Wall clock time and date at job start Tue Mar 31 2020 11:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47323 * 2 1 4 4 C 1.53001 * 109.47152 * 120.00440 * 2 1 3 5 5 C 1.52997 * 109.47152 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47091 * 299.99714 * 5 4 2 7 7 C 1.53000 * 109.47255 * 60.00064 * 6 5 4 8 8 C 1.52997 * 109.47019 * 299.99980 * 7 6 5 9 9 H 1.08996 * 109.47323 * 300.00073 * 8 7 6 10 10 N 1.46900 * 109.47214 * 179.97438 * 8 7 6 11 11 C 1.46904 * 110.99765 * 84.99937 * 10 8 7 12 12 C 1.50699 * 109.47063 * 180.02562 * 11 10 8 13 13 C 1.38287 * 119.92650 * 90.00091 * 12 11 10 14 14 C 1.38101 * 120.07446 * 180.02562 * 13 12 11 15 15 C 1.38904 * 119.92852 * 0.02562 * 14 13 12 16 16 N 1.39675 * 120.07877 * 179.97438 * 15 14 13 17 17 C 1.46497 * 119.99650 * 359.97438 * 16 15 14 18 18 C 1.46493 * 120.00115 * 179.97438 * 16 15 14 19 19 C 1.50706 * 109.47128 * 90.00055 * 18 16 15 20 20 H 1.08005 * 119.99758 * 359.97438 * 19 18 16 21 21 C 1.37871 * 120.00102 * 179.97438 * 19 18 16 22 22 N 1.31516 * 120.00217 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47483 * 269.99808 * 23 21 19 25 25 H 1.48499 * 109.47134 * 30.00322 * 23 21 19 26 26 H 1.48507 * 109.46904 * 150.00145 * 23 21 19 27 27 C 1.38914 * 119.85064 * 0.25062 * 15 14 13 28 28 C 1.38110 * 119.92113 * 359.49693 * 27 15 14 29 29 H 1.09002 * 109.46992 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47314 * 299.99482 * 1 2 3 31 31 H 1.08995 * 109.47194 * 59.99893 * 1 2 3 32 32 H 1.09002 * 109.47074 * 300.00225 * 4 2 1 33 33 H 1.08996 * 109.47366 * 59.99586 * 4 2 1 34 34 H 1.09002 * 109.46992 * 59.99812 * 5 4 2 35 35 H 1.09004 * 109.46929 * 179.97438 * 5 4 2 36 36 H 1.09002 * 109.47013 * 180.02562 * 6 5 4 37 37 H 1.09002 * 109.47282 * 299.99920 * 6 5 4 38 38 H 1.08997 * 109.47049 * 179.97438 * 7 6 5 39 39 H 1.09002 * 109.47093 * 59.99739 * 7 6 5 40 40 H 1.00896 * 110.99769 * 321.04803 * 10 8 7 41 41 H 1.08995 * 109.46848 * 60.00121 * 11 10 8 42 42 H 1.08999 * 109.46756 * 300.00138 * 11 10 8 43 43 H 1.07997 * 119.96070 * 359.97438 * 13 12 11 44 44 H 1.07999 * 120.03380 * 180.02562 * 14 13 12 45 45 H 1.09009 * 109.46709 * 270.00054 * 17 16 15 46 46 H 1.08998 * 109.47569 * 29.99690 * 17 16 15 47 47 H 1.08997 * 109.47185 * 150.00361 * 17 16 15 48 48 H 1.09001 * 109.47786 * 330.00328 * 18 16 15 49 49 H 1.09006 * 109.47401 * 209.99913 * 18 16 15 50 50 H 0.97001 * 119.99646 * 359.97438 * 22 21 19 51 51 H 1.07998 * 120.04279 * 179.73067 * 27 15 14 52 52 H 1.08001 * 119.96131 * 180.25131 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5700 -0.7208 1.2495 6 6 4.0805 -1.4416 0.0003 7 6 3.5705 -0.7204 -1.2490 8 6 2.0405 -0.7209 -1.2493 9 1 1.6775 -1.7487 -1.2495 10 7 1.5508 -0.0279 -2.4484 11 6 1.4886 -0.9423 -3.5964 12 6 0.9838 -0.1974 -4.8052 13 6 1.8784 0.4332 -5.6503 14 6 1.4190 1.1172 -6.7587 15 6 0.0566 1.1717 -7.0239 16 7 -0.4115 1.8630 -8.1436 17 6 0.5348 2.5321 -9.0397 18 6 -1.8486 1.9189 -8.4220 19 6 -2.4456 3.1240 -7.7418 20 1 -1.8172 3.7821 -7.1600 21 6 -3.7937 3.3863 -7.8623 22 7 -4.5590 2.5847 -8.5704 23 14 -4.5337 4.8797 -7.0186 24 1 -4.9817 4.5055 -5.6531 25 1 -3.5121 5.9536 -6.9275 26 1 -5.6956 5.3671 -7.8045 27 6 -0.8398 0.5419 -6.1697 28 6 -0.3733 -0.1448 -5.0660 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6766 -0.2076 2.1392 33 1 1.6766 -1.7490 1.2492 34 1 3.9329 0.3070 1.2498 35 1 3.9333 -1.2343 2.1397 36 1 5.1705 -1.4416 0.0007 37 1 3.7175 -2.4694 0.0000 38 1 3.9346 -1.2336 -2.1389 39 1 3.9334 0.3075 -1.2487 40 1 2.1207 0.7778 -2.6584 41 1 0.8125 -1.7663 -3.3683 42 1 2.4842 -1.3355 -3.8020 43 1 2.9374 0.3915 -5.4429 44 1 2.1183 1.6091 -7.4185 45 1 0.6942 3.5559 -8.7008 46 1 1.4835 1.9954 -9.0328 47 1 0.1309 2.5433 -10.0520 48 1 -2.3272 1.0149 -8.0453 49 1 -2.0078 1.9930 -9.4979 50 1 -4.1747 1.8090 -9.0082 51 1 -1.9000 0.5860 -6.3706 52 1 -1.0693 -0.6380 -4.4037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072659598.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:00 Heat of formation + Delta-G solvation = 1.093345 kcal Electronic energy + Delta-G solvation = -26367.548796 eV Core-core repulsion = 22944.228244 eV Total energy + Delta-G solvation = -3423.320552 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.54861 -38.90277 -36.28198 -34.59633 -32.93189 -32.65363 -30.65848 -30.45412 -28.53292 -27.53651 -26.29993 -25.22167 -23.82051 -22.51934 -21.90842 -21.63161 -21.25564 -20.16516 -19.58213 -17.11808 -16.60666 -15.93146 -15.44974 -15.06425 -14.78800 -14.56564 -14.34789 -14.16452 -13.92227 -13.78089 -13.75880 -13.35221 -13.10319 -12.95002 -12.81582 -12.38804 -12.31648 -12.10083 -11.94062 -11.78472 -11.53814 -11.49227 -11.34574 -11.30890 -11.10309 -11.02262 -10.77145 -10.62990 -10.61694 -10.50318 -10.18604 -10.15649 -10.00197 -9.52063 -8.60696 -8.44379 -8.32403 -8.24110 -6.60428 -6.25841 -4.17601 2.06492 2.17168 3.42017 3.44161 3.60314 4.04967 4.13498 4.44039 4.49121 4.54028 4.56815 4.80227 4.92008 4.96298 5.20868 5.22714 5.24186 5.28083 5.28599 5.33726 5.36413 5.50840 5.52902 5.57415 5.65387 5.70657 5.77774 5.79160 5.81530 5.86823 5.88208 5.94690 5.98245 6.03503 6.05377 6.13401 6.22066 6.31101 6.32847 6.36851 6.47203 6.56608 6.80585 6.86309 7.01007 7.09349 7.11792 7.28794 7.46826 7.54169 7.97800 8.03922 8.35992 8.51367 8.75490 9.52777 10.92437 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015668 B = 0.002719 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.685850 B =10296.266398 C =11490.120656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.078 4.078 3 H 0.067 0.933 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.115 4.115 7 C -0.150 4.150 8 C 0.092 3.908 9 H 0.074 0.926 10 N -0.677 5.677 11 C 0.117 3.883 12 C -0.169 4.169 13 C -0.068 4.068 14 C -0.221 4.221 15 C 0.241 3.759 16 N -0.613 5.613 17 C 0.102 3.898 18 C 0.240 3.760 19 C -0.609 4.609 20 H 0.053 0.947 21 C 0.020 3.980 22 N -0.910 5.910 23 Si 1.072 2.928 24 H -0.286 1.286 25 H -0.289 1.289 26 H -0.284 1.284 27 C -0.188 4.188 28 C -0.050 4.050 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.340 0.660 41 H 0.070 0.930 42 H 0.027 0.973 43 H 0.105 0.895 44 H 0.112 0.888 45 H 0.041 0.959 46 H 0.054 0.946 47 H 0.059 0.941 48 H 0.025 0.975 49 H 0.019 0.981 50 H 0.267 0.733 51 H 0.128 0.872 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.606 -8.038 14.851 23.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.097 4.097 3 H 0.085 0.915 4 C -0.153 4.153 5 C -0.158 4.158 6 C -0.153 4.153 7 C -0.189 4.189 8 C -0.018 4.018 9 H 0.092 0.908 10 N -0.306 5.306 11 C -0.011 4.011 12 C -0.172 4.172 13 C -0.087 4.087 14 C -0.244 4.244 15 C 0.134 3.866 16 N -0.319 5.319 17 C -0.042 4.042 18 C 0.119 3.881 19 C -0.648 4.648 20 H 0.072 0.928 21 C -0.184 4.184 22 N -0.546 5.546 23 Si 0.900 3.100 24 H -0.212 1.212 25 H -0.215 1.215 26 H -0.209 1.209 27 C -0.210 4.210 28 C -0.069 4.069 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.159 0.841 41 H 0.088 0.912 42 H 0.045 0.955 43 H 0.123 0.877 44 H 0.130 0.870 45 H 0.060 0.940 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.043 0.957 49 H 0.037 0.963 50 H 0.077 0.923 51 H 0.146 0.854 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 14.411 -7.175 15.021 22.018 hybrid contribution 2.444 -0.753 -0.532 2.612 sum 16.856 -7.928 14.489 23.599 Atomic orbital electron populations 1.21701 0.94506 1.01396 1.01995 1.21062 0.96367 0.99228 0.93015 0.91482 1.21621 0.95079 1.00764 0.97841 1.21546 0.96049 1.00652 0.97519 1.21463 0.99931 0.99353 0.94547 1.22292 0.97592 1.00960 0.98037 1.21622 0.91521 0.97944 0.90696 0.90777 1.60638 1.57139 1.09563 1.03287 1.20659 0.98328 0.94087 0.88071 1.19207 0.93641 1.06230 0.98155 1.20505 0.97845 0.96339 0.94040 1.20506 0.93665 1.08729 1.01467 1.17927 0.92133 0.89532 0.87008 1.46849 1.07479 1.53560 1.23974 1.21449 0.92560 0.96563 0.93676 1.19357 0.75389 0.97474 0.95845 1.22402 0.96124 1.11369 1.34896 0.92837 1.25826 0.93754 1.02513 0.96341 1.70801 1.38572 1.14740 1.30508 0.83494 0.75598 0.74798 0.76120 1.21235 1.21510 1.20943 1.20860 0.99949 1.03370 0.96867 1.20640 0.94342 0.96600 0.95355 0.93510 0.93763 0.90828 0.91996 0.92108 0.92097 0.92277 0.92342 0.92103 0.92207 0.91875 0.84113 0.91168 0.95521 0.87718 0.86976 0.94014 0.92713 0.92187 0.95703 0.96333 0.92257 0.85412 0.86980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.04 37.16 0.34 -1.10 16 2 C -0.08 -0.72 2.43 -90.62 -0.22 -0.94 16 3 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 4 C -0.12 -0.90 5.20 -26.73 -0.14 -1.04 16 5 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 6 C -0.11 -0.85 5.92 -26.73 -0.16 -1.01 16 7 C -0.15 -1.26 5.17 -26.73 -0.14 -1.40 16 8 C 0.09 0.88 1.91 -67.71 -0.13 0.75 16 9 H 0.07 0.75 7.80 -51.93 -0.41 0.34 16 10 N -0.68 -7.76 5.47 -107.99 -0.59 -8.35 16 11 C 0.12 1.43 5.61 -4.97 -0.03 1.40 16 12 C -0.17 -2.59 5.39 -104.59 -0.56 -3.15 16 13 C -0.07 -1.04 9.69 -39.61 -0.38 -1.43 16 14 C -0.22 -3.85 9.21 -39.38 -0.36 -4.21 16 15 C 0.24 4.93 6.55 -83.79 -0.55 4.39 16 16 N -0.61 -13.35 2.99 -181.00 -0.54 -13.89 16 17 C 0.10 1.82 10.23 59.85 0.61 2.43 16 18 C 0.24 6.04 4.26 -5.19 -0.02 6.02 16 19 C -0.61 -17.02 9.39 -34.44 -0.32 -17.34 16 20 H 0.05 1.55 7.81 -52.48 -0.41 1.14 16 21 C 0.02 0.56 5.46 -17.82 -0.10 0.47 16 22 N -0.91 -27.02 13.65 55.43 0.76 -26.26 16 23 Si 1.07 25.33 29.90 -169.99 -5.08 20.25 16 24 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 C -0.19 -3.86 9.20 -39.38 -0.36 -4.22 16 28 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.91 7.60 -51.93 -0.39 0.51 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.52 7.45 -51.93 -0.39 0.13 16 39 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 40 H 0.34 3.95 8.46 -39.29 -0.33 3.62 16 41 H 0.07 0.85 8.00 -51.93 -0.42 0.44 16 42 H 0.03 0.30 7.38 -51.93 -0.38 -0.08 16 43 H 0.10 1.34 8.06 -52.49 -0.42 0.91 16 44 H 0.11 1.77 6.14 -52.49 -0.32 1.45 16 45 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 46 H 0.05 0.83 6.20 -51.93 -0.32 0.50 16 47 H 0.06 1.03 7.89 -51.93 -0.41 0.62 16 48 H 0.03 0.66 6.08 -51.93 -0.32 0.34 16 49 H 0.02 0.49 7.76 -51.93 -0.40 0.08 16 50 H 0.27 7.84 7.22 -40.82 -0.29 7.54 16 51 H 0.13 2.91 6.15 -52.49 -0.32 2.59 16 52 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 401.24 15.07 6.05 6.05 Total: -1.00 -29.21 401.24 -11.89 -41.10 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -9.41 Total: 3.76 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: -3.07 Total: -22.66 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: -0.38 Total: -48.50 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.08 Total: 20.25 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.21 -11.89 -41.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072659598.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.196 kcal (2) G-P(sol) polarization free energy of solvation -29.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds