Wall clock time and date at job start Tue Mar 31 2020 10:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46717 * 2 1 4 4 C 1.50700 * 109.47482 * 119.99853 * 2 1 3 5 5 C 1.38234 * 119.99851 * 119.99782 * 4 2 1 6 6 C 1.38233 * 119.99602 * 180.02562 * 5 4 2 7 7 C 1.38238 * 120.00537 * 359.95828 * 6 5 4 8 8 C 1.50700 * 120.00288 * 180.02562 * 7 6 5 9 9 N 1.46896 * 109.47199 * 90.00059 * 8 7 6 10 10 C 1.46948 * 111.00183 * 170.00086 * 9 8 7 11 11 C 1.53049 * 109.36764 * 183.19149 * 10 9 8 12 12 N 1.46961 * 109.36177 * 301.59566 * 11 10 9 13 13 C 1.46896 * 111.00124 * 183.18463 * 12 11 10 14 14 C 1.52996 * 109.47256 * 170.00033 * 13 12 11 15 15 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.46956 * 110.87704 * 59.32220 * 12 11 10 24 24 C 1.46963 * 111.00029 * 293.80266 * 9 8 7 25 25 C 1.38233 * 119.99435 * 0.27559 * 7 6 5 26 26 C 1.38233 * 120.00318 * 359.51644 * 25 7 6 27 27 H 1.08998 * 109.47579 * 60.00345 * 1 2 3 28 28 H 1.09000 * 109.46847 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47133 * 299.99487 * 1 2 3 30 30 H 1.08997 * 109.47133 * 240.00513 * 2 1 3 31 31 H 1.09003 * 109.46981 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47083 * 299.99654 * 3 2 1 33 33 H 1.08997 * 109.46900 * 60.00370 * 3 2 1 34 34 H 1.07996 * 119.99831 * 359.97438 * 5 4 2 35 35 H 1.08002 * 119.99779 * 179.97438 * 6 5 4 36 36 H 1.09003 * 109.46958 * 329.99874 * 8 7 6 37 37 H 1.08995 * 109.47010 * 210.00100 * 8 7 6 38 38 H 1.08999 * 109.48998 * 63.22220 * 10 9 8 39 39 H 1.09002 * 109.48626 * 303.15745 * 10 9 8 40 40 H 1.09001 * 109.49268 * 181.63226 * 11 10 9 41 41 H 1.09000 * 109.49067 * 61.56179 * 11 10 9 42 42 H 1.09004 * 109.46774 * 50.00232 * 13 12 11 43 43 H 1.09000 * 109.47723 * 290.00621 * 13 12 11 44 44 H 1.09004 * 109.47066 * 60.00378 * 14 13 12 45 45 H 1.08994 * 109.47405 * 300.00209 * 14 13 12 46 46 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 47 47 H 1.08999 * 109.49195 * 60.64478 * 23 12 11 48 48 H 1.09002 * 109.48564 * 180.71036 * 23 12 11 49 49 H 1.09000 * 109.48524 * 296.77653 * 24 9 8 50 50 H 1.09001 * 109.48867 * 56.84120 * 24 9 8 51 51 H 1.08000 * 119.99631 * 179.72206 * 25 7 6 52 52 H 1.07997 * 120.00250 * 180.25269 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.8272 -1.8343 1.1036 6 6 3.2875 -2.4861 2.2323 7 6 2.9540 -2.0137 3.4878 8 6 3.4564 -2.7240 4.7183 9 7 4.7506 -2.1555 5.1178 10 6 5.1593 -2.6532 6.4386 11 6 6.4692 -1.9783 6.8523 12 7 7.5014 -2.2590 5.8445 13 6 8.7956 -1.6904 6.2439 14 6 9.8904 -2.2080 5.3090 15 6 11.2183 -1.6252 5.7192 16 1 11.2756 -0.9531 6.5627 17 6 12.3610 -1.9549 5.0215 18 7 12.2912 -2.7736 3.9946 19 14 14.0079 -1.2384 5.5347 20 1 13.8175 -0.3525 6.7111 21 1 14.9377 -2.3403 5.8907 22 1 14.5782 -0.4534 4.4105 23 6 7.0927 -1.7612 4.5236 24 6 5.7828 -2.4361 4.1099 25 6 2.1553 -0.8926 3.6146 26 6 1.6984 -0.2381 2.4860 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.0876 -2.2035 0.1227 35 1 3.9081 -3.3645 2.1332 36 1 3.5772 -3.7854 4.5012 37 1 2.7386 -2.5984 5.5289 38 1 5.3053 -3.7323 6.3915 39 1 4.3846 -2.4223 7.1698 40 1 6.7894 -2.3674 7.8188 41 1 6.3162 -0.9016 6.9259 42 1 9.0222 -1.9870 7.2681 43 1 8.7494 -0.6031 6.1825 44 1 9.6639 -1.9114 4.2849 45 1 9.9367 -3.2952 5.3706 46 1 13.0950 -3.0052 3.5035 47 1 6.9467 -0.6821 4.5708 48 1 7.8674 -1.9921 3.7924 49 1 5.9358 -3.5128 4.0363 50 1 5.4626 -2.0470 3.1434 51 1 1.8910 -0.5260 4.5955 52 1 1.0778 0.6401 2.5851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049967910.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:58 Heat of formation + Delta-G solvation = -2.750831 kcal Electronic energy + Delta-G solvation = -26220.402012 eV Core-core repulsion = 22796.914763 eV Total energy + Delta-G solvation = -3423.487248 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.90087 -39.96954 -37.42735 -36.04016 -34.96423 -32.47681 -32.03231 -31.61420 -30.90885 -28.25631 -27.96526 -26.24164 -24.94584 -24.54235 -23.67513 -22.52892 -22.06542 -20.79797 -20.66340 -18.62557 -17.39045 -17.10939 -16.69544 -16.54323 -16.12462 -16.00651 -15.74910 -15.52410 -15.25694 -15.17113 -14.76438 -14.47019 -14.38999 -14.31254 -14.17252 -13.99845 -13.33047 -13.29715 -13.14904 -12.95491 -12.84069 -12.74728 -12.68603 -12.44601 -12.24850 -12.17583 -12.01678 -11.95003 -11.90104 -11.75763 -11.47465 -11.42793 -11.26401 -11.16069 -10.55414 -9.75325 -9.52225 -9.31098 -9.16088 -8.21029 -6.32363 0.43357 0.56095 1.39453 1.39932 1.53403 2.39484 2.70205 3.04662 3.12174 3.18399 3.73171 3.86857 3.90606 3.93009 4.10206 4.12491 4.18506 4.21711 4.32066 4.34323 4.42624 4.48074 4.52234 4.55570 4.59742 4.60088 4.68259 4.72895 4.79677 4.82107 4.83232 4.91859 4.97336 4.99007 5.00756 5.04007 5.10636 5.11272 5.21651 5.23927 5.36144 5.40085 5.43958 5.57543 5.63874 5.73703 5.76014 5.79389 5.99785 6.00073 6.12630 6.18696 6.29817 6.32136 6.84626 7.36641 8.91382 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016309 B = 0.002413 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.447176 B =11602.028726 C =12671.467935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.057 4.057 3 C -0.143 4.143 4 C -0.082 4.082 5 C -0.131 4.131 6 C -0.122 4.122 7 C -0.091 4.091 8 C 0.098 3.902 9 N -0.539 5.539 10 C 0.065 3.935 11 C 0.055 3.945 12 N -0.551 5.551 13 C 0.080 3.920 14 C 0.038 3.962 15 C -0.544 4.544 16 H 0.060 0.940 17 C 0.000 4.000 18 N -0.931 5.931 19 Si 0.968 3.032 20 H -0.262 1.262 21 H -0.277 1.277 22 H -0.278 1.278 23 C 0.062 3.938 24 C 0.071 3.929 25 C -0.104 4.104 26 C -0.122 4.122 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.129 0.871 35 H 0.118 0.882 36 H 0.043 0.957 37 H 0.100 0.900 38 H 0.038 0.962 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.034 0.966 42 H 0.066 0.934 43 H 0.017 0.983 44 H -0.008 1.008 45 H -0.008 1.008 46 H 0.264 0.736 47 H 0.027 0.973 48 H 0.059 0.941 49 H 0.033 0.967 50 H 0.083 0.917 51 H 0.132 0.868 52 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.377 4.136 -3.858 27.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.076 4.076 3 C -0.200 4.200 4 C -0.083 4.083 5 C -0.149 4.149 6 C -0.140 4.140 7 C -0.092 4.092 8 C -0.029 4.029 9 N -0.264 5.264 10 C -0.063 4.063 11 C -0.073 4.073 12 N -0.277 5.277 13 C -0.047 4.047 14 C 0.000 4.000 15 C -0.582 4.582 16 H 0.078 0.922 17 C -0.198 4.198 18 N -0.572 5.572 19 Si 0.792 3.208 20 H -0.186 1.186 21 H -0.203 1.203 22 H -0.203 1.203 23 C -0.066 4.066 24 C -0.057 4.057 25 C -0.122 4.122 26 C -0.140 4.140 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.147 0.853 35 H 0.136 0.864 36 H 0.061 0.939 37 H 0.118 0.882 38 H 0.056 0.944 39 H 0.123 0.877 40 H 0.105 0.895 41 H 0.052 0.948 42 H 0.085 0.915 43 H 0.035 0.965 44 H 0.011 0.989 45 H 0.010 0.990 46 H 0.072 0.928 47 H 0.045 0.955 48 H 0.077 0.923 49 H 0.051 0.949 50 H 0.101 0.899 51 H 0.150 0.850 52 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -27.287 4.048 -3.954 27.867 hybrid contribution 1.420 0.023 -0.084 1.422 sum -25.867 4.071 -4.038 26.495 Atomic orbital electron populations 1.21825 0.93393 1.01930 1.02555 1.20169 0.96656 0.96041 0.94711 1.21850 1.00636 0.95007 1.02553 1.20094 0.97258 0.95445 0.95459 1.21224 0.98638 0.96199 0.98816 1.21186 0.99900 1.00425 0.92530 1.19800 0.98250 0.96938 0.94170 1.21044 0.90621 0.95540 0.95712 1.62187 1.02366 1.59306 1.02522 1.22170 0.96180 0.97208 0.90728 1.22230 0.91104 0.98635 0.95302 1.62203 1.02992 1.59536 1.02924 1.21956 0.88231 0.95254 0.99266 1.18906 0.92333 0.94922 0.93822 1.21650 0.93636 1.28100 1.14821 0.92186 1.25986 1.03478 0.95429 0.94897 1.70122 1.29977 1.36185 1.20870 0.85360 0.78610 0.78330 0.78493 1.18551 1.20266 1.20332 1.22049 0.96362 0.96656 0.91534 1.22049 0.90003 0.97922 0.95768 1.21167 0.97156 0.94603 0.99296 1.21146 1.00709 1.00327 0.91787 0.91304 0.92935 0.92234 0.90351 0.93678 0.91180 0.92290 0.85334 0.86353 0.93913 0.88203 0.94416 0.87664 0.89542 0.94810 0.91527 0.96490 0.98949 0.99006 0.92753 0.95478 0.92275 0.94895 0.89872 0.85032 0.84849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.01 71.98 0.65 -0.94 16 2 C -0.06 -0.81 3.09 -11.54 -0.04 -0.85 16 3 C -0.14 -1.95 9.01 71.98 0.65 -1.30 16 4 C -0.08 -1.50 4.78 -19.87 -0.09 -1.59 16 5 C -0.13 -2.60 9.67 22.27 0.22 -2.38 16 6 C -0.12 -2.61 7.92 22.27 0.18 -2.43 16 7 C -0.09 -1.92 4.89 -19.87 -0.10 -2.02 16 8 C 0.10 1.98 5.12 85.56 0.44 2.42 16 9 N -0.54 -13.68 4.70 -900.31 -4.23 -17.91 16 10 C 0.06 1.57 5.61 86.31 0.48 2.05 16 11 C 0.06 1.64 5.61 86.31 0.48 2.12 16 12 N -0.55 -21.11 4.71 -895.72 -4.22 -25.33 16 13 C 0.08 3.57 4.90 86.30 0.42 3.99 16 14 C 0.04 2.08 4.91 29.85 0.15 2.22 16 15 C -0.54 -31.80 9.11 25.60 0.23 -31.57 16 16 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 17 C 0.00 0.00 5.46 84.66 0.46 0.46 16 18 N -0.93 -57.87 13.29 21.45 0.28 -57.58 16 19 Si 0.97 45.02 29.54 68.60 2.03 47.04 16 20 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 23 C 0.06 2.32 5.41 86.31 0.47 2.79 16 24 C 0.07 2.13 5.26 86.31 0.45 2.58 16 25 C -0.10 -2.00 9.70 22.27 0.22 -1.79 16 26 C -0.12 -2.18 8.71 22.27 0.19 -1.99 16 27 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.65 7.39 -2.39 -0.02 0.63 16 30 H 0.08 1.06 7.88 -2.39 -0.02 1.04 16 31 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.77 7.39 -2.39 -0.02 0.75 16 34 H 0.13 2.18 7.95 -2.91 -0.02 2.16 16 35 H 0.12 2.45 7.99 -2.91 -0.02 2.43 16 36 H 0.04 0.87 8.06 -2.39 -0.02 0.85 16 37 H 0.10 1.63 7.97 -2.39 -0.02 1.62 16 38 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.11 1.92 8.07 -2.39 -0.02 1.90 16 40 H 0.09 2.36 8.07 -2.39 -0.02 2.34 16 41 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.07 2.85 8.03 -2.38 -0.02 2.83 16 43 H 0.02 0.75 8.12 -2.39 -0.02 0.74 16 44 H -0.01 -0.46 6.49 -2.38 -0.02 -0.48 16 45 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 46 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 47 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.06 2.51 6.34 -2.39 -0.02 2.50 16 49 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.08 2.40 5.95 -2.39 -0.01 2.39 16 51 H 0.13 2.16 8.06 -2.91 -0.02 2.14 16 52 H 0.13 1.90 7.10 -2.91 -0.02 1.88 16 Total: -1.00 -67.05 401.89 0.17 -66.88 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.85 Total: 15.12 kcal Atomic # 6 Polarization: -33.68 SS G_CDS: 5.46 Total: -28.22 kcal Atomic # 7 Polarization: -92.66 SS G_CDS: -8.17 Total: -100.83 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -67.05 0.17 -66.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049967910.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.133 kcal (2) G-P(sol) polarization free energy of solvation -67.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds