Wall clock time and date at job start Tue Mar 31 2020 11:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47073 * 2 1 4 4 N 1.46496 * 109.47102 * 239.99685 * 2 1 3 5 5 N 1.40304 * 126.08950 * 53.79146 * 4 2 1 6 6 C 1.31068 * 108.26648 * 179.97438 * 5 4 2 7 7 C 1.39299 * 108.08257 * 0.37480 * 6 5 4 8 8 C 1.34319 * 126.09341 * 234.09753 * 4 2 1 9 9 C 1.50825 * 128.03317 * 359.79861 * 8 4 2 10 10 H 1.08997 * 109.68244 * 76.90508 * 9 8 4 11 11 N 1.46898 * 109.68360 * 316.34813 * 9 8 4 12 12 C 1.46903 * 110.99729 * 139.62970 * 11 9 8 13 13 C 1.53007 * 109.46872 * 180.02562 * 12 11 9 14 14 H 1.09010 * 109.47054 * 305.00399 * 13 12 11 15 15 C 1.47201 * 109.47076 * 64.99888 * 13 12 11 16 16 N 3.54729 * 112.52467 * 63.99964 * 2 1 3 17 17 C 1.52999 * 109.47094 * 185.00169 * 13 12 11 18 18 C 1.50697 * 109.47180 * 174.99790 * 17 13 12 19 19 H 1.08005 * 120.00175 * 359.97438 * 18 17 13 20 20 C 1.37875 * 120.00245 * 179.97438 * 18 17 13 21 21 N 1.31514 * 119.99856 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00199 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46873 * 90.00211 * 22 20 18 24 24 H 1.48501 * 109.47299 * 210.00379 * 22 20 18 25 25 H 1.48498 * 109.47127 * 330.00727 * 22 20 18 26 26 C 1.53357 * 108.38903 * 196.60941 * 9 8 4 27 27 C 1.53112 * 109.51820 * 310.09372 * 26 9 8 28 28 C 1.50839 * 127.89905 * 179.65770 * 7 6 5 29 29 H 1.09002 * 109.47212 * 60.00384 * 1 2 3 30 30 H 1.08996 * 109.47267 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47439 * 300.00113 * 1 2 3 32 32 H 1.09002 * 109.47212 * 119.99616 * 2 1 3 33 33 H 1.09000 * 109.47080 * 59.99667 * 3 2 1 34 34 H 1.08998 * 109.46585 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.46788 * 299.99875 * 3 2 1 36 36 H 1.08005 * 125.95778 * 180.13504 * 6 5 4 37 37 H 1.00899 * 110.99694 * 15.67748 * 11 9 8 38 38 H 1.08997 * 109.47582 * 300.00072 * 12 11 9 39 39 H 1.08996 * 109.46967 * 60.00827 * 12 11 9 40 40 H 1.08997 * 109.46858 * 294.99768 * 17 13 12 41 41 H 1.09003 * 109.47050 * 55.00243 * 17 13 12 42 42 H 0.96998 * 119.99739 * 179.97438 * 21 20 18 43 43 H 1.09004 * 109.46939 * 190.07761 * 26 9 8 44 44 H 1.09006 * 109.45035 * 70.09833 * 26 9 8 45 45 H 1.08994 * 109.46426 * 310.25693 * 27 26 9 46 46 H 1.09007 * 109.45758 * 190.27609 * 27 26 9 47 47 H 1.08996 * 109.67987 * 316.34596 * 28 7 6 48 48 H 1.09000 * 109.68507 * 76.87066 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 -1.1961 5 7 1.6623 -0.3997 -2.5217 6 6 2.3021 -1.2284 -3.3102 7 6 3.0737 -2.0729 -2.5153 8 6 2.8821 -1.7190 -1.2188 9 6 3.5499 -2.3977 -0.0491 10 1 2.8399 -3.0612 0.4446 11 7 4.0274 -1.3862 0.9032 12 6 3.7892 -1.8134 2.2884 13 6 4.2979 -0.7365 3.2489 14 1 5.3450 -0.5230 3.0337 15 6 3.5019 0.4898 3.0772 16 7 2.8889 1.4364 2.9451 17 6 4.1644 -1.2337 4.6896 18 6 4.7773 -0.2260 5.6277 19 1 5.2184 0.6785 5.2354 20 6 4.7750 -0.4586 6.9867 21 7 4.2384 -1.5602 7.4643 22 14 5.5353 0.7901 8.1493 23 1 4.5017 1.7713 8.5667 24 1 6.0672 0.0917 9.3471 25 1 6.6415 1.5003 7.4585 26 6 4.7374 -3.2126 -0.5760 27 6 4.2798 -4.0835 -1.7492 28 6 3.9774 -3.1953 -2.9612 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 2.2388 -1.2547 -4.3881 37 1 3.6006 -0.4898 0.7228 38 1 2.7208 -1.9631 2.4440 39 1 4.3182 -2.7476 2.4765 40 1 3.1099 -1.3625 4.9332 41 1 4.6807 -2.1881 4.7939 42 1 4.2371 -1.7241 8.4203 43 1 5.1229 -3.8494 0.2203 44 1 5.5225 -2.5348 -0.9113 45 1 3.3791 -4.6287 -1.4671 46 1 5.0680 -4.7917 -2.0048 47 1 3.4803 -3.7820 -3.7337 48 1 4.9073 -2.7840 -3.3540 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647230951.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:45 Heat of formation + Delta-G solvation = 84.369177 kcal Electronic energy + Delta-G solvation = -27271.489012 eV Core-core repulsion = 23748.239227 eV Total energy + Delta-G solvation = -3523.249785 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.79154 -37.97621 -36.87463 -35.88659 -34.52509 -33.45026 -31.91396 -30.49272 -29.45525 -28.22882 -27.43082 -26.18545 -23.47334 -23.08988 -22.52571 -21.87165 -21.79607 -19.79890 -18.94701 -17.20582 -16.72634 -16.53702 -15.84938 -15.48196 -14.82403 -14.75633 -14.47712 -14.40034 -14.20586 -13.75012 -13.59518 -13.26617 -13.14518 -12.97994 -12.86061 -12.65042 -12.40023 -12.26625 -12.15081 -12.00970 -11.74264 -11.54636 -11.48387 -11.33271 -11.14352 -11.06222 -10.97162 -10.77565 -10.70272 -10.53644 -10.45851 -10.33085 -9.63661 -9.42746 -9.29819 -8.61819 -8.50632 -8.19140 -6.15012 -4.18460 1.78764 2.34474 2.73055 3.26065 3.33065 3.36149 3.41063 3.48087 4.01757 4.24719 4.28385 4.37220 4.65060 4.70916 4.74398 4.80495 4.85528 4.97151 5.04923 5.16199 5.23217 5.24889 5.38843 5.44217 5.45296 5.50623 5.53938 5.57870 5.63520 5.71674 5.74840 5.84057 5.93111 5.96748 6.00769 6.05075 6.12324 6.19240 6.24278 6.31478 6.43290 6.64511 6.88588 6.97243 7.18808 7.35936 7.44147 7.67682 7.79586 8.16372 8.25285 8.85831 9.47474 10.95785 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.017779 B = 0.003481 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.535992 B = 8042.746834 C = 9118.425628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.147 3.853 3 C -0.163 4.163 4 N -0.354 5.354 5 N -0.293 5.293 6 C 0.046 3.954 7 C -0.233 4.233 8 C 0.075 3.925 9 C 0.150 3.850 10 H 0.072 0.928 11 N -0.692 5.692 12 C 0.062 3.938 13 C 0.005 3.995 14 H 0.113 0.887 15 C 0.235 3.765 16 N -0.468 5.468 17 C 0.034 3.966 18 C -0.527 4.527 19 H 0.057 0.943 20 C 0.063 3.937 21 N -0.891 5.891 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.285 1.285 25 H -0.272 1.272 26 C -0.099 4.099 27 C -0.120 4.120 28 C -0.038 4.038 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.180 0.820 37 H 0.341 0.659 38 H 0.035 0.965 39 H 0.099 0.901 40 H 0.024 0.976 41 H 0.041 0.959 42 H 0.263 0.737 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.068 0.932 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.311 -5.555 -19.480 20.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.046 3.954 3 C -0.220 4.220 4 N -0.136 5.136 5 N -0.114 5.114 6 C -0.138 4.138 7 C -0.245 4.245 8 C -0.054 4.054 9 C 0.039 3.961 10 H 0.090 0.910 11 N -0.326 5.326 12 C -0.068 4.068 13 C -0.017 4.017 14 H 0.131 0.869 15 C -0.082 4.082 16 N -0.145 5.145 17 C -0.005 4.005 18 C -0.565 4.565 19 H 0.075 0.925 20 C -0.139 4.139 21 N -0.529 5.529 22 Si 0.719 3.281 23 H -0.207 1.207 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.138 4.138 27 C -0.158 4.158 28 C -0.076 4.076 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.197 0.803 37 H 0.163 0.837 38 H 0.053 0.947 39 H 0.117 0.883 40 H 0.043 0.957 41 H 0.059 0.941 42 H 0.073 0.927 43 H 0.093 0.907 44 H 0.096 0.904 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.086 0.914 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.517 -3.358 -19.317 19.920 hybrid contribution 0.184 -0.113 0.951 0.975 sum -3.333 -3.471 -18.366 18.986 Atomic orbital electron populations 1.22074 0.92806 1.02882 1.03721 1.21484 0.96321 0.94417 0.83188 1.22231 1.01780 0.94000 1.04026 1.48589 1.33798 1.25375 1.05831 1.77442 1.23757 1.23863 0.86337 1.23540 0.96277 0.94220 0.99787 1.19873 1.08381 1.05050 0.91212 1.21193 0.94855 0.91970 0.97399 1.20379 0.95101 0.92598 0.87992 0.91020 1.60759 1.63780 1.05159 1.02929 1.22286 0.99319 0.99367 0.85779 1.19366 0.97720 0.84987 0.99672 0.86909 1.29332 0.93083 0.94523 0.91231 1.80965 1.11205 1.11386 1.10959 1.19162 0.98495 0.97479 0.85370 1.21119 1.38632 1.05347 0.91449 0.92495 1.24942 0.95183 0.95399 0.98357 1.69932 1.44530 1.24950 1.13522 0.86594 0.79627 0.81375 0.80510 1.20686 1.21045 1.19695 1.21573 0.96807 0.97850 0.97591 1.21614 1.01408 0.97782 0.95013 1.19960 0.97244 0.93184 0.97259 0.90829 0.92194 0.90383 0.88704 0.89254 0.92149 0.91266 0.80325 0.83717 0.94662 0.88282 0.95737 0.94090 0.92750 0.90651 0.90449 0.91972 0.91167 0.91387 0.91367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.36 37.16 0.35 -1.52 16 2 C 0.15 1.95 2.67 -67.93 -0.18 1.77 16 3 C -0.16 -2.21 8.72 37.16 0.32 -1.89 16 4 N -0.35 -4.85 3.25 -50.69 -0.16 -5.01 16 5 N -0.29 -4.10 12.41 30.55 0.38 -3.72 16 6 C 0.05 0.55 12.00 -17.48 -0.21 0.34 16 7 C -0.23 -2.73 5.91 -105.05 -0.62 -3.35 16 8 C 0.08 0.97 6.24 -82.33 -0.51 0.46 16 9 C 0.15 1.78 2.65 -68.62 -0.18 1.60 16 10 H 0.07 0.82 7.63 -51.93 -0.40 0.43 16 11 N -0.69 -9.20 6.03 -107.69 -0.65 -9.85 16 12 C 0.06 0.87 4.47 -3.82 -0.02 0.85 16 13 C 0.00 0.08 2.42 -93.40 -0.23 -0.15 16 14 H 0.11 1.92 8.14 -51.92 -0.42 1.49 16 15 C 0.23 4.43 12.95 -20.78 -0.27 4.16 16 16 N -0.47 -9.18 16.83 42.13 0.71 -8.47 16 17 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 18 C -0.53 -13.62 8.60 -34.44 -0.30 -13.92 16 19 H 0.06 1.47 7.59 -52.48 -0.40 1.07 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -24.92 13.29 55.43 0.74 -24.19 16 22 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 C -0.10 -0.99 5.52 -26.49 -0.15 -1.14 16 27 C -0.12 -1.00 5.89 -26.53 -0.16 -1.16 16 28 C -0.04 -0.34 6.28 -27.67 -0.17 -0.51 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.10 1.32 5.23 -51.93 -0.27 1.05 16 33 H 0.09 1.26 7.01 -51.93 -0.36 0.90 16 34 H 0.06 0.88 7.44 -51.93 -0.39 0.49 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.18 1.52 8.06 -52.48 -0.42 1.10 16 37 H 0.34 4.87 3.45 -39.29 -0.14 4.73 16 38 H 0.04 0.49 7.81 -51.93 -0.41 0.08 16 39 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.08 0.84 8.12 -51.93 -0.42 0.42 16 45 H 0.06 0.52 8.11 -51.93 -0.42 0.10 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 382.70 15.07 5.77 5.77 Total: -1.00 -29.25 382.70 -8.62 -37.87 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -7.83 Total: 3.91 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -2.54 Total: -12.22 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: 1.01 Total: -51.24 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.25 -8.62 -37.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647230951.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.238 kcal (2) G-P(sol) polarization free energy of solvation -29.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds