Wall clock time and date at job start Tue Mar 31 2020 11:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47373 * 2 1 4 4 N 1.46497 * 109.47042 * 120.00656 * 2 1 3 5 5 N 1.40295 * 126.08966 * 299.96837 * 4 2 1 6 6 C 1.31076 * 108.26987 * 179.97438 * 5 4 2 7 7 C 1.39304 * 108.07516 * 0.02562 * 6 5 4 8 8 C 1.34326 * 126.09254 * 119.99780 * 4 2 1 9 9 C 1.50823 * 128.03460 * 0.12394 * 8 4 2 10 10 H 1.09001 * 109.70777 * 283.11424 * 9 8 4 11 11 N 1.46895 * 109.68565 * 43.64993 * 9 8 4 12 12 C 1.46907 * 111.00133 * 203.92888 * 11 9 8 13 13 C 1.52996 * 109.47023 * 180.02562 * 12 11 9 14 14 H 1.08994 * 109.47407 * 54.99496 * 13 12 11 15 15 C 1.47202 * 109.47032 * 294.99579 * 13 12 11 16 16 N 3.80221 * 108.80457 * 282.44207 * 2 1 3 17 17 C 1.53000 * 109.47246 * 174.99969 * 13 12 11 18 18 C 1.50696 * 109.47457 * 184.99530 * 17 13 12 19 19 H 1.08003 * 120.00087 * 0.02562 * 18 17 13 20 20 C 1.37875 * 119.99956 * 179.97438 * 18 17 13 21 21 N 1.31510 * 120.00308 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99908 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46845 * 60.00735 * 22 20 18 24 24 H 1.48503 * 109.47399 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47295 * 300.00832 * 22 20 18 26 26 C 1.53360 * 108.38403 * 163.37911 * 9 8 4 27 27 C 1.53104 * 109.51326 * 49.93808 * 26 9 8 28 28 C 1.50838 * 127.89385 * 180.02562 * 7 6 5 29 29 H 1.09003 * 109.47022 * 299.99939 * 1 2 3 30 30 H 1.09004 * 109.47211 * 59.99789 * 1 2 3 31 31 H 1.08997 * 109.47421 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46530 * 240.00203 * 2 1 3 33 33 H 1.08998 * 109.47748 * 300.00515 * 3 2 1 34 34 H 1.09005 * 109.47126 * 60.00568 * 3 2 1 35 35 H 1.08999 * 109.47577 * 180.02562 * 3 2 1 36 36 H 1.07998 * 125.96054 * 179.97438 * 6 5 4 37 37 H 1.00899 * 111.00196 * 79.97533 * 11 9 8 38 38 H 1.08999 * 109.47054 * 59.99874 * 12 11 9 39 39 H 1.08997 * 109.46880 * 300.00034 * 12 11 9 40 40 H 1.09001 * 109.47194 * 64.99494 * 17 13 12 41 41 H 1.09004 * 109.46724 * 305.00153 * 17 13 12 42 42 H 0.97000 * 119.99806 * 0.02562 * 21 20 18 43 43 H 1.09005 * 109.46701 * 169.95519 * 26 9 8 44 44 H 1.08998 * 109.46163 * 289.93028 * 26 9 8 45 45 H 1.09011 * 109.46227 * 49.74745 * 27 26 9 46 46 H 1.08997 * 109.46572 * 169.72934 * 27 26 9 47 47 H 1.08997 * 109.68931 * 43.69886 * 28 7 6 48 48 H 1.09001 * 109.68444 * 283.13192 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 7 1.7598 -0.3243 2.5254 6 6 2.3642 -1.1805 3.3126 7 6 3.0225 -2.1123 2.5133 8 6 2.7937 -1.7874 1.2154 9 6 3.3421 -2.5585 0.0409 10 1 2.5554 -3.1752 -0.3936 11 7 3.8528 -1.6232 -0.9702 12 6 3.8632 -2.2422 -2.3024 13 6 4.4006 -1.2402 -3.3261 14 1 5.3789 -0.8824 -3.0054 15 6 3.4728 -0.1023 -3.4327 16 7 2.7556 0.7755 -3.5147 17 6 4.5289 -1.9229 -4.6893 18 6 5.1721 -0.9743 -5.6677 19 1 5.4610 0.0164 -5.3491 20 6 5.3928 -1.3715 -6.9695 21 7 5.0416 -2.5780 -7.3574 22 14 6.1908 -0.1958 -8.1821 23 1 7.5393 0.1836 -7.6893 24 1 6.3153 -0.8585 -9.5053 25 1 5.3519 1.0222 -8.3159 26 6 4.4833 -3.4532 0.5401 27 6 4.0151 -4.2434 1.7651 28 6 3.8537 -3.2904 2.9567 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8932 -0.5138 -0.8901 33 1 1.6767 1.9564 -0.8899 34 1 1.6768 1.9562 0.8901 35 1 3.1300 1.4424 -0.0005 36 1 2.3543 -1.1656 4.3925 37 1 4.7707 -1.2867 -0.7207 38 1 2.8489 -2.5330 -2.5759 39 1 4.5027 -3.1247 -2.2880 40 1 3.5390 -2.2016 -5.0507 41 1 5.1449 -2.8169 -4.5913 42 1 4.6269 -3.1883 -6.7278 43 1 4.7738 -4.1460 -0.2498 44 1 5.3378 -2.8339 0.8123 45 1 3.0591 -4.7196 1.5465 46 1 4.7538 -5.0069 2.0088 47 1 3.3507 -3.8082 3.7733 48 1 4.8329 -2.9449 3.2881 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647230952.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:47 Heat of formation + Delta-G solvation = 57.289891 kcal Electronic energy + Delta-G solvation = -27116.418841 eV Core-core repulsion = 23591.994810 eV Total energy + Delta-G solvation = -3524.424031 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.49771 -39.17984 -37.86811 -36.78574 -35.92473 -35.13914 -33.28108 -31.49534 -30.18394 -29.13700 -28.30956 -27.30879 -24.74252 -23.87865 -23.76245 -23.37553 -22.78433 -20.52553 -19.80929 -19.09752 -18.46944 -17.70434 -16.60171 -16.09438 -15.81533 -15.70925 -15.60520 -15.50686 -15.19426 -15.06270 -14.67861 -14.54050 -14.26994 -14.05126 -13.95580 -13.85366 -13.57984 -13.45082 -13.24719 -13.22800 -13.10135 -12.77331 -12.73184 -12.43717 -12.38752 -12.27504 -12.14740 -12.00407 -11.92666 -11.75149 -11.66816 -11.39995 -11.23140 -10.66073 -10.51388 -10.18627 -9.45035 -9.06238 -8.61609 -6.32779 0.99902 1.54475 1.59959 1.63421 1.78849 1.92268 2.03182 2.08768 2.56677 3.01294 3.19911 3.28925 3.57740 3.60171 3.85029 3.94422 4.02475 4.08268 4.13997 4.23409 4.26747 4.29799 4.42332 4.49917 4.53955 4.62718 4.63869 4.69313 4.71667 4.76447 4.78050 4.85937 4.87643 5.02557 5.03170 5.08953 5.13495 5.23388 5.28077 5.32444 5.40723 5.44399 5.48522 5.83006 5.90037 6.00373 6.23140 6.24231 6.32390 6.65244 6.86759 6.91028 7.44245 8.80742 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.017161 B = 0.003436 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.202487 B = 8147.244606 C = 9316.045669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.157 3.843 3 C -0.139 4.139 4 N -0.345 5.345 5 N -0.336 5.336 6 C 0.039 3.961 7 C -0.251 4.251 8 C 0.088 3.912 9 C 0.154 3.846 10 H 0.094 0.906 11 N -0.695 5.695 12 C 0.079 3.921 13 C 0.027 3.973 14 H 0.116 0.884 15 C 0.256 3.744 16 N -0.498 5.498 17 C 0.023 3.977 18 C -0.614 4.614 19 H 0.045 0.955 20 C -0.028 4.028 21 N -0.936 5.936 22 Si 1.102 2.898 23 H -0.265 1.265 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.135 4.135 27 C -0.112 4.112 28 C -0.034 4.034 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.116 0.884 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.201 0.799 37 H 0.354 0.646 38 H 0.074 0.926 39 H 0.077 0.923 40 H -0.003 1.003 41 H 0.033 0.967 42 H 0.262 0.738 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.085 0.915 47 H 0.079 0.921 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.503 -4.359 21.602 22.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.055 3.945 3 C -0.197 4.197 4 N -0.126 5.126 5 N -0.158 5.158 6 C -0.145 4.145 7 C -0.263 4.263 8 C -0.043 4.043 9 C 0.043 3.957 10 H 0.112 0.888 11 N -0.326 5.326 12 C -0.050 4.050 13 C 0.005 3.995 14 H 0.134 0.866 15 C -0.061 4.061 16 N -0.175 5.175 17 C -0.016 4.016 18 C -0.652 4.652 19 H 0.063 0.937 20 C -0.227 4.227 21 N -0.574 5.574 22 Si 0.925 3.075 23 H -0.190 1.190 24 H -0.210 1.210 25 H -0.211 1.211 26 C -0.174 4.174 27 C -0.150 4.150 28 C -0.072 4.072 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.134 0.866 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.218 0.782 37 H 0.174 0.826 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.016 0.984 41 H 0.051 0.949 42 H 0.072 0.928 43 H 0.103 0.897 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.103 0.897 47 H 0.098 0.902 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.494 -1.418 19.628 19.987 hybrid contribution 0.658 -1.384 1.384 2.065 sum -2.835 -2.802 21.012 21.387 Atomic orbital electron populations 1.22083 0.93797 1.02375 1.03033 1.21419 0.94782 0.93964 0.84323 1.21864 1.00926 0.94889 1.02032 1.48535 1.37979 1.21090 1.04982 1.77389 1.26069 1.25026 0.87322 1.23980 0.96620 0.93062 1.00849 1.20235 1.10794 1.04316 0.90986 1.21211 0.95745 0.90327 0.97004 1.20251 0.97499 0.90483 0.87457 0.88782 1.60466 1.32556 1.38137 1.01462 1.21941 1.01981 0.94981 0.86138 1.18997 0.95027 0.88123 0.97382 0.86638 1.29309 0.92973 0.93687 0.90111 1.81016 1.12363 1.12521 1.11629 1.19132 0.95956 0.96000 0.90528 1.22367 1.43464 1.01313 0.98025 0.93712 1.26951 0.96364 0.99368 1.00059 1.70912 1.40308 1.07296 1.38857 0.83099 0.76605 0.73353 0.74428 1.18997 1.20964 1.21053 1.22228 0.97083 0.98891 0.99235 1.21553 1.01957 0.97715 0.93819 1.20020 0.97925 0.91446 0.97836 0.91998 0.90381 0.92521 0.86590 0.91390 0.92403 0.93253 0.78234 0.82609 0.90781 0.90487 0.98440 0.94900 0.92795 0.89726 0.90932 0.92022 0.89663 0.90225 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 9.46 71.98 0.68 -3.14 16 2 C 0.16 4.18 3.44 44.99 0.15 4.34 16 3 C -0.14 -3.83 9.45 71.98 0.68 -3.14 16 4 N -0.35 -9.16 3.26 -314.30 -1.03 -10.19 16 5 N -0.34 -9.32 12.45 -57.27 -0.71 -10.04 16 6 C 0.04 0.86 12.00 85.06 1.02 1.88 16 7 C -0.25 -5.20 5.91 -20.14 -0.12 -5.32 16 8 C 0.09 2.02 6.41 41.64 0.27 2.29 16 9 C 0.15 2.90 2.53 44.33 0.11 3.01 16 10 H 0.09 1.80 7.82 -2.39 -0.02 1.78 16 11 N -0.69 -14.50 3.99 -494.62 -1.97 -16.47 16 12 C 0.08 1.84 4.86 86.30 0.42 2.26 16 13 C 0.03 0.85 2.35 -12.60 -0.03 0.82 16 14 H 0.12 3.41 8.14 -2.39 -0.02 3.39 16 15 C 0.26 9.61 13.67 89.44 1.22 10.84 16 16 N -0.50 -20.43 18.54 20.01 0.37 -20.06 16 17 C 0.02 0.96 3.73 29.85 0.11 1.08 16 18 C -0.61 -31.54 8.60 25.60 0.22 -31.32 16 19 H 0.04 2.31 7.59 -2.91 -0.02 2.29 16 20 C -0.03 -1.53 5.46 84.65 0.46 -1.07 16 21 N -0.94 -53.94 13.65 21.45 0.29 -53.65 16 22 Si 1.10 48.74 29.90 68.60 2.05 50.79 16 23 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 26 C -0.13 -1.89 5.19 30.75 0.16 -1.73 16 27 C -0.11 -1.39 5.90 30.78 0.18 -1.21 16 28 C -0.03 -0.48 6.28 30.04 0.19 -0.29 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.12 3.29 6.04 -2.38 -0.01 3.28 16 33 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.20 3.12 8.06 -2.91 -0.02 3.10 16 37 H 0.35 6.88 8.35 -89.69 -0.75 6.13 16 38 H 0.07 1.81 8.06 -2.39 -0.02 1.79 16 39 H 0.08 1.49 7.69 -2.39 -0.02 1.48 16 40 H 0.00 -0.13 8.01 -2.39 -0.02 -0.15 16 41 H 0.03 1.38 8.01 -2.39 -0.02 1.36 16 42 H 0.26 14.85 7.22 -92.71 -0.67 14.18 16 43 H 0.08 1.04 7.77 -2.38 -0.02 1.02 16 44 H 0.07 1.03 7.91 -2.39 -0.02 1.01 16 45 H 0.06 0.82 8.11 -2.38 -0.02 0.80 16 46 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -65.29 390.43 5.03 -60.26 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.30 Total: 20.05 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: 5.73 Total: -20.71 kcal Atomic # 7 Polarization: -107.36 SS G_CDS: -3.05 Total: -110.40 kcal Atomic # 14 Polarization: 48.74 SS G_CDS: 2.05 Total: 50.79 kcal Total: -65.29 5.03 -60.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647230952.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.548 kcal (2) G-P(sol) polarization free energy of solvation -65.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds