67633 -8.60434 -8.19113 -6.16242 -4.17529 1.90987 2.55732 2.78721 3.21851 3.28789 3.30420 3.44067 3.48544 3.94710 4.32585 4.37590 4.49919 4.58557 4.60990 4.77299 4.93930 4.94776 4.96449 5.13318 5.16773 5.18395 5.25047 5.28864 5.41952 5.44579 5.52990 5.54035 5.60479 5.66167 5.68439 5.73317 5.80560 5.84926 5.88789 5.96643 6.04063 6.10071 6.14358 6.20933 6.21547 6.23721 6.72288 6.77069 6.86067 7.02757 7.11887 7.16613 7.56738 7.81718 8.25421 8.35758 8.86929 9.43228 10.96783 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.015425 B = 0.003530 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.768742 B = 7930.848697 C = 8674.219110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.152 3.848 3 C -0.155 4.155 4 N -0.334 5.334 5 N -0.301 5.301 6 C 0.044 3.956 7 C -0.250 4.250 8 C 0.103 3.897 9 C 0.150 3.850 10 H 0.098 0.902 11 N -0.688 5.688 12 C 0.062 3.938 13 C 0.018 3.982 14 H 0.116 0.884 15 C 0.235 3.765 16 N -0.464 5.464 17 C -0.003 4.003 18 C -0.530 4.530 19 H 0.074 0.926 20 C 0.072 3.928 21 N -0.896 5.896 22 Si 0.877 3.123 23 H -0.277 1.277 24 H -0.263 1.263 25 H -0.286 1.286 26 C -0.142 4.142 27 C -0.114 4.114 28 C -0.037 4.037 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.129 0.871 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.175 0.825 37 H 0.347 0.653 38 H 0.093 0.907 39 H 0.042 0.958 40 H 0.039 0.961 41 H 0.019 0.981 42 H 0.265 0.735 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.832 -6.956 20.273 23.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.050 3.950 3 C -0.213 4.213 4 N -0.115 5.115 5 N -0.123 5.123 6 C -0.140 4.140 7 C -0.262 4.262 8 C -0.028 4.028 9 C 0.038 3.962 10 H 0.116 0.884 11 N -0.319 5.319 12 C -0.068 4.068 13 C -0.004 4.004 14 H 0.133 0.867 15 C -0.082 4.082 16 N -0.141 5.141 17 C -0.042 4.042 18 C -0.567 4.567 19 H 0.092 0.908 20 C -0.131 4.131 21 N -0.534 5.534 22 Si 0.704 3.296 23 H -0.203 1.203 24 H -0.187 1.187 25 H -0.212 1.212 26 C -0.182 4.182 27 C -0.152 4.152 28 C -0.075 4.075 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.146 0.854 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.192 0.808 37 H 0.167 0.833 38 H 0.112 0.888 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.038 0.962 42 H 0.075 0.925 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.586 -5.090 20.120 22.460 hybrid contribution 0.683 -2.083 -0.469 2.241 sum -7.903 -7.173 19.651 22.362 Atomic orbital electron populations 1.22152 0.94209 1.02454 1.03101 1.21588 0.94406 0.94406 0.84558 1.22045 1.02102 0.94477 1.02665 1.48511 1.37301 1.20421 1.05255 1.77430 1.24614 1.23480 0.86777 1.23435 0.97427 0.93542 0.99646 1.19843 1.11043 1.03804 0.91548 1.20745 0.95797 0.90483 0.95799 1.20232 0.96794 0.90819 0.88361 0.88403 1.60651 1.32055 1.37297 1.01875 1.22203 1.02105 0.95636 0.86842 1.19061 0.83552 1.00815 0.96964 0.86660 1.29113 0.95101 0.92475 0.91496 1.81050 1.12600 1.09525 1.10902 1.19631 0.98191 0.97053 0.89365 1.21007 1.45878 0.99592 0.90252 0.90799 1.24992 0.94440 0.96936 0.96695 1.69903 1.47507 1.34254 1.01688 0.86823 0.79415 0.84932 0.78385 1.20300 1.18705 1.21218 1.22272 0.98171 0.99156 0.98606 1.21550 1.01511 0.97649 0.94527 1.19949 0.98051 0.92398 0.97150 0.90630 0.92523 0.91724 0.85386 0.91891 0.90737 0.92088 0.80777 0.83312 0.88845 0.93984 0.94274 0.96243 0.92510 0.90892 0.91212 0.91660 0.91548 0.91455 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.46 37.16 0.35 -1.22 16 2 C 0.15 1.65 3.44 -67.94 -0.23 1.42 16 3 C -0.16 -1.70 9.45 37.16 0.35 -1.34 16 4 N -0.33 -4.10 3.26 -50.69 -0.17 -4.27 16 5 N -0.30 -4.01 12.45 30.55 0.38 -3.63 16 6 C 0.04 0.50 12.00 -17.48 -0.21 0.29 16 7 C -0.25 -2.76 5.91 -105.05 -0.62 -3.39 16 8 C 0.10 1.19 6.41 -82.33 -0.53 0.66 16 9 C 0.15 1.48 2.53 -68.62 -0.17 1.31 16 10 H 0.10 0.90 7.82 -51.93 -0.41 0.49 16 11 N -0.69 -7.49 4.28 -107.70 -0.46 -7.95 16 12 C 0.06 0.72 4.93 -3.83 -0.02 0.70 16 13 C 0.02 0.29 2.42 -93.40 -0.23 0.06 16 14 H 0.12 1.77 8.14 -51.93 -0.42 1.35 16 15 C 0.24 4.39 12.97 -20.78 -0.27 4.12 16 16 N -0.46 -9.66 18.53 42.13 0.78 -8.87 16 17 C 0.00 -0.07 3.49 -27.88 -0.10 -0.17 16 18 C -0.53 -13.70 9.15 -34.44 -0.32 -14.02 16 19 H 0.07 2.12 7.84 -52.49 -0.41 1.70 16 20 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 21 N -0.90 -26.46 13.96 55.43 0.77 -25.69 16 22 Si 0.88 19.99 27.47 -169.99 -4.67 15.32 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 24 H -0.26 -5.47 6.54 56.52 0.37 -5.10 16 25 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 26 C -0.14 -1.28 5.19 -26.49 -0.14 -1.42 16 27 C -0.11 -0.90 5.90 -26.44 -0.16 -1.06 16 28 C -0.04 -0.32 6.28 -27.58 -0.17 -0.49 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.13 1.38 6.04 -51.93 -0.31 1.07 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.18 1.49 8.06 -52.48 -0.42 1.06 16 37 H 0.35 4.23 7.43 -39.29 -0.29 3.94 16 38 H 0.09 0.95 8.06 -51.93 -0.42 0.53 16 39 H 0.04 0.48 7.69 -51.93 -0.40 0.08 16 40 H 0.04 0.73 7.20 -51.93 -0.37 0.36 16 41 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.07 0.63 7.77 -51.93 -0.40 0.23 16 44 H 0.07 0.70 7.91 -51.93 -0.41 0.29 16 45 H 0.06 0.51 8.11 -51.93 -0.42 0.09 16 46 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 386.95 15.07 5.83 5.83 Total: -1.00 -31.07 386.95 -8.14 -39.22 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -8.06 Total: 2.72 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -2.56 Total: -12.68 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: 1.31 Total: -50.41 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.67 Total: 15.32 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.07 -8.14 -39.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647230950.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.515 kcal (2) G-P(sol) polarization free energy of solvation -31.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds