Wall clock time and date at job start Tue Mar 31 2020 11:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47061 * 2 1 4 4 N 1.46495 * 109.47327 * 119.99881 * 2 1 3 5 5 N 1.40295 * 126.09324 * 299.97649 * 4 2 1 6 6 C 1.31071 * 108.26979 * 179.97438 * 5 4 2 7 7 C 1.39296 * 108.07925 * 0.02562 * 6 5 4 8 8 C 1.34329 * 126.09038 * 119.99464 * 4 2 1 9 9 C 1.50825 * 128.03605 * 0.12979 * 8 4 2 10 10 H 1.09000 * 109.70934 * 283.11834 * 9 8 4 11 11 N 1.46899 * 109.68140 * 43.64739 * 9 8 4 12 12 C 1.46895 * 110.99973 * 203.92494 * 11 9 8 13 13 C 1.52998 * 109.47209 * 180.02562 * 12 11 9 14 14 H 1.09001 * 109.47284 * 305.00264 * 13 12 11 15 15 C 1.47204 * 109.47047 * 65.00295 * 13 12 11 16 16 N 6.09145 * 151.76704 * 255.81372 * 2 1 3 17 17 C 1.53007 * 109.47385 * 185.00264 * 13 12 11 18 18 C 1.50697 * 109.46894 * 175.00224 * 17 13 12 19 19 H 1.08002 * 120.00599 * 0.02562 * 18 17 13 20 20 C 1.37880 * 119.99675 * 179.97438 * 18 17 13 21 21 N 1.31517 * 120.00210 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00019 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46845 * 269.99914 * 22 20 18 24 24 H 1.48503 * 109.47399 * 29.99403 * 22 20 18 25 25 H 1.48498 * 109.47295 * 150.00010 * 22 20 18 26 26 C 1.53357 * 108.38226 * 163.37331 * 9 8 4 27 27 C 1.53105 * 109.51311 * 49.94732 * 26 9 8 28 28 C 1.50842 * 127.90011 * 180.02562 * 7 6 5 29 29 H 1.09000 * 109.47622 * 60.00169 * 1 2 3 30 30 H 1.09004 * 109.47093 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47453 * 299.99844 * 1 2 3 32 32 H 1.08997 * 109.46999 * 240.00317 * 2 1 3 33 33 H 1.09004 * 109.47308 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.47396 * 299.99707 * 3 2 1 35 35 H 1.08996 * 109.47675 * 60.00105 * 3 2 1 36 36 H 1.08007 * 125.95930 * 179.97438 * 6 5 4 37 37 H 1.00903 * 110.99961 * 79.97291 * 11 9 8 38 38 H 1.08998 * 109.47088 * 60.00601 * 12 11 9 39 39 H 1.08999 * 109.47502 * 300.00466 * 12 11 9 40 40 H 1.08995 * 109.46729 * 55.00217 * 17 13 12 41 41 H 1.09007 * 109.46460 * 295.00072 * 17 13 12 42 42 H 0.96998 * 119.99640 * 180.02562 * 21 20 18 43 43 H 1.09006 * 109.46195 * 169.95717 * 26 9 8 44 44 H 1.09002 * 109.46710 * 289.93324 * 26 9 8 45 45 H 1.09004 * 109.46554 * 49.73899 * 27 26 9 46 46 H 1.08997 * 109.47019 * 169.72573 * 27 26 9 47 47 H 1.09000 * 109.68145 * 43.69374 * 28 7 6 48 48 H 1.09003 * 109.68079 * 283.13638 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 7 1.7598 -0.3241 2.5255 6 6 2.3643 -1.1802 3.3127 7 6 3.0228 -2.1119 2.5135 8 6 2.7937 -1.7873 1.2155 9 6 3.3422 -2.5585 0.0411 10 1 2.5554 -3.1752 -0.3935 11 7 3.8528 -1.6232 -0.9701 12 6 3.8633 -2.2422 -2.3022 13 6 4.4006 -1.2403 -3.3260 14 1 3.8149 -0.3222 -3.2779 15 6 5.8099 -0.9395 -3.0253 16 7 6.8967 -0.7062 -2.7937 17 6 4.2954 -1.8395 -4.7299 18 6 4.7092 -0.8086 -5.7483 19 1 5.0170 0.1753 -5.4265 20 6 4.6959 -1.1220 -7.0909 21 7 5.0566 -0.2223 -7.9798 22 14 4.1643 -2.8241 -7.6476 23 1 5.3485 -3.7184 -7.7047 24 1 3.1753 -3.3732 -6.6855 25 1 3.5468 -2.7338 -8.9950 26 6 4.4834 -3.4531 0.5404 27 6 4.0152 -4.2433 1.7653 28 6 3.8541 -3.2899 2.9569 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 2.3544 -1.1652 4.3926 37 1 4.7707 -1.2866 -0.7205 38 1 2.8490 -2.5330 -2.5757 39 1 4.5028 -3.1247 -2.2877 40 1 3.2659 -2.1439 -4.9187 41 1 4.9506 -2.7074 -4.8045 42 1 5.0469 -0.4427 -8.9244 43 1 4.7739 -4.1459 -0.2495 44 1 5.3380 -2.8337 0.8126 45 1 3.0593 -4.7194 1.5469 46 1 4.7539 -5.0068 2.0092 47 1 3.3511 -3.8076 3.7736 48 1 4.8333 -2.9442 3.2883 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647230950.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:42 Heat of formation + Delta-G solvation = 62.303314 kcal Electronic energy + Delta-G solvation = -26989.862099 eV Core-core repulsion = 23465.655467 eV Total energy + Delta-G solvation = -3524.206632 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.43941 -39.20650 -37.81588 -36.74181 -35.74577 -34.91968 -33.50189 -31.57396 -30.19990 -29.45238 -28.11646 -27.76154 -24.58142 -23.77542 -23.48063 -23.09518 -22.77691 -20.42730 -19.72172 -18.91086 -18.29156 -17.85020 -16.76206 -16.40994 -16.05012 -15.54599 -15.46887 -15.27902 -15.01986 -14.91049 -14.62590 -14.54556 -14.24882 -14.10403 -14.08049 -13.82841 -13.70981 -13.34419 -13.20319 -13.08702 -13.05575 -12.73897 -12.68410 -12.53192 -12.30660 -12.17587 -12.00303 -11.88475 -11.75128 -11.69823 -11.66665 -11.34967 -11.26511 -11.17887 -10.71546 -10.10524 -9.44313 -9.01714 -8.22449 -6.28067 1.05440 1.45719 1.46447 1.57442 1.74199 1.94569 1.96960 1.98185 2.43034 3.04763 3.14066 3.25003 3.62225 3.71416 3.86655 4.08103 4.11561 4.14347 4.16713 4.27461 4.37379 4.40453 4.46593 4.54903 4.65425 4.71304 4.73558 4.78749 4.82145 4.88675 4.89674 4.93514 4.98890 5.04167 5.05566 5.19308 5.28690 5.29297 5.30533 5.37855 5.44483 5.47000 5.49188 5.66049 5.91052 5.95512 6.18532 6.28074 6.33967 6.76879 6.83193 6.95769 7.36587 8.94514 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.015425 B = 0.003530 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.768742 B = 7930.848697 C = 8674.219110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.148 3.852 3 C -0.149 4.149 4 N -0.341 5.341 5 N -0.335 5.335 6 C 0.035 3.965 7 C -0.258 4.258 8 C 0.091 3.909 9 C 0.155 3.845 10 H 0.114 0.886 11 N -0.689 5.689 12 C 0.074 3.926 13 C 0.025 3.975 14 H 0.121 0.879 15 C 0.247 3.753 16 N -0.509 5.509 17 C -0.002 4.002 18 C -0.529 4.529 19 H 0.027 0.973 20 C 0.002 3.998 21 N -0.956 5.956 22 Si 0.947 3.053 23 H -0.279 1.279 24 H -0.218 1.218 25 H -0.293 1.293 26 C -0.139 4.139 27 C -0.110 4.110 28 C -0.036 4.036 29 H 0.091 0.909 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.133 0.867 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.050 0.950 36 H 0.197 0.803 37 H 0.339 0.661 38 H 0.122 0.878 39 H 0.052 0.948 40 H 0.069 0.931 41 H 0.026 0.974 42 H 0.263 0.737 43 H 0.082 0.918 44 H 0.055 0.945 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.526 -10.042 21.250 25.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.047 3.953 3 C -0.207 4.207 4 N -0.122 5.122 5 N -0.157 5.157 6 C -0.148 4.148 7 C -0.270 4.270 8 C -0.040 4.040 9 C 0.044 3.956 10 H 0.132 0.868 11 N -0.319 5.319 12 C -0.056 4.056 13 C 0.003 3.997 14 H 0.138 0.862 15 C -0.069 4.069 16 N -0.186 5.186 17 C -0.041 4.041 18 C -0.567 4.567 19 H 0.045 0.955 20 C -0.195 4.195 21 N -0.597 5.597 22 Si 0.770 3.230 23 H -0.204 1.204 24 H -0.140 1.140 25 H -0.219 1.219 26 C -0.179 4.179 27 C -0.148 4.148 28 C -0.074 4.074 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.151 0.849 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.069 0.931 36 H 0.213 0.787 37 H 0.157 0.843 38 H 0.140 0.860 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.044 0.956 42 H 0.072 0.928 43 H 0.100 0.900 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.098 0.902 47 H 0.099 0.901 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.298 -8.186 21.142 24.900 hybrid contribution 1.258 -0.991 -0.711 1.752 sum -9.039 -9.176 20.431 24.152 Atomic orbital electron populations 1.22094 0.93280 1.02538 1.03273 1.21685 0.95148 0.93995 0.84425 1.21991 1.00883 0.95049 1.02815 1.48639 1.37642 1.20799 1.05156 1.77379 1.25989 1.24717 0.87592 1.23906 0.96917 0.93223 1.00766 1.20210 1.10967 1.04393 0.91431 1.21133 0.95680 0.90464 0.96714 1.20286 0.97346 0.90456 0.87552 0.86822 1.60589 1.31517 1.37826 1.01945 1.22120 1.03515 0.94146 0.85790 1.19134 0.81979 1.02170 0.96437 0.86180 1.29767 0.95599 0.91239 0.90274 1.81052 1.14121 1.11026 1.12426 1.19590 0.99544 0.95412 0.89562 1.21417 1.44359 0.99202 0.91750 0.95462 1.26052 0.94832 1.01640 0.96952 1.70097 1.50331 1.37223 1.02048 0.85722 0.79809 0.79099 0.78401 1.20436 1.13970 1.21933 1.22244 0.97252 0.98985 0.99418 1.21535 1.02169 0.97515 0.93576 1.20005 0.97656 0.91790 0.97949 0.89009 0.92417 0.92962 0.84915 0.93594 0.89400 0.93093 0.78673 0.84287 0.86009 0.92988 0.91312 0.95587 0.92778 0.89983 0.92636 0.91086 0.90208 0.90108 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.46 71.98 0.68 -2.08 16 2 C 0.15 3.05 3.44 44.99 0.15 3.20 16 3 C -0.15 -3.22 9.45 71.98 0.68 -2.54 16 4 N -0.34 -8.03 3.26 -314.30 -1.03 -9.05 16 5 N -0.33 -8.74 12.45 -57.27 -0.71 -9.45 16 6 C 0.04 0.78 12.00 85.06 1.02 1.80 16 7 C -0.26 -5.28 5.91 -20.14 -0.12 -5.40 16 8 C 0.09 1.94 6.41 41.64 0.27 2.21 16 9 C 0.15 2.62 2.53 44.33 0.11 2.73 16 10 H 0.11 1.61 7.82 -2.39 -0.02 1.59 16 11 N -0.69 -13.31 4.28 -494.64 -2.12 -15.43 16 12 C 0.07 1.44 4.93 86.30 0.43 1.86 16 13 C 0.02 0.73 2.42 -12.60 -0.03 0.70 16 14 H 0.12 3.48 8.14 -2.39 -0.02 3.46 16 15 C 0.25 9.08 12.97 89.45 1.16 10.24 16 16 N -0.51 -21.33 18.53 20.00 0.37 -20.96 16 17 C 0.00 -0.08 3.49 29.85 0.10 0.03 16 18 C -0.53 -27.36 9.15 25.60 0.23 -27.13 16 19 H 0.03 1.61 7.84 -2.91 -0.02 1.59 16 20 C 0.00 0.09 5.47 84.65 0.46 0.55 16 21 N -0.96 -58.22 13.96 21.45 0.30 -57.92 16 22 Si 0.95 39.84 27.47 68.60 1.88 41.73 16 23 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 24 H -0.22 -7.54 6.54 99.48 0.65 -6.89 16 25 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 26 C -0.14 -2.13 5.19 30.75 0.16 -1.97 16 27 C -0.11 -1.40 5.90 30.78 0.18 -1.22 16 28 C -0.04 -0.53 6.28 30.04 0.19 -0.34 16 29 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.13 2.57 6.04 -2.39 -0.01 2.56 16 33 H 0.04 1.12 8.14 -2.38 -0.02 1.11 16 34 H 0.09 1.60 8.14 -2.38 -0.02 1.59 16 35 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.20 3.10 8.06 -2.91 -0.02 3.07 16 37 H 0.34 7.76 7.43 -89.69 -0.67 7.10 16 38 H 0.12 1.78 8.06 -2.39 -0.02 1.76 16 39 H 0.05 0.95 7.69 -2.39 -0.02 0.94 16 40 H 0.07 2.21 7.20 -2.39 -0.02 2.19 16 41 H 0.03 0.95 7.57 -2.38 -0.02 0.93 16 42 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 43 H 0.08 1.12 7.77 -2.38 -0.02 1.10 16 44 H 0.05 1.02 7.91 -2.39 -0.02 1.00 16 45 H 0.07 0.85 8.11 -2.38 -0.02 0.83 16 46 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -70.47 386.95 4.61 -65.87 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: 0.22 Total: 22.56 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: 5.68 Total: -17.35 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -3.19 Total: -112.80 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 1.88 Total: 41.73 kcal Total: -70.47 4.61 -65.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647230950.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.169 kcal (2) G-P(sol) polarization free energy of solvation -70.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds