Wall clock time and date at job start Tue Mar 31 2020 11:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47373 * 2 1 4 4 N 1.46497 * 109.47042 * 120.00656 * 2 1 3 5 5 N 1.40295 * 126.08966 * 299.96837 * 4 2 1 6 6 C 1.31076 * 108.26987 * 179.97438 * 5 4 2 7 7 C 1.39304 * 108.07516 * 0.02562 * 6 5 4 8 8 C 1.34326 * 126.09254 * 119.99780 * 4 2 1 9 9 C 1.50823 * 128.03460 * 0.12394 * 8 4 2 10 10 H 1.09001 * 109.70777 * 283.11424 * 9 8 4 11 11 N 1.46895 * 109.68565 * 43.64993 * 9 8 4 12 12 C 1.46907 * 111.00133 * 203.92888 * 11 9 8 13 13 C 1.52996 * 109.47023 * 180.02562 * 12 11 9 14 14 H 1.08994 * 109.47407 * 54.99496 * 13 12 11 15 15 C 1.47202 * 109.47032 * 294.99579 * 13 12 11 16 16 N 3.80221 * 108.80457 * 282.44207 * 2 1 3 17 17 C 1.53000 * 109.47246 * 174.99969 * 13 12 11 18 18 C 1.50696 * 109.47457 * 184.99530 * 17 13 12 19 19 H 1.08003 * 120.00087 * 0.02562 * 18 17 13 20 20 C 1.37875 * 119.99956 * 179.97438 * 18 17 13 21 21 N 1.31510 * 120.00308 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99908 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46845 * 60.00735 * 22 20 18 24 24 H 1.48503 * 109.47399 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47295 * 300.00832 * 22 20 18 26 26 C 1.53360 * 108.38403 * 163.37911 * 9 8 4 27 27 C 1.53104 * 109.51326 * 49.93808 * 26 9 8 28 28 C 1.50838 * 127.89385 * 180.02562 * 7 6 5 29 29 H 1.09003 * 109.47022 * 299.99939 * 1 2 3 30 30 H 1.09004 * 109.47211 * 59.99789 * 1 2 3 31 31 H 1.08997 * 109.47421 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46530 * 240.00203 * 2 1 3 33 33 H 1.08998 * 109.47748 * 300.00515 * 3 2 1 34 34 H 1.09005 * 109.47126 * 60.00568 * 3 2 1 35 35 H 1.08999 * 109.47577 * 180.02562 * 3 2 1 36 36 H 1.07998 * 125.96054 * 179.97438 * 6 5 4 37 37 H 1.00899 * 111.00196 * 79.97533 * 11 9 8 38 38 H 1.08999 * 109.47054 * 59.99874 * 12 11 9 39 39 H 1.08997 * 109.46880 * 300.00034 * 12 11 9 40 40 H 1.09001 * 109.47194 * 64.99494 * 17 13 12 41 41 H 1.09004 * 109.46724 * 305.00153 * 17 13 12 42 42 H 0.97000 * 119.99806 * 0.02562 * 21 20 18 43 43 H 1.09005 * 109.46701 * 169.95519 * 26 9 8 44 44 H 1.08998 * 109.46163 * 289.93028 * 26 9 8 45 45 H 1.09011 * 109.46227 * 49.74745 * 27 26 9 46 46 H 1.08997 * 109.46572 * 169.72934 * 27 26 9 47 47 H 1.08997 * 109.68931 * 43.69886 * 28 7 6 48 48 H 1.09001 * 109.68444 * 283.13192 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 7 1.7598 -0.3243 2.5254 6 6 2.3642 -1.1805 3.3126 7 6 3.0225 -2.1123 2.5133 8 6 2.7937 -1.7874 1.2154 9 6 3.3421 -2.5585 0.0409 10 1 2.5554 -3.1752 -0.3936 11 7 3.8528 -1.6232 -0.9702 12 6 3.8632 -2.2422 -2.3024 13 6 4.4006 -1.2402 -3.3261 14 1 5.3789 -0.8824 -3.0054 15 6 3.4728 -0.1023 -3.4327 16 7 2.7556 0.7755 -3.5147 17 6 4.5289 -1.9229 -4.6893 18 6 5.1721 -0.9743 -5.6677 19 1 5.4610 0.0164 -5.3491 20 6 5.3928 -1.3715 -6.9695 21 7 5.0416 -2.5780 -7.3574 22 14 6.1908 -0.1958 -8.1821 23 1 7.5393 0.1836 -7.6893 24 1 6.3153 -0.8585 -9.5053 25 1 5.3519 1.0222 -8.3159 26 6 4.4833 -3.4532 0.5401 27 6 4.0151 -4.2434 1.7651 28 6 3.8537 -3.2904 2.9567 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8932 -0.5138 -0.8901 33 1 1.6767 1.9564 -0.8899 34 1 1.6768 1.9562 0.8901 35 1 3.1300 1.4424 -0.0005 36 1 2.3543 -1.1656 4.3925 37 1 4.7707 -1.2867 -0.7207 38 1 2.8489 -2.5330 -2.5759 39 1 4.5027 -3.1247 -2.2880 40 1 3.5390 -2.2016 -5.0507 41 1 5.1449 -2.8169 -4.5913 42 1 4.6269 -3.1883 -6.7278 43 1 4.7738 -4.1460 -0.2498 44 1 5.3378 -2.8339 0.8123 45 1 3.0591 -4.7196 1.5465 46 1 4.7538 -5.0069 2.0088 47 1 3.3507 -3.8082 3.7733 48 1 4.8329 -2.9449 3.2881 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647230952.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:48 Heat of formation + Delta-G solvation = 73.207229 kcal Electronic energy + Delta-G solvation = -27115.728613 eV Core-core repulsion = 23591.994810 eV Total energy + Delta-G solvation = -3523.733803 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.60202 -38.09419 -36.73536 -35.69102 -34.50008 -33.68587 -31.89249 -30.38804 -29.36130 -28.07964 -27.24718 -25.82422 -23.40889 -22.92666 -22.43362 -22.13621 -22.02493 -19.58311 -18.93438 -17.55327 -16.91997 -16.56256 -15.66086 -15.00711 -14.72236 -14.70976 -14.51942 -14.11802 -13.95775 -13.79598 -13.71848 -13.47261 -13.30497 -13.00909 -12.78497 -12.38378 -12.33583 -12.21523 -12.17036 -11.97201 -11.89980 -11.47808 -11.43618 -11.31564 -11.15827 -11.13285 -11.04065 -10.87387 -10.68889 -10.44157 -10.33882 -10.21455 -9.97324 -9.21913 -8.73869 -8.58142 -8.46244 -8.18043 -6.49108 -4.20952 1.92746 2.57509 2.79667 3.38780 3.41558 3.54290 3.58823 3.63393 3.95577 4.39132 4.45680 4.51797 4.62144 4.67906 4.78264 4.97094 4.97388 4.98455 5.13946 5.19374 5.29387 5.30935 5.33230 5.43527 5.47902 5.53083 5.58463 5.62203 5.67353 5.70502 5.76382 5.78079 5.86467 5.93567 5.98192 6.07311 6.12066 6.17596 6.23283 6.23663 6.24118 6.73954 6.78719 7.00543 7.13874 7.16471 7.20460 7.83579 7.95783 8.27974 8.40952 8.72997 9.50199 10.91614 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.017161 B = 0.003436 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.202487 B = 8147.244606 C = 9316.045669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.155 3.845 3 C -0.150 4.150 4 N -0.334 5.334 5 N -0.302 5.302 6 C 0.043 3.957 7 C -0.250 4.250 8 C 0.102 3.898 9 C 0.150 3.850 10 H 0.095 0.905 11 N -0.690 5.690 12 C 0.064 3.936 13 C 0.017 3.983 14 H 0.101 0.899 15 C 0.250 3.750 16 N -0.469 5.469 17 C 0.019 3.981 18 C -0.607 4.607 19 H 0.051 0.949 20 C 0.022 3.978 21 N -0.907 5.907 22 Si 1.065 2.935 23 H -0.286 1.286 24 H -0.281 1.281 25 H -0.288 1.288 26 C -0.140 4.140 27 C -0.115 4.115 28 C -0.036 4.036 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.125 0.875 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.175 0.825 37 H 0.349 0.651 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.017 0.983 41 H 0.028 0.972 42 H 0.269 0.731 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.579 -3.497 20.165 20.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.054 3.946 3 C -0.208 4.208 4 N -0.114 5.114 5 N -0.124 5.124 6 C -0.141 4.141 7 C -0.263 4.263 8 C -0.029 4.029 9 C 0.038 3.962 10 H 0.113 0.887 11 N -0.321 5.321 12 C -0.066 4.066 13 C -0.005 4.005 14 H 0.119 0.881 15 C -0.067 4.067 16 N -0.146 5.146 17 C -0.019 4.019 18 C -0.645 4.645 19 H 0.069 0.931 20 C -0.183 4.183 21 N -0.543 5.543 22 Si 0.893 3.107 23 H -0.212 1.212 24 H -0.207 1.207 25 H -0.214 1.214 26 C -0.180 4.180 27 C -0.153 4.153 28 C -0.075 4.075 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.143 0.857 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.192 0.808 37 H 0.168 0.832 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.035 0.965 41 H 0.046 0.954 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.578 -0.553 18.162 18.738 hybrid contribution 1.013 -1.663 1.758 2.624 sum -3.565 -2.216 19.921 20.358 Atomic orbital electron populations 1.22144 0.94321 1.02366 1.03065 1.21530 0.94357 0.94437 0.84315 1.21988 1.01807 0.94469 1.02524 1.48540 1.37208 1.20430 1.05235 1.77435 1.24584 1.23565 0.86785 1.23441 0.97464 0.93583 0.99630 1.19837 1.11157 1.03811 0.91463 1.20779 0.95823 0.90473 0.95861 1.20224 0.96856 0.90793 0.88305 0.88709 1.60600 1.32092 1.37563 1.01832 1.22166 1.01997 0.95794 0.86634 1.19039 0.94417 0.88377 0.98712 0.88135 1.28816 0.93279 0.93722 0.90879 1.81017 1.11281 1.11457 1.10859 1.19272 0.97580 0.96304 0.88790 1.21945 1.44359 1.00974 0.97233 0.93111 1.25777 0.95957 0.98764 0.97799 1.70814 1.38372 1.06399 1.38710 0.83590 0.76192 0.74852 0.76099 1.21248 1.20656 1.21430 1.22261 0.98066 0.99102 0.98578 1.21555 1.01541 0.97669 0.94563 1.19940 0.98011 0.92357 0.97154 0.91621 0.90771 0.92590 0.85745 0.90776 0.92185 0.92186 0.80761 0.83153 0.90399 0.92672 0.96496 0.95389 0.92059 0.90746 0.91048 0.91745 0.91479 0.91500 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.46 37.16 0.35 -1.63 16 2 C 0.15 2.07 3.44 -67.94 -0.23 1.84 16 3 C -0.15 -2.04 9.45 37.15 0.35 -1.69 16 4 N -0.33 -4.52 3.26 -50.69 -0.17 -4.69 16 5 N -0.30 -4.28 12.45 30.55 0.38 -3.90 16 6 C 0.04 0.51 12.00 -17.48 -0.21 0.30 16 7 C -0.25 -2.84 5.91 -105.05 -0.62 -3.46 16 8 C 0.10 1.24 6.41 -82.33 -0.53 0.72 16 9 C 0.15 1.55 2.53 -68.62 -0.17 1.38 16 10 H 0.10 0.99 7.82 -51.93 -0.41 0.59 16 11 N -0.69 -7.78 3.99 -107.69 -0.43 -8.21 16 12 C 0.06 0.80 4.86 -3.82 -0.02 0.78 16 13 C 0.02 0.28 2.35 -93.41 -0.22 0.06 16 14 H 0.10 1.59 8.14 -51.93 -0.42 1.16 16 15 C 0.25 4.77 13.67 -20.74 -0.28 4.48 16 16 N -0.47 -9.64 18.54 42.17 0.78 -8.85 16 17 C 0.02 0.41 3.73 -27.88 -0.10 0.31 16 18 C -0.61 -15.74 8.60 -34.44 -0.30 -16.03 16 19 H 0.05 1.33 7.59 -52.48 -0.40 0.93 16 20 C 0.02 0.59 5.46 -17.82 -0.10 0.49 16 21 N -0.91 -26.03 13.65 55.43 0.76 -25.27 16 22 Si 1.06 24.44 29.90 -169.99 -5.08 19.35 16 23 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 26 C -0.14 -1.19 5.19 -26.49 -0.14 -1.33 16 27 C -0.12 -0.90 5.90 -26.45 -0.16 -1.05 16 28 C -0.04 -0.31 6.28 -27.59 -0.17 -0.48 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.12 1.78 6.04 -51.93 -0.31 1.46 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.18 1.55 8.06 -52.49 -0.42 1.12 16 37 H 0.35 3.75 8.35 -39.29 -0.33 3.42 16 38 H 0.08 1.01 8.06 -51.93 -0.42 0.59 16 39 H 0.06 0.62 7.69 -51.93 -0.40 0.22 16 40 H 0.02 0.39 8.01 -51.93 -0.42 -0.02 16 41 H 0.03 0.60 8.01 -51.93 -0.42 0.19 16 42 H 0.27 7.52 7.22 -40.82 -0.29 7.23 16 43 H 0.07 0.59 7.77 -51.93 -0.40 0.19 16 44 H 0.07 0.62 7.91 -51.93 -0.41 0.21 16 45 H 0.06 0.52 8.11 -51.92 -0.42 0.10 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 390.43 15.07 5.88 5.88 Total: -1.00 -30.40 390.43 -8.50 -38.90 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -8.07 Total: 2.10 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -2.55 Total: -15.32 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: 1.32 Total: -50.92 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -5.08 Total: 19.35 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.40 -8.50 -38.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647230952.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.106 kcal (2) G-P(sol) polarization free energy of solvation -30.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds