Wall clock time and date at job start Tue Mar 31 2020 11:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47073 * 2 1 4 4 N 1.46496 * 109.47102 * 239.99685 * 2 1 3 5 5 N 1.40304 * 126.08950 * 53.79146 * 4 2 1 6 6 C 1.31068 * 108.26648 * 179.97438 * 5 4 2 7 7 C 1.39299 * 108.08257 * 0.37480 * 6 5 4 8 8 C 1.34319 * 126.09341 * 234.09753 * 4 2 1 9 9 C 1.50825 * 128.03317 * 359.79861 * 8 4 2 10 10 H 1.08997 * 109.68244 * 76.90508 * 9 8 4 11 11 N 1.46898 * 109.68360 * 316.34813 * 9 8 4 12 12 C 1.46903 * 110.99729 * 139.62970 * 11 9 8 13 13 C 1.53007 * 109.46872 * 180.02562 * 12 11 9 14 14 H 1.09010 * 109.47054 * 305.00399 * 13 12 11 15 15 C 1.47201 * 109.47076 * 64.99888 * 13 12 11 16 16 N 3.54729 * 112.52467 * 63.99964 * 2 1 3 17 17 C 1.52999 * 109.47094 * 185.00169 * 13 12 11 18 18 C 1.50697 * 109.47180 * 174.99790 * 17 13 12 19 19 H 1.08005 * 120.00175 * 359.97438 * 18 17 13 20 20 C 1.37875 * 120.00245 * 179.97438 * 18 17 13 21 21 N 1.31514 * 119.99856 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00199 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46873 * 90.00211 * 22 20 18 24 24 H 1.48501 * 109.47299 * 210.00379 * 22 20 18 25 25 H 1.48498 * 109.47127 * 330.00727 * 22 20 18 26 26 C 1.53357 * 108.38903 * 196.60941 * 9 8 4 27 27 C 1.53112 * 109.51820 * 310.09372 * 26 9 8 28 28 C 1.50839 * 127.89905 * 179.65770 * 7 6 5 29 29 H 1.09002 * 109.47212 * 60.00384 * 1 2 3 30 30 H 1.08996 * 109.47267 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47439 * 300.00113 * 1 2 3 32 32 H 1.09002 * 109.47212 * 119.99616 * 2 1 3 33 33 H 1.09000 * 109.47080 * 59.99667 * 3 2 1 34 34 H 1.08998 * 109.46585 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.46788 * 299.99875 * 3 2 1 36 36 H 1.08005 * 125.95778 * 180.13504 * 6 5 4 37 37 H 1.00899 * 110.99694 * 15.67748 * 11 9 8 38 38 H 1.08997 * 109.47582 * 300.00072 * 12 11 9 39 39 H 1.08996 * 109.46967 * 60.00827 * 12 11 9 40 40 H 1.08997 * 109.46858 * 294.99768 * 17 13 12 41 41 H 1.09003 * 109.47050 * 55.00243 * 17 13 12 42 42 H 0.96998 * 119.99739 * 179.97438 * 21 20 18 43 43 H 1.09004 * 109.46939 * 190.07761 * 26 9 8 44 44 H 1.09006 * 109.45035 * 70.09833 * 26 9 8 45 45 H 1.08994 * 109.46426 * 310.25693 * 27 26 9 46 46 H 1.09007 * 109.45758 * 190.27609 * 27 26 9 47 47 H 1.08996 * 109.67987 * 316.34596 * 28 7 6 48 48 H 1.09000 * 109.68507 * 76.87066 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 -1.1961 5 7 1.6623 -0.3997 -2.5217 6 6 2.3021 -1.2284 -3.3102 7 6 3.0737 -2.0729 -2.5153 8 6 2.8821 -1.7190 -1.2188 9 6 3.5499 -2.3977 -0.0491 10 1 2.8399 -3.0612 0.4446 11 7 4.0274 -1.3862 0.9032 12 6 3.7892 -1.8134 2.2884 13 6 4.2979 -0.7365 3.2489 14 1 5.3450 -0.5230 3.0337 15 6 3.5019 0.4898 3.0772 16 7 2.8889 1.4364 2.9451 17 6 4.1644 -1.2337 4.6896 18 6 4.7773 -0.2260 5.6277 19 1 5.2184 0.6785 5.2354 20 6 4.7750 -0.4586 6.9867 21 7 4.2384 -1.5602 7.4643 22 14 5.5353 0.7901 8.1493 23 1 4.5017 1.7713 8.5667 24 1 6.0672 0.0917 9.3471 25 1 6.6415 1.5003 7.4585 26 6 4.7374 -3.2126 -0.5760 27 6 4.2798 -4.0835 -1.7492 28 6 3.9774 -3.1953 -2.9612 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 2.2388 -1.2547 -4.3881 37 1 3.6006 -0.4898 0.7228 38 1 2.7208 -1.9631 2.4440 39 1 4.3182 -2.7476 2.4765 40 1 3.1099 -1.3625 4.9332 41 1 4.6807 -2.1881 4.7939 42 1 4.2371 -1.7241 8.4203 43 1 5.1229 -3.8494 0.2203 44 1 5.5225 -2.5348 -0.9113 45 1 3.3791 -4.6287 -1.4671 46 1 5.0680 -4.7917 -2.0048 47 1 3.4803 -3.7820 -3.7337 48 1 4.9073 -2.7840 -3.3540 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647230951.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:45 Heat of formation + Delta-G solvation = 68.958493 kcal Electronic energy + Delta-G solvation = -27272.157269 eV Core-core repulsion = 23748.239227 eV Total energy + Delta-G solvation = -3523.918042 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.71338 -39.19522 -37.86474 -37.07179 -35.86864 -34.99817 -33.37942 -31.63571 -30.32019 -29.35396 -28.47826 -27.68793 -24.79118 -24.03705 -23.64373 -23.33750 -22.70775 -20.75391 -19.81554 -18.58579 -18.34616 -17.87826 -16.85160 -16.76681 -16.41472 -15.76435 -15.62875 -15.26451 -15.15262 -14.91859 -14.79631 -14.36391 -14.31323 -14.19417 -14.04885 -13.91785 -13.66279 -13.47426 -13.34164 -13.20322 -13.02022 -12.91717 -12.67692 -12.53012 -12.51858 -12.49796 -12.36896 -12.07061 -11.81547 -11.65877 -11.51938 -11.36489 -11.31984 -11.10268 -10.55520 -10.42242 -9.63264 -9.10802 -8.19791 -6.27497 0.83600 1.39384 1.39522 1.42166 1.50896 1.84768 1.89683 1.93793 2.41006 2.98013 3.15086 3.20668 3.27102 3.35952 3.70336 3.78897 3.88610 3.98040 4.12535 4.14922 4.25408 4.32939 4.36015 4.44261 4.45981 4.54348 4.56604 4.62950 4.67953 4.75739 4.81633 4.87508 4.90914 4.97390 4.99551 5.04563 5.15554 5.32089 5.32622 5.45952 5.47041 5.54203 5.61821 5.78321 5.79118 5.87431 6.02020 6.10139 6.20111 6.71429 6.74435 6.86654 7.41084 8.90981 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.017779 B = 0.003481 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.535992 B = 8042.746834 C = 9118.425628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.148 3.852 3 C -0.151 4.151 4 N -0.364 5.364 5 N -0.322 5.322 6 C 0.044 3.956 7 C -0.234 4.234 8 C 0.055 3.945 9 C 0.150 3.850 10 H 0.075 0.925 11 N -0.693 5.693 12 C 0.072 3.928 13 C 0.016 3.984 14 H 0.122 0.878 15 C 0.236 3.764 16 N -0.483 5.483 17 C 0.040 3.960 18 C -0.538 4.538 19 H 0.053 0.947 20 C 0.014 3.986 21 N -0.922 5.922 22 Si 0.945 3.055 23 H -0.284 1.284 24 H -0.279 1.279 25 H -0.265 1.265 26 C -0.096 4.096 27 C -0.115 4.115 28 C -0.037 4.037 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.069 0.931 36 H 0.209 0.791 37 H 0.334 0.666 38 H 0.035 0.965 39 H 0.117 0.883 40 H 0.002 0.998 41 H 0.038 0.962 42 H 0.264 0.736 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.062 0.938 46 H 0.091 0.909 47 H 0.086 0.914 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.532 -6.479 -20.869 21.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.047 3.953 3 C -0.209 4.209 4 N -0.147 5.147 5 N -0.144 5.144 6 C -0.140 4.140 7 C -0.246 4.246 8 C -0.073 4.073 9 C 0.039 3.961 10 H 0.093 0.907 11 N -0.326 5.326 12 C -0.057 4.057 13 C -0.006 4.006 14 H 0.139 0.861 15 C -0.080 4.080 16 N -0.160 5.160 17 C 0.002 3.998 18 C -0.576 4.576 19 H 0.071 0.929 20 C -0.185 4.185 21 N -0.562 5.562 22 Si 0.771 3.229 23 H -0.211 1.211 24 H -0.204 1.204 25 H -0.190 1.190 26 C -0.135 4.135 27 C -0.153 4.153 28 C -0.075 4.075 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.226 0.774 37 H 0.155 0.845 38 H 0.054 0.946 39 H 0.135 0.865 40 H 0.021 0.979 41 H 0.057 0.943 42 H 0.073 0.927 43 H 0.102 0.898 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.109 0.891 47 H 0.104 0.896 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.726 -4.287 -20.719 21.333 hybrid contribution -0.066 0.183 1.321 1.335 sum -2.791 -4.105 -19.398 20.023 Atomic orbital electron populations 1.22026 0.91999 1.03014 1.03869 1.21408 0.96949 0.93833 0.83153 1.22093 1.00735 0.94524 1.03546 1.48600 1.34414 1.25910 1.05728 1.77400 1.25045 1.25176 0.86730 1.24120 0.95377 0.93390 1.01110 1.20303 1.08156 1.05429 0.90662 1.21537 0.95165 0.92231 0.98401 1.20513 0.95971 0.92186 0.87414 0.90706 1.60793 1.63829 1.05350 1.02665 1.22164 0.99421 0.98559 0.85606 1.19225 0.98238 0.85269 0.97846 0.86067 1.29627 0.92871 0.94611 0.90878 1.80961 1.11740 1.11960 1.11333 1.18970 0.96563 0.96686 0.87611 1.21527 1.38038 1.05769 0.92250 0.92874 1.25661 0.95882 0.96960 1.00023 1.70019 1.45903 1.26432 1.13807 0.85744 0.78883 0.79329 0.78929 1.21057 1.20427 1.18967 1.21577 0.95630 0.97720 0.98555 1.21607 1.02089 0.97639 0.94012 1.20063 0.97049 0.92479 0.97897 0.91005 0.92031 0.89844 0.89497 0.90087 0.93482 0.91212 0.77406 0.84461 0.94643 0.86484 0.97920 0.94340 0.92723 0.89774 0.91357 0.91956 0.89070 0.89571 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.36 71.98 0.67 -2.91 16 2 C 0.15 3.94 2.67 44.99 0.12 4.06 16 3 C -0.15 -4.17 8.72 71.98 0.63 -3.55 16 4 N -0.36 -9.80 3.25 -314.28 -1.02 -10.82 16 5 N -0.32 -8.77 12.41 -57.27 -0.71 -9.48 16 6 C 0.04 0.97 12.00 85.06 1.02 1.99 16 7 C -0.23 -5.01 5.91 -20.14 -0.12 -5.13 16 8 C 0.06 1.37 6.24 41.64 0.26 1.63 16 9 C 0.15 3.33 2.65 44.33 0.12 3.45 16 10 H 0.08 1.61 7.63 -2.39 -0.02 1.59 16 11 N -0.69 -17.75 6.03 -494.62 -2.98 -20.73 16 12 C 0.07 1.94 4.47 86.30 0.39 2.33 16 13 C 0.02 0.55 2.42 -12.60 -0.03 0.52 16 14 H 0.12 4.00 8.14 -2.38 -0.02 3.98 16 15 C 0.24 8.90 12.95 89.45 1.16 10.06 16 16 N -0.48 -19.00 16.83 20.00 0.34 -18.67 16 17 C 0.04 1.79 4.42 29.85 0.13 1.93 16 18 C -0.54 -27.75 8.60 25.60 0.22 -27.53 16 19 H 0.05 2.73 7.59 -2.91 -0.02 2.70 16 20 C 0.01 0.75 5.46 84.65 0.46 1.21 16 21 N -0.92 -51.81 13.29 21.45 0.28 -51.53 16 22 Si 0.95 42.75 29.54 68.60 2.03 44.77 16 23 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 24 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 26 C -0.10 -1.70 5.52 30.75 0.17 -1.53 16 27 C -0.12 -1.58 5.89 30.73 0.18 -1.40 16 28 C -0.04 -0.54 6.28 29.99 0.19 -0.35 16 29 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.09 2.43 5.23 -2.39 -0.01 2.41 16 33 H 0.08 2.34 7.01 -2.39 -0.02 2.33 16 34 H 0.05 1.40 7.44 -2.39 -0.02 1.38 16 35 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.21 3.00 8.06 -2.91 -0.02 2.98 16 37 H 0.33 9.43 3.45 -89.69 -0.31 9.12 16 38 H 0.04 0.96 7.81 -2.39 -0.02 0.94 16 39 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 40 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 41 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 43 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.07 1.34 8.12 -2.38 -0.02 1.32 16 45 H 0.06 0.87 8.11 -2.39 -0.02 0.85 16 46 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 47 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -62.07 382.70 4.14 -57.93 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.64 Total: 23.73 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: 5.57 Total: -15.22 kcal Atomic # 7 Polarization: -107.13 SS G_CDS: -4.09 Total: -111.23 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -62.07 4.14 -57.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647230951.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.893 kcal (2) G-P(sol) polarization free energy of solvation -62.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds