Wall clock time and date at job start Tue Mar 31 2020 11:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.46972 * 2 1 4 4 H 1.08995 * 109.47394 * 55.00444 * 3 2 1 5 5 C 1.50706 * 109.47262 * 174.99997 * 3 2 1 6 6 H 1.08002 * 120.00139 * 119.99561 * 5 3 2 7 7 C 1.37877 * 119.99875 * 300.00514 * 5 3 2 8 8 N 1.31519 * 120.00066 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99876 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46738 * 60.00494 * 9 7 5 11 11 H 1.48508 * 109.46792 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47367 * 300.00012 * 9 7 5 13 13 N 1.46901 * 109.47874 * 294.99976 * 3 2 1 14 14 C 1.46890 * 111.00340 * 156.17868 * 13 3 2 15 15 C 1.53123 * 109.52543 * 154.54658 * 14 13 3 16 16 C 1.53030 * 109.28426 * 177.62491 * 15 14 13 17 17 N 1.46854 * 109.52339 * 300.82807 * 16 15 14 18 18 C 1.46896 * 110.99897 * 185.83720 * 17 16 15 19 19 C 1.53007 * 109.47024 * 169.99596 * 18 17 16 20 20 C 1.50700 * 109.46973 * 180.02562 * 19 18 17 21 21 C 1.38226 * 120.00265 * 90.00246 * 20 19 18 22 22 C 1.38237 * 120.00356 * 180.27741 * 21 20 19 23 23 C 1.38242 * 119.99718 * 359.48663 * 22 21 20 24 24 C 1.38235 * 119.99543 * 0.50832 * 23 22 21 25 25 C 1.38236 * 120.00356 * 359.75087 * 24 23 22 26 26 C 1.46847 * 111.19942 * 61.73635 * 17 16 15 27 27 C 1.53034 * 109.52252 * 298.26049 * 26 17 16 28 28 H 1.09005 * 109.46924 * 295.41814 * 1 2 3 29 29 H 1.08995 * 109.47664 * 55.41341 * 1 2 3 30 30 H 1.08998 * 109.47567 * 175.41884 * 1 2 3 31 31 H 1.09003 * 109.46794 * 240.00830 * 2 1 3 32 32 H 1.08995 * 109.47549 * 120.00492 * 2 1 3 33 33 H 0.96997 * 119.99782 * 179.97438 * 8 7 5 34 34 H 1.00900 * 110.99940 * 280.14311 * 13 3 2 35 35 H 1.09004 * 109.52184 * 34.42589 * 14 13 3 36 36 H 1.09005 * 109.49633 * 57.68390 * 15 14 13 37 37 H 1.08997 * 109.50322 * 297.57161 * 15 14 13 38 38 H 1.08993 * 109.46838 * 180.80920 * 16 15 14 39 39 H 1.09004 * 109.45471 * 60.82864 * 16 15 14 40 40 H 1.09003 * 109.47506 * 49.99840 * 18 17 16 41 41 H 1.09001 * 109.47291 * 289.99648 * 18 17 16 42 42 H 1.08996 * 109.47047 * 60.00076 * 19 18 17 43 43 H 1.08997 * 109.46669 * 300.00016 * 19 18 17 44 44 H 1.08001 * 120.00192 * 359.97438 * 21 20 19 45 45 H 1.07994 * 120.00689 * 179.72528 * 22 21 20 46 46 H 1.07990 * 120.00082 * 180.24048 * 23 22 21 47 47 H 1.08007 * 119.99673 * 179.72423 * 24 23 22 48 48 H 1.08002 * 120.00105 * 179.97438 * 25 24 23 49 49 H 1.08998 * 109.45709 * 58.27789 * 26 17 16 50 50 H 1.09003 * 109.45801 * 178.24625 * 26 17 16 51 51 H 1.09006 * 109.50447 * 299.23495 * 27 26 17 52 52 H 1.08998 * 109.50237 * 179.12135 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8801 1.3811 10 1 6.5003 2.2800 1.3810 11 1 6.3978 0.2167 2.6504 12 1 6.5967 0.1454 0.2343 13 7 1.6514 2.0994 -1.2552 14 6 1.5998 3.5583 -1.0918 15 6 1.8270 4.2334 -2.4473 16 6 1.7133 5.7504 -2.2817 17 7 0.3817 6.0891 -1.7631 18 6 0.1874 7.5445 -1.7218 19 6 -1.2799 7.8547 -1.4184 20 6 -1.4794 9.3479 -1.3767 21 6 -1.8134 10.0330 -2.5298 22 6 -1.9908 11.4034 -2.4928 23 6 -1.8446 12.0873 -1.3003 24 6 -1.5107 11.4021 -0.1471 25 6 -1.3280 10.0324 -0.1853 26 6 0.1590 5.4907 -0.4407 27 6 0.2263 3.9658 -0.5514 28 1 -0.3633 0.4411 0.9282 29 1 -0.3634 0.5833 -0.8460 30 1 -0.3634 -1.0243 -0.0821 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8293 -0.0612 2.9498 34 1 2.2739 1.8413 -2.0061 35 1 2.3745 3.8742 -0.3932 36 1 1.0752 3.8873 -3.1567 37 1 2.8207 3.9812 -2.8174 38 1 1.8603 6.2333 -3.2477 39 1 2.4742 6.0974 -1.5826 40 1 0.4577 7.9747 -2.6862 41 1 0.8180 7.9734 -0.9431 42 1 -1.5502 7.4246 -0.4540 43 1 -1.9104 7.4258 -2.1971 44 1 -1.9309 9.4983 -3.4608 45 1 -2.2473 11.9394 -3.3946 46 1 -1.9870 13.1574 -1.2706 47 1 -1.3921 11.9370 0.7837 48 1 -1.0668 9.4971 0.7156 49 1 0.9273 5.8390 0.2496 50 1 -0.8228 5.7849 -0.0697 51 1 -0.5507 3.6156 -1.2310 52 1 0.0765 3.5225 0.4330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183895.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:30 Heat of formation + Delta-G solvation = 7.795922 kcal Electronic energy + Delta-G solvation = -26402.735260 eV Core-core repulsion = 22979.705353 eV Total energy + Delta-G solvation = -3423.029907 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.66026 -38.81009 -36.25833 -34.24361 -32.60942 -31.44036 -31.11069 -30.55693 -29.78095 -27.75604 -25.97245 -23.83393 -23.06984 -22.77748 -22.50612 -21.52479 -20.66547 -19.38847 -19.11746 -17.03558 -16.55768 -16.02967 -15.60825 -15.21885 -14.85343 -14.73616 -14.44012 -14.28950 -13.69996 -13.63724 -13.51506 -13.16645 -13.15048 -12.93324 -12.73883 -12.61659 -12.01241 -11.96242 -11.63776 -11.46392 -11.31626 -11.17732 -11.13413 -11.10657 -10.88643 -10.82338 -10.67437 -10.61276 -10.23112 -10.11091 -9.77986 -9.53244 -9.37538 -9.14928 -8.99340 -8.89724 -8.35442 -8.20128 -7.20682 -5.98236 -4.11369 1.12728 1.17330 3.27224 3.32651 3.34889 3.53726 3.96875 4.39439 4.61522 4.69188 4.78628 4.90419 4.94375 5.06566 5.13143 5.23699 5.27596 5.28517 5.34023 5.35889 5.49318 5.56642 5.65029 5.72190 5.77031 5.79546 5.89263 5.93164 6.01595 6.08771 6.22733 6.25142 6.27794 6.28321 6.39070 6.42892 6.46124 6.52549 6.56374 6.71044 6.76797 6.78915 6.95780 7.16881 7.22020 7.23688 7.25871 7.49427 7.63415 7.80083 8.12590 8.20413 8.38265 8.71799 9.02548 9.56107 11.01342 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019532 B = 0.002403 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.219454 B =11649.611038 C =12091.898218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.032 0.968 5 C -0.544 4.544 6 H 0.051 0.949 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.684 5.684 14 C 0.093 3.907 15 C -0.115 4.115 16 C 0.062 3.938 17 N -0.536 5.536 18 C 0.063 3.937 19 C -0.080 4.080 20 C -0.076 4.076 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.129 4.129 24 C -0.119 4.119 25 C -0.117 4.117 26 C 0.054 3.946 27 C -0.099 4.099 28 H 0.034 0.966 29 H 0.051 0.949 30 H 0.023 0.977 31 H 0.029 0.971 32 H 0.089 0.911 33 H 0.261 0.739 34 H 0.327 0.673 35 H 0.042 0.958 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.030 0.970 40 H 0.072 0.928 41 H 0.031 0.969 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.121 0.879 49 H 0.029 0.971 50 H 0.072 0.928 51 H 0.070 0.930 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.939 18.966 -7.433 22.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.050 0.950 5 C -0.583 4.583 6 H 0.069 0.931 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.314 5.314 14 C -0.018 4.018 15 C -0.154 4.154 16 C -0.067 4.067 17 N -0.261 5.261 18 C -0.065 4.065 19 C -0.117 4.117 20 C -0.077 4.077 21 C -0.134 4.134 22 C -0.138 4.138 23 C -0.147 4.147 24 C -0.138 4.138 25 C -0.135 4.135 26 C -0.074 4.074 27 C -0.138 4.138 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.048 0.952 32 H 0.107 0.893 33 H 0.071 0.929 34 H 0.143 0.857 35 H 0.060 0.940 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.049 0.951 40 H 0.090 0.910 41 H 0.050 0.950 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.139 0.861 49 H 0.048 0.952 50 H 0.090 0.910 51 H 0.088 0.912 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.939 18.561 -7.450 22.796 hybrid contribution 2.741 0.604 0.855 2.934 sum -8.198 19.166 -6.595 21.864 Atomic orbital electron populations 1.21711 0.99009 0.98413 1.00387 1.21490 0.92121 0.99346 1.01528 1.19140 0.92496 0.91141 0.86391 0.95016 1.21851 0.92917 1.38123 1.05455 0.93079 1.24931 0.97778 0.95076 0.95750 1.69869 1.34821 1.38223 1.09410 0.86746 0.86271 0.78121 0.77364 1.20501 1.21242 1.20293 1.60897 1.56187 1.04837 1.09438 1.21324 0.95781 0.89871 0.94778 1.21759 1.01432 0.93416 0.98760 1.22028 0.88570 0.97025 0.99041 1.61956 1.29286 1.09122 1.25723 1.22017 0.95225 0.88387 1.00875 1.20646 0.97153 0.90504 1.03410 1.19950 0.98444 0.95928 0.93371 1.21102 1.00026 0.94298 0.98006 1.21152 1.00255 0.94480 0.97927 1.21136 1.00712 0.99790 0.93032 1.21155 0.99791 0.94460 0.98346 1.21118 1.00278 0.94389 0.97760 1.22189 1.00293 0.96195 0.88697 1.21542 0.98421 0.92269 1.01555 0.94640 0.93013 0.95774 0.95240 0.89302 0.92872 0.85673 0.93983 0.90855 0.92029 0.91295 0.95144 0.90983 0.95036 0.90719 0.89995 0.85964 0.86212 0.86341 0.86208 0.86116 0.95226 0.90995 0.91161 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.85 37.16 0.37 -2.48 16 2 C -0.11 -2.54 5.45 -26.73 -0.15 -2.69 16 3 C 0.22 5.27 1.80 -68.86 -0.12 5.15 16 4 H 0.03 0.86 7.20 -51.93 -0.37 0.49 16 5 C -0.54 -14.55 8.21 -34.44 -0.28 -14.83 16 6 H 0.05 1.36 7.76 -52.49 -0.41 0.95 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.95 11.30 55.43 0.63 -24.33 16 9 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.68 -14.07 5.43 -100.83 -0.55 -14.61 16 14 C 0.09 1.71 2.36 -67.60 -0.16 1.55 16 15 C -0.12 -1.76 5.35 -26.65 -0.14 -1.90 16 16 C 0.06 0.83 5.46 -3.83 -0.02 0.81 16 17 N -0.54 -7.01 4.66 -234.67 -1.09 -8.10 16 18 C 0.06 0.70 4.94 -3.82 -0.02 0.68 16 19 C -0.08 -0.79 5.27 -27.88 -0.15 -0.93 16 20 C -0.08 -0.74 5.13 -104.63 -0.54 -1.28 16 21 C -0.12 -1.05 9.70 -39.59 -0.38 -1.43 16 22 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 23 C -0.13 -1.05 10.05 -39.58 -0.40 -1.45 16 24 C -0.12 -1.03 10.05 -39.58 -0.40 -1.42 16 25 C -0.12 -1.11 9.70 -39.58 -0.38 -1.49 16 26 C 0.05 0.77 5.29 -3.84 -0.02 0.75 16 27 C -0.10 -1.66 5.58 -26.65 -0.15 -1.81 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 1.03 7.63 -51.93 -0.40 0.63 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 2.38 5.95 -51.93 -0.31 2.07 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.33 6.70 8.08 -39.29 -0.32 6.38 16 35 H 0.04 0.90 7.59 -51.93 -0.39 0.51 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.82 8.01 -51.93 -0.42 0.40 16 39 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.76 7.99 -51.93 -0.41 0.34 16 41 H 0.03 0.37 8.12 -51.93 -0.42 -0.06 16 42 H 0.07 0.75 6.37 -51.93 -0.33 0.42 16 43 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 44 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 45 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 46 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 47 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 48 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 49 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.07 0.91 6.21 -51.93 -0.32 0.58 16 51 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 52 H 0.06 1.19 7.51 -51.93 -0.39 0.80 16 LS Contribution 402.03 15.07 6.06 6.06 Total: -1.00 -27.75 402.03 -12.96 -40.71 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -9.55 Total: 6.61 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -3.44 Total: -22.45 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: -1.01 Total: -47.04 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -27.75 -12.96 -40.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183895.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.509 kcal (2) G-P(sol) polarization free energy of solvation -27.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds