Wall clock time and date at job start Tue Mar 31 2020 10:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46717 * 2 1 4 4 C 1.50700 * 109.47482 * 119.99853 * 2 1 3 5 5 C 1.38234 * 119.99851 * 119.99782 * 4 2 1 6 6 C 1.38233 * 119.99602 * 180.02562 * 5 4 2 7 7 C 1.38238 * 120.00537 * 359.95828 * 6 5 4 8 8 C 1.50700 * 120.00288 * 180.02562 * 7 6 5 9 9 N 1.46896 * 109.47199 * 90.00059 * 8 7 6 10 10 C 1.46948 * 111.00183 * 170.00086 * 9 8 7 11 11 C 1.53049 * 109.36764 * 183.19149 * 10 9 8 12 12 N 1.46961 * 109.36177 * 301.59566 * 11 10 9 13 13 C 1.46896 * 111.00124 * 183.18463 * 12 11 10 14 14 C 1.52996 * 109.47256 * 170.00033 * 13 12 11 15 15 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.46956 * 110.87704 * 59.32220 * 12 11 10 24 24 C 1.46963 * 111.00029 * 293.80266 * 9 8 7 25 25 C 1.38233 * 119.99435 * 0.27559 * 7 6 5 26 26 C 1.38233 * 120.00318 * 359.51644 * 25 7 6 27 27 H 1.08998 * 109.47579 * 60.00345 * 1 2 3 28 28 H 1.09000 * 109.46847 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47133 * 299.99487 * 1 2 3 30 30 H 1.08997 * 109.47133 * 240.00513 * 2 1 3 31 31 H 1.09003 * 109.46981 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47083 * 299.99654 * 3 2 1 33 33 H 1.08997 * 109.46900 * 60.00370 * 3 2 1 34 34 H 1.07996 * 119.99831 * 359.97438 * 5 4 2 35 35 H 1.08002 * 119.99779 * 179.97438 * 6 5 4 36 36 H 1.09003 * 109.46958 * 329.99874 * 8 7 6 37 37 H 1.08995 * 109.47010 * 210.00100 * 8 7 6 38 38 H 1.08999 * 109.48998 * 63.22220 * 10 9 8 39 39 H 1.09002 * 109.48626 * 303.15745 * 10 9 8 40 40 H 1.09001 * 109.49268 * 181.63226 * 11 10 9 41 41 H 1.09000 * 109.49067 * 61.56179 * 11 10 9 42 42 H 1.09004 * 109.46774 * 50.00232 * 13 12 11 43 43 H 1.09000 * 109.47723 * 290.00621 * 13 12 11 44 44 H 1.09004 * 109.47066 * 60.00378 * 14 13 12 45 45 H 1.08994 * 109.47405 * 300.00209 * 14 13 12 46 46 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 47 47 H 1.08999 * 109.49195 * 60.64478 * 23 12 11 48 48 H 1.09002 * 109.48564 * 180.71036 * 23 12 11 49 49 H 1.09000 * 109.48524 * 296.77653 * 24 9 8 50 50 H 1.09001 * 109.48867 * 56.84120 * 24 9 8 51 51 H 1.08000 * 119.99631 * 179.72206 * 25 7 6 52 52 H 1.07997 * 120.00250 * 180.25269 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.8272 -1.8343 1.1036 6 6 3.2875 -2.4861 2.2323 7 6 2.9540 -2.0137 3.4878 8 6 3.4564 -2.7240 4.7183 9 7 4.7506 -2.1555 5.1178 10 6 5.1593 -2.6532 6.4386 11 6 6.4692 -1.9783 6.8523 12 7 7.5014 -2.2590 5.8445 13 6 8.7956 -1.6904 6.2439 14 6 9.8904 -2.2080 5.3090 15 6 11.2183 -1.6252 5.7192 16 1 11.2756 -0.9531 6.5627 17 6 12.3610 -1.9549 5.0215 18 7 12.2912 -2.7736 3.9946 19 14 14.0079 -1.2384 5.5347 20 1 13.8175 -0.3525 6.7111 21 1 14.9377 -2.3403 5.8907 22 1 14.5782 -0.4534 4.4105 23 6 7.0927 -1.7612 4.5236 24 6 5.7828 -2.4361 4.1099 25 6 2.1553 -0.8926 3.6146 26 6 1.6984 -0.2381 2.4860 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.0876 -2.2035 0.1227 35 1 3.9081 -3.3645 2.1332 36 1 3.5772 -3.7854 4.5012 37 1 2.7386 -2.5984 5.5289 38 1 5.3053 -3.7323 6.3915 39 1 4.3846 -2.4223 7.1698 40 1 6.7894 -2.3674 7.8188 41 1 6.3162 -0.9016 6.9259 42 1 9.0222 -1.9870 7.2681 43 1 8.7494 -0.6031 6.1825 44 1 9.6639 -1.9114 4.2849 45 1 9.9367 -3.2952 5.3706 46 1 13.0950 -3.0052 3.5035 47 1 6.9467 -0.6821 4.5708 48 1 7.8674 -1.9921 3.7924 49 1 5.9358 -3.5128 4.0363 50 1 5.4626 -2.0470 3.1434 51 1 1.8910 -0.5260 4.5955 52 1 1.0778 0.6401 2.5851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049967910.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:59 Heat of formation + Delta-G solvation = 14.212242 kcal Electronic energy + Delta-G solvation = -26219.666437 eV Core-core repulsion = 22796.914763 eV Total energy + Delta-G solvation = -3422.751674 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.02507 -38.82179 -36.33594 -34.96370 -32.98512 -31.22540 -31.08799 -30.45172 -29.44737 -27.42224 -26.93066 -24.74416 -23.54391 -23.23537 -22.86186 -21.66006 -20.28775 -20.06479 -19.36175 -16.62798 -16.52989 -15.90283 -15.69197 -15.29709 -14.74910 -14.64686 -14.48393 -14.40198 -14.06160 -13.91322 -13.82445 -13.65603 -13.56478 -13.32285 -12.66119 -12.61209 -12.34598 -12.14167 -12.06343 -11.89844 -11.68671 -11.39609 -11.35762 -11.20887 -10.99167 -10.95166 -10.86593 -10.81642 -10.69831 -10.49499 -10.36056 -9.80383 -9.32272 -9.08304 -8.96791 -8.68308 -8.31553 -8.24044 -7.67259 -5.98003 -4.00016 1.21760 1.34106 3.32279 3.39587 3.43774 3.55548 4.15487 4.40614 4.41434 4.53607 4.58540 4.73768 4.84293 4.91190 4.92943 5.11855 5.16011 5.21184 5.33127 5.34687 5.35882 5.37710 5.40282 5.48075 5.54036 5.57181 5.63233 5.66377 5.69856 5.71990 5.83921 5.90310 5.94911 5.96337 5.97980 6.01434 6.16390 6.22710 6.33786 6.35672 6.45798 6.52457 6.54675 6.55781 6.91037 6.99762 7.07477 7.13840 7.54917 7.61422 7.82919 7.92460 8.10533 8.45936 9.07420 9.63465 11.13449 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016309 B = 0.002413 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.447176 B =11602.028726 C =12671.467935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.057 4.057 3 C -0.145 4.145 4 C -0.079 4.079 5 C -0.118 4.118 6 C -0.109 4.109 7 C -0.077 4.077 8 C 0.093 3.907 9 N -0.534 5.534 10 C 0.060 3.940 11 C 0.056 3.944 12 N -0.541 5.541 13 C 0.064 3.936 14 C 0.028 3.972 15 C -0.520 4.520 16 H 0.054 0.946 17 C 0.057 3.943 18 N -0.893 5.893 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.059 3.941 24 C 0.057 3.943 25 C -0.097 4.097 26 C -0.117 4.117 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.041 0.959 37 H 0.079 0.921 38 H 0.041 0.959 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.034 0.966 42 H 0.060 0.940 43 H 0.020 0.980 44 H 0.016 0.984 45 H 0.024 0.976 46 H 0.259 0.741 47 H 0.034 0.966 48 H 0.089 0.911 49 H 0.040 0.960 50 H 0.078 0.922 51 H 0.120 0.880 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.051 3.111 -4.723 26.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.076 4.076 3 C -0.202 4.202 4 C -0.079 4.079 5 C -0.136 4.136 6 C -0.128 4.128 7 C -0.078 4.078 8 C -0.034 4.034 9 N -0.259 5.259 10 C -0.068 4.068 11 C -0.072 4.072 12 N -0.266 5.266 13 C -0.063 4.063 14 C -0.009 4.009 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.720 3.280 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.070 4.070 24 C -0.071 4.071 25 C -0.115 4.115 26 C -0.135 4.135 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.060 0.940 37 H 0.098 0.902 38 H 0.059 0.941 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.053 0.947 42 H 0.078 0.922 43 H 0.038 0.962 44 H 0.035 0.965 45 H 0.042 0.958 46 H 0.069 0.931 47 H 0.052 0.948 48 H 0.107 0.893 49 H 0.058 0.942 50 H 0.096 0.904 51 H 0.138 0.862 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -25.932 3.023 -4.829 26.550 hybrid contribution 1.066 0.349 0.235 1.146 sum -24.866 3.371 -4.594 25.511 Atomic orbital electron populations 1.21851 0.94464 1.01902 1.01821 1.20126 0.95815 0.96134 0.95491 1.21860 1.01511 0.95028 1.01789 1.19824 0.97828 0.95707 0.94588 1.21005 0.98376 0.95795 0.98459 1.21070 0.99531 1.00127 0.92070 1.19722 0.97519 0.96318 0.94194 1.21009 0.91761 0.95655 0.94973 1.62193 1.02003 1.58836 1.02882 1.22154 0.96665 0.97788 0.90183 1.22104 0.91029 0.98259 0.95837 1.62271 1.03052 1.59561 1.01681 1.22313 0.87844 0.95727 1.00404 1.19092 0.90832 0.97067 0.93934 1.21240 0.92457 1.27749 1.14467 0.92756 1.25000 0.99115 0.95198 0.95074 1.69985 1.28587 1.34968 1.19722 0.86543 0.84057 0.78935 0.78493 1.19782 1.21014 1.21041 1.22142 0.95561 0.96804 0.92466 1.22275 0.90963 0.98909 0.94968 1.20961 0.97336 0.94798 0.98443 1.20912 1.00710 0.99912 0.91942 0.92501 0.92613 0.92485 0.90582 0.92346 0.92503 0.92463 0.86287 0.86247 0.94036 0.90215 0.94071 0.90889 0.90706 0.94729 0.92158 0.96190 0.96526 0.95810 0.93088 0.94803 0.89276 0.94154 0.90395 0.86190 0.86418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.01 37.16 0.33 -0.61 16 2 C -0.06 -0.44 3.09 -91.77 -0.28 -0.73 16 3 C -0.14 -1.08 9.01 37.16 0.33 -0.75 16 4 C -0.08 -0.76 4.78 -104.62 -0.50 -1.26 16 5 C -0.12 -1.20 9.67 -39.58 -0.38 -1.58 16 6 C -0.11 -1.19 7.92 -39.58 -0.31 -1.50 16 7 C -0.08 -0.86 4.89 -104.62 -0.51 -1.37 16 8 C 0.09 1.03 5.12 -4.98 -0.03 1.01 16 9 N -0.53 -7.17 4.70 -235.92 -1.11 -8.27 16 10 C 0.06 0.79 5.61 -3.77 -0.02 0.77 16 11 C 0.06 0.88 5.61 -3.77 -0.02 0.85 16 12 N -0.54 -10.22 4.71 -234.47 -1.10 -11.33 16 13 C 0.06 1.39 4.90 -3.83 -0.02 1.37 16 14 C 0.03 0.74 4.91 -27.88 -0.14 0.61 16 15 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 16 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -27.12 13.29 55.43 0.74 -26.38 16 19 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 C 0.06 1.05 5.41 -3.77 -0.02 1.03 16 24 C 0.06 0.85 5.26 -3.76 -0.02 0.83 16 25 C -0.10 -1.01 9.70 -39.59 -0.38 -1.40 16 26 C -0.12 -1.13 8.71 -39.58 -0.34 -1.48 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.37 7.39 -51.93 -0.38 -0.02 16 30 H 0.08 0.56 7.88 -51.93 -0.41 0.15 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.42 7.39 -51.93 -0.38 0.04 16 34 H 0.12 1.03 7.95 -52.49 -0.42 0.61 16 35 H 0.12 1.22 7.99 -52.49 -0.42 0.80 16 36 H 0.04 0.45 8.06 -51.93 -0.42 0.03 16 37 H 0.08 0.77 7.97 -51.93 -0.41 0.36 16 38 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 40 H 0.07 1.09 8.07 -51.93 -0.42 0.67 16 41 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 1.29 8.03 -51.93 -0.42 0.87 16 43 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 44 H 0.02 0.46 6.49 -51.93 -0.34 0.12 16 45 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.09 1.77 6.34 -51.93 -0.33 1.44 16 49 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.08 1.11 5.95 -51.93 -0.31 0.80 16 51 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 52 H 0.12 0.96 7.10 -52.49 -0.37 0.58 16 LS Contribution 401.89 15.07 6.06 6.06 Total: -1.00 -30.79 401.89 -12.81 -43.59 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -9.64 Total: -2.63 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -2.73 Total: -17.90 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: -1.48 Total: -45.98 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.79 -12.81 -43.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049967910.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.806 kcal (2) G-P(sol) polarization free energy of solvation -30.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds