Wall clock time and date at job start Tue Mar 31 2020 11:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.46972 * 2 1 4 4 H 1.08995 * 109.47394 * 55.00444 * 3 2 1 5 5 C 1.50706 * 109.47262 * 174.99997 * 3 2 1 6 6 H 1.08002 * 120.00139 * 119.99561 * 5 3 2 7 7 C 1.37877 * 119.99875 * 300.00514 * 5 3 2 8 8 N 1.31519 * 120.00066 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99876 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46738 * 60.00494 * 9 7 5 11 11 H 1.48508 * 109.46792 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47367 * 300.00012 * 9 7 5 13 13 N 1.46901 * 109.47874 * 294.99976 * 3 2 1 14 14 C 1.46890 * 111.00340 * 156.17868 * 13 3 2 15 15 C 1.53123 * 109.52543 * 154.54658 * 14 13 3 16 16 C 1.53030 * 109.28426 * 177.62491 * 15 14 13 17 17 N 1.46854 * 109.52339 * 300.82807 * 16 15 14 18 18 C 1.46896 * 110.99897 * 185.83720 * 17 16 15 19 19 C 1.53007 * 109.47024 * 169.99596 * 18 17 16 20 20 C 1.50700 * 109.46973 * 180.02562 * 19 18 17 21 21 C 1.38226 * 120.00265 * 90.00246 * 20 19 18 22 22 C 1.38237 * 120.00356 * 180.27741 * 21 20 19 23 23 C 1.38242 * 119.99718 * 359.48663 * 22 21 20 24 24 C 1.38235 * 119.99543 * 0.50832 * 23 22 21 25 25 C 1.38236 * 120.00356 * 359.75087 * 24 23 22 26 26 C 1.46847 * 111.19942 * 61.73635 * 17 16 15 27 27 C 1.53034 * 109.52252 * 298.26049 * 26 17 16 28 28 H 1.09005 * 109.46924 * 295.41814 * 1 2 3 29 29 H 1.08995 * 109.47664 * 55.41341 * 1 2 3 30 30 H 1.08998 * 109.47567 * 175.41884 * 1 2 3 31 31 H 1.09003 * 109.46794 * 240.00830 * 2 1 3 32 32 H 1.08995 * 109.47549 * 120.00492 * 2 1 3 33 33 H 0.96997 * 119.99782 * 179.97438 * 8 7 5 34 34 H 1.00900 * 110.99940 * 280.14311 * 13 3 2 35 35 H 1.09004 * 109.52184 * 34.42589 * 14 13 3 36 36 H 1.09005 * 109.49633 * 57.68390 * 15 14 13 37 37 H 1.08997 * 109.50322 * 297.57161 * 15 14 13 38 38 H 1.08993 * 109.46838 * 180.80920 * 16 15 14 39 39 H 1.09004 * 109.45471 * 60.82864 * 16 15 14 40 40 H 1.09003 * 109.47506 * 49.99840 * 18 17 16 41 41 H 1.09001 * 109.47291 * 289.99648 * 18 17 16 42 42 H 1.08996 * 109.47047 * 60.00076 * 19 18 17 43 43 H 1.08997 * 109.46669 * 300.00016 * 19 18 17 44 44 H 1.08001 * 120.00192 * 359.97438 * 21 20 19 45 45 H 1.07994 * 120.00689 * 179.72528 * 22 21 20 46 46 H 1.07990 * 120.00082 * 180.24048 * 23 22 21 47 47 H 1.08007 * 119.99673 * 179.72423 * 24 23 22 48 48 H 1.08002 * 120.00105 * 179.97438 * 25 24 23 49 49 H 1.08998 * 109.45709 * 58.27789 * 26 17 16 50 50 H 1.09003 * 109.45801 * 178.24625 * 26 17 16 51 51 H 1.09006 * 109.50447 * 299.23495 * 27 26 17 52 52 H 1.08998 * 109.50237 * 179.12135 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8801 1.3811 10 1 6.5003 2.2800 1.3810 11 1 6.3978 0.2167 2.6504 12 1 6.5967 0.1454 0.2343 13 7 1.6514 2.0994 -1.2552 14 6 1.5998 3.5583 -1.0918 15 6 1.8270 4.2334 -2.4473 16 6 1.7133 5.7504 -2.2817 17 7 0.3817 6.0891 -1.7631 18 6 0.1874 7.5445 -1.7218 19 6 -1.2799 7.8547 -1.4184 20 6 -1.4794 9.3479 -1.3767 21 6 -1.8134 10.0330 -2.5298 22 6 -1.9908 11.4034 -2.4928 23 6 -1.8446 12.0873 -1.3003 24 6 -1.5107 11.4021 -0.1471 25 6 -1.3280 10.0324 -0.1853 26 6 0.1590 5.4907 -0.4407 27 6 0.2263 3.9658 -0.5514 28 1 -0.3633 0.4411 0.9282 29 1 -0.3634 0.5833 -0.8460 30 1 -0.3634 -1.0243 -0.0821 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8293 -0.0612 2.9498 34 1 2.2739 1.8413 -2.0061 35 1 2.3745 3.8742 -0.3932 36 1 1.0752 3.8873 -3.1567 37 1 2.8207 3.9812 -2.8174 38 1 1.8603 6.2333 -3.2477 39 1 2.4742 6.0974 -1.5826 40 1 0.4577 7.9747 -2.6862 41 1 0.8180 7.9734 -0.9431 42 1 -1.5502 7.4246 -0.4540 43 1 -1.9104 7.4258 -2.1971 44 1 -1.9309 9.4983 -3.4608 45 1 -2.2473 11.9394 -3.3946 46 1 -1.9870 13.1574 -1.2706 47 1 -1.3921 11.9370 0.7837 48 1 -1.0668 9.4971 0.7156 49 1 0.9273 5.8390 0.2496 50 1 -0.8228 5.7849 -0.0697 51 1 -0.5507 3.6156 -1.2310 52 1 0.0765 3.5225 0.4330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183895.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:30 Heat of formation + Delta-G solvation = -6.009835 kcal Electronic energy + Delta-G solvation = -26403.333923 eV Core-core repulsion = 22979.705353 eV Total energy + Delta-G solvation = -3423.628569 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.51226 -39.86337 -37.85142 -35.56507 -34.03313 -33.13468 -31.80881 -31.72307 -31.16627 -28.91711 -27.70672 -25.14113 -24.54653 -23.82910 -23.41232 -22.68940 -21.49680 -21.25700 -20.50770 -18.62252 -17.70412 -17.08636 -16.79607 -16.42428 -16.10392 -15.87276 -15.68677 -15.45146 -15.31990 -14.83521 -14.69279 -14.30085 -14.27386 -14.02494 -13.93228 -13.66863 -13.45479 -13.20764 -13.11895 -13.05733 -12.90623 -12.61544 -12.52098 -12.34885 -12.09514 -12.08030 -11.94899 -11.84163 -11.69347 -11.60120 -11.50129 -11.24440 -11.09155 -10.84162 -10.44705 -9.79000 -9.58140 -9.28481 -9.02262 -8.05170 -6.27721 0.47332 0.53267 1.36657 1.37223 1.44730 2.38503 2.81363 3.00474 3.13549 3.61300 3.85469 3.92043 4.00218 4.07929 4.17260 4.23225 4.27469 4.33690 4.36702 4.40946 4.55538 4.62182 4.63436 4.66518 4.69381 4.72211 4.76613 4.79927 4.84792 4.89561 4.99130 5.00497 5.07277 5.10245 5.17221 5.21769 5.22706 5.28376 5.32615 5.44762 5.47043 5.55748 5.61367 5.66065 5.67789 5.77446 5.80649 6.10578 6.12468 6.17250 6.18220 6.23726 6.42951 6.86704 7.05071 7.43711 8.90480 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019532 B = 0.002403 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.219454 B =11649.611038 C =12091.898218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C 0.226 3.774 4 H -0.003 1.003 5 C -0.558 4.558 6 H 0.047 0.953 7 C 0.019 3.981 8 N -0.911 5.911 9 Si 0.948 3.052 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.271 1.271 13 N -0.675 5.675 14 C 0.093 3.907 15 C -0.106 4.106 16 C 0.064 3.936 17 N -0.535 5.535 18 C 0.067 3.933 19 C -0.071 4.071 20 C -0.089 4.089 21 C -0.126 4.126 22 C -0.126 4.126 23 C -0.134 4.134 24 C -0.129 4.129 25 C -0.134 4.134 26 C 0.063 3.937 27 C -0.091 4.091 28 H 0.028 0.972 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.027 0.973 32 H 0.059 0.941 33 H 0.261 0.739 34 H 0.328 0.672 35 H 0.005 0.995 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.094 0.906 39 H 0.020 0.980 40 H 0.083 0.917 41 H 0.025 0.975 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.133 0.867 45 H 0.140 0.860 46 H 0.139 0.861 47 H 0.135 0.865 48 H 0.122 0.878 49 H 0.016 0.984 50 H 0.090 0.910 51 H 0.073 0.927 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.352 20.542 -9.055 24.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.142 4.142 3 C 0.117 3.883 4 H 0.015 0.985 5 C -0.597 4.597 6 H 0.066 0.934 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.774 3.226 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.196 1.196 13 N -0.303 5.303 14 C -0.017 4.017 15 C -0.144 4.144 16 C -0.064 4.064 17 N -0.260 5.260 18 C -0.060 4.060 19 C -0.108 4.108 20 C -0.090 4.090 21 C -0.144 4.144 22 C -0.144 4.144 23 C -0.152 4.152 24 C -0.147 4.147 25 C -0.152 4.152 26 C -0.066 4.066 27 C -0.130 4.130 28 H 0.047 0.953 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.145 0.855 35 H 0.023 0.977 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.112 0.888 39 H 0.038 0.962 40 H 0.101 0.899 41 H 0.043 0.957 42 H 0.088 0.912 43 H 0.102 0.898 44 H 0.151 0.849 45 H 0.158 0.842 46 H 0.157 0.843 47 H 0.153 0.847 48 H 0.140 0.860 49 H 0.035 0.965 50 H 0.108 0.892 51 H 0.092 0.908 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.358 20.150 -9.086 24.851 hybrid contribution 2.844 0.169 1.357 3.156 sum -8.514 20.318 -7.730 23.347 Atomic orbital electron populations 1.21562 0.96394 0.99878 1.00389 1.21358 0.94445 0.98482 0.99890 1.18873 0.91204 0.91365 0.86827 0.98479 1.22163 0.94264 1.37864 1.05454 0.93432 1.25664 1.01985 0.94896 0.95564 1.70003 1.36378 1.38816 1.09769 0.85776 0.81253 0.78105 0.77478 1.20244 1.20875 1.19595 1.60858 1.55565 1.06193 1.07724 1.21377 0.95632 0.88609 0.96118 1.21664 1.01727 0.94491 0.96503 1.22023 0.88574 0.95705 1.00109 1.61973 1.28873 1.10544 1.24619 1.22038 0.95991 0.86723 1.01255 1.20537 0.96207 0.90939 1.03162 1.19977 0.99425 0.95706 0.93880 1.21313 0.99963 0.94884 0.98196 1.21463 0.99664 0.94398 0.98858 1.21463 0.99948 1.00971 0.92806 1.21417 0.99604 0.94308 0.99387 1.21278 1.00893 0.95075 0.97925 1.22068 1.00926 0.94254 0.89335 1.21427 0.97312 0.94190 1.00061 0.95288 0.92140 0.93668 0.95389 0.92273 0.92937 0.85506 0.97652 0.90169 0.91856 0.88758 0.96202 0.89885 0.95693 0.91168 0.89788 0.84885 0.84183 0.84293 0.84748 0.86038 0.96537 0.89187 0.90828 0.94100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.12 9.85 71.98 0.71 -4.41 16 2 C -0.10 -5.02 5.45 30.59 0.17 -4.85 16 3 C 0.23 11.37 1.80 44.17 0.08 11.45 16 4 H 0.00 -0.16 7.20 -2.39 -0.02 -0.17 16 5 C -0.56 -30.55 8.21 25.60 0.21 -30.34 16 6 H 0.05 2.57 7.76 -2.91 -0.02 2.55 16 7 C 0.02 1.04 5.29 84.65 0.45 1.49 16 8 N -0.91 -52.65 11.30 21.45 0.24 -52.41 16 9 Si 0.95 43.82 29.54 68.60 2.03 45.84 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 13 N -0.67 -28.10 5.43 -472.92 -2.57 -30.67 16 14 C 0.09 3.47 2.36 45.00 0.11 3.58 16 15 C -0.11 -3.12 5.35 30.65 0.16 -2.96 16 16 C 0.06 1.64 5.46 86.32 0.47 2.11 16 17 N -0.54 -13.24 4.66 -896.35 -4.17 -17.42 16 18 C 0.07 1.38 4.94 86.31 0.43 1.81 16 19 C -0.07 -1.30 5.27 29.85 0.16 -1.15 16 20 C -0.09 -1.62 5.13 -19.87 -0.10 -1.72 16 21 C -0.13 -2.03 9.70 22.27 0.22 -1.82 16 22 C -0.13 -1.80 10.05 22.27 0.22 -1.58 16 23 C -0.13 -1.91 10.05 22.27 0.22 -1.68 16 24 C -0.13 -2.04 10.05 22.27 0.22 -1.82 16 25 C -0.13 -2.41 9.70 22.27 0.22 -2.20 16 26 C 0.06 1.75 5.29 86.32 0.46 2.20 16 27 C -0.09 -3.09 5.58 30.64 0.17 -2.92 16 28 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 29 H 0.06 2.35 7.63 -2.39 -0.02 2.34 16 30 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 3.25 5.95 -2.39 -0.01 3.24 16 33 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 34 H 0.33 13.47 8.08 -89.69 -0.72 12.75 16 35 H 0.01 0.24 7.59 -2.39 -0.02 0.22 16 36 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 37 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.09 1.98 8.01 -2.39 -0.02 1.96 16 39 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.08 1.55 7.99 -2.39 -0.02 1.53 16 41 H 0.02 0.55 8.12 -2.39 -0.02 0.53 16 42 H 0.07 1.34 6.37 -2.39 -0.02 1.32 16 43 H 0.08 1.51 8.08 -2.39 -0.02 1.49 16 44 H 0.13 1.77 8.06 -2.91 -0.02 1.75 16 45 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 46 H 0.14 1.33 8.06 -2.92 -0.02 1.30 16 47 H 0.13 1.61 8.06 -2.91 -0.02 1.59 16 48 H 0.12 2.06 8.06 -2.91 -0.02 2.03 16 49 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 50 H 0.09 2.20 6.21 -2.39 -0.01 2.18 16 51 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 52 H 0.04 1.56 7.51 -2.39 -0.02 1.54 16 Total: -1.00 -60.39 402.03 0.23 -60.16 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: 0.14 Total: 29.29 kcal Atomic # 6 Polarization: -39.37 SS G_CDS: 4.57 Total: -34.80 kcal Atomic # 7 Polarization: -94.00 SS G_CDS: -6.50 Total: -100.50 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -60.39 0.23 -60.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183895.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.152 kcal (2) G-P(sol) polarization free energy of solvation -60.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds