Wall clock time and date at job start Tue Mar 31 2020 11:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47323 * 2 1 4 4 C 1.53001 * 109.47152 * 120.00440 * 2 1 3 5 5 C 1.52997 * 109.47152 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47091 * 299.99714 * 5 4 2 7 7 C 1.53000 * 109.47255 * 60.00064 * 6 5 4 8 8 C 1.52997 * 109.47019 * 299.99980 * 7 6 5 9 9 H 1.08996 * 109.47323 * 300.00073 * 8 7 6 10 10 N 1.46900 * 109.47214 * 179.97438 * 8 7 6 11 11 C 1.46904 * 110.99765 * 84.99937 * 10 8 7 12 12 C 1.50699 * 109.47063 * 180.02562 * 11 10 8 13 13 C 1.38287 * 119.92650 * 90.00091 * 12 11 10 14 14 C 1.38101 * 120.07446 * 180.02562 * 13 12 11 15 15 C 1.38904 * 119.92852 * 0.02562 * 14 13 12 16 16 N 1.39675 * 120.07877 * 179.97438 * 15 14 13 17 17 C 1.46497 * 119.99650 * 359.97438 * 16 15 14 18 18 C 1.46493 * 120.00115 * 179.97438 * 16 15 14 19 19 C 1.50706 * 109.47128 * 90.00055 * 18 16 15 20 20 H 1.08005 * 119.99758 * 359.97438 * 19 18 16 21 21 C 1.37871 * 120.00102 * 179.97438 * 19 18 16 22 22 N 1.31516 * 120.00217 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47483 * 269.99808 * 23 21 19 25 25 H 1.48499 * 109.47134 * 30.00322 * 23 21 19 26 26 H 1.48507 * 109.46904 * 150.00145 * 23 21 19 27 27 C 1.38914 * 119.85064 * 0.25062 * 15 14 13 28 28 C 1.38110 * 119.92113 * 359.49693 * 27 15 14 29 29 H 1.09002 * 109.46992 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47314 * 299.99482 * 1 2 3 31 31 H 1.08995 * 109.47194 * 59.99893 * 1 2 3 32 32 H 1.09002 * 109.47074 * 300.00225 * 4 2 1 33 33 H 1.08996 * 109.47366 * 59.99586 * 4 2 1 34 34 H 1.09002 * 109.46992 * 59.99812 * 5 4 2 35 35 H 1.09004 * 109.46929 * 179.97438 * 5 4 2 36 36 H 1.09002 * 109.47013 * 180.02562 * 6 5 4 37 37 H 1.09002 * 109.47282 * 299.99920 * 6 5 4 38 38 H 1.08997 * 109.47049 * 179.97438 * 7 6 5 39 39 H 1.09002 * 109.47093 * 59.99739 * 7 6 5 40 40 H 1.00896 * 110.99769 * 321.04803 * 10 8 7 41 41 H 1.08995 * 109.46848 * 60.00121 * 11 10 8 42 42 H 1.08999 * 109.46756 * 300.00138 * 11 10 8 43 43 H 1.07997 * 119.96070 * 359.97438 * 13 12 11 44 44 H 1.07999 * 120.03380 * 180.02562 * 14 13 12 45 45 H 1.09009 * 109.46709 * 270.00054 * 17 16 15 46 46 H 1.08998 * 109.47569 * 29.99690 * 17 16 15 47 47 H 1.08997 * 109.47185 * 150.00361 * 17 16 15 48 48 H 1.09001 * 109.47786 * 330.00328 * 18 16 15 49 49 H 1.09006 * 109.47401 * 209.99913 * 18 16 15 50 50 H 0.97001 * 119.99646 * 359.97438 * 22 21 19 51 51 H 1.07998 * 120.04279 * 179.73067 * 27 15 14 52 52 H 1.08001 * 119.96131 * 180.25131 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5700 -0.7208 1.2495 6 6 4.0805 -1.4416 0.0003 7 6 3.5705 -0.7204 -1.2490 8 6 2.0405 -0.7209 -1.2493 9 1 1.6775 -1.7487 -1.2495 10 7 1.5508 -0.0279 -2.4484 11 6 1.4886 -0.9423 -3.5964 12 6 0.9838 -0.1974 -4.8052 13 6 1.8784 0.4332 -5.6503 14 6 1.4190 1.1172 -6.7587 15 6 0.0566 1.1717 -7.0239 16 7 -0.4115 1.8630 -8.1436 17 6 0.5348 2.5321 -9.0397 18 6 -1.8486 1.9189 -8.4220 19 6 -2.4456 3.1240 -7.7418 20 1 -1.8172 3.7821 -7.1600 21 6 -3.7937 3.3863 -7.8623 22 7 -4.5590 2.5847 -8.5704 23 14 -4.5337 4.8797 -7.0186 24 1 -4.9817 4.5055 -5.6531 25 1 -3.5121 5.9536 -6.9275 26 1 -5.6956 5.3671 -7.8045 27 6 -0.8398 0.5419 -6.1697 28 6 -0.3733 -0.1448 -5.0660 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6766 -0.2076 2.1392 33 1 1.6766 -1.7490 1.2492 34 1 3.9329 0.3070 1.2498 35 1 3.9333 -1.2343 2.1397 36 1 5.1705 -1.4416 0.0007 37 1 3.7175 -2.4694 0.0000 38 1 3.9346 -1.2336 -2.1389 39 1 3.9334 0.3075 -1.2487 40 1 2.1207 0.7778 -2.6584 41 1 0.8125 -1.7663 -3.3683 42 1 2.4842 -1.3355 -3.8020 43 1 2.9374 0.3915 -5.4429 44 1 2.1183 1.6091 -7.4185 45 1 0.6942 3.5559 -8.7008 46 1 1.4835 1.9954 -9.0328 47 1 0.1309 2.5433 -10.0520 48 1 -2.3272 1.0149 -8.0453 49 1 -2.0078 1.9930 -9.4979 50 1 -4.1747 1.8090 -9.0082 51 1 -1.9000 0.5860 -6.3706 52 1 -1.0693 -0.6380 -4.4037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072659598.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:59 Heat of formation + Delta-G solvation = -12.888708 kcal Electronic energy + Delta-G solvation = -26368.155103 eV Core-core repulsion = 22944.228244 eV Total energy + Delta-G solvation = -3423.926860 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.63679 -39.98888 -37.71733 -35.74890 -34.86612 -33.37952 -31.92096 -31.75343 -29.57128 -29.31160 -27.30562 -26.46304 -25.44831 -23.89374 -23.13649 -22.77077 -21.92137 -21.29155 -20.61761 -19.13379 -18.16785 -16.92524 -16.72935 -16.14399 -15.81449 -15.71762 -15.67640 -15.46057 -15.17759 -15.01341 -14.84577 -14.56606 -14.40937 -14.12658 -14.06663 -13.67298 -13.35035 -13.20197 -13.19912 -13.10604 -13.01449 -12.73931 -12.68097 -12.50001 -12.29965 -12.03091 -12.00442 -11.97660 -11.69035 -11.52694 -11.34216 -11.30811 -11.17599 -10.91872 -10.62849 -10.35483 -9.72579 -9.12587 -8.78705 -7.93563 -6.46116 0.65094 0.77950 1.48513 1.56373 1.74939 2.43511 2.54546 2.96954 3.07916 3.48408 3.76352 3.88982 3.99395 4.09382 4.14084 4.15092 4.27183 4.30011 4.33134 4.42653 4.54402 4.56300 4.59799 4.62768 4.65686 4.66747 4.72331 4.75059 4.79326 4.83502 4.87951 4.94307 5.00058 5.03336 5.10459 5.14588 5.20100 5.23950 5.24966 5.33921 5.38645 5.45631 5.54794 5.57282 5.59802 5.63190 5.82378 5.89116 5.98234 6.15419 6.27431 6.42114 6.57456 6.61222 6.82657 7.32951 8.64739 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015668 B = 0.002719 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.685850 B =10296.266398 C =11490.120656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.075 4.075 3 H 0.061 0.939 4 C -0.112 4.112 5 C -0.118 4.118 6 C -0.113 4.113 7 C -0.144 4.144 8 C 0.096 3.904 9 H 0.071 0.929 10 N -0.687 5.687 11 C 0.123 3.877 12 C -0.154 4.154 13 C -0.060 4.060 14 C -0.215 4.215 15 C 0.210 3.790 16 N -0.630 5.630 17 C 0.101 3.899 18 C 0.254 3.746 19 C -0.614 4.614 20 H 0.039 0.961 21 C -0.028 4.028 22 N -0.931 5.931 23 Si 1.116 2.884 24 H -0.275 1.275 25 H -0.274 1.274 26 H -0.277 1.277 27 C -0.217 4.217 28 C -0.055 4.055 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.341 0.659 41 H 0.071 0.929 42 H 0.047 0.953 43 H 0.144 0.856 44 H 0.133 0.867 45 H 0.038 0.962 46 H 0.087 0.913 47 H 0.060 0.940 48 H 0.005 0.995 49 H 0.005 0.995 50 H 0.256 0.744 51 H 0.089 0.911 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.490 -8.214 16.814 27.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.094 4.094 3 H 0.079 0.921 4 C -0.150 4.150 5 C -0.156 4.156 6 C -0.151 4.151 7 C -0.183 4.183 8 C -0.013 4.013 9 H 0.089 0.911 10 N -0.317 5.317 11 C -0.005 4.005 12 C -0.156 4.156 13 C -0.079 4.079 14 C -0.238 4.238 15 C 0.105 3.895 16 N -0.338 5.338 17 C -0.042 4.042 18 C 0.131 3.869 19 C -0.653 4.653 20 H 0.057 0.943 21 C -0.227 4.227 22 N -0.568 5.568 23 Si 0.938 3.062 24 H -0.201 1.201 25 H -0.200 1.200 26 H -0.202 1.202 27 C -0.240 4.240 28 C -0.075 4.075 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.160 0.840 41 H 0.089 0.911 42 H 0.065 0.935 43 H 0.162 0.838 44 H 0.151 0.849 45 H 0.056 0.944 46 H 0.106 0.894 47 H 0.079 0.921 48 H 0.022 0.978 49 H 0.023 0.977 50 H 0.066 0.934 51 H 0.107 0.893 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 17.342 -7.377 17.000 25.380 hybrid contribution 1.631 -0.793 -1.042 2.092 sum 18.973 -8.170 15.958 26.103 Atomic orbital electron populations 1.21657 0.95505 1.01091 1.01068 1.21039 0.95437 0.99138 0.93810 0.92098 1.21585 0.95726 1.00596 0.97056 1.21536 0.95296 1.00764 0.97981 1.21460 1.00454 0.99251 0.93984 1.22223 0.96298 1.01113 0.98684 1.21603 0.92518 0.97442 0.89765 0.91060 1.60578 1.57878 1.09711 1.03541 1.20596 0.99227 0.93683 0.86975 1.19561 0.92508 1.04735 0.98817 1.20930 0.99776 0.94550 0.92612 1.20784 0.92300 1.08390 1.02277 1.18218 0.93609 0.90571 0.87060 1.46750 1.06257 1.55241 1.25560 1.21590 0.93145 0.96513 0.92963 1.18905 0.78079 0.95561 0.94319 1.22612 0.96290 1.11835 1.34552 0.94276 1.27242 0.94599 1.04543 0.96274 1.70910 1.38811 1.15195 1.31923 0.82931 0.75476 0.72129 0.75663 1.20083 1.19956 1.20214 1.20739 0.98318 1.05954 0.99007 1.20779 0.95939 0.96276 0.94457 0.93477 0.93241 0.93179 0.91626 0.91965 0.92205 0.91215 0.91487 0.91937 0.92057 0.91947 0.84049 0.91081 0.93462 0.83799 0.84892 0.94387 0.89433 0.92104 0.97763 0.97716 0.93409 0.89302 0.86276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.04 71.98 0.65 -2.04 16 2 C -0.08 -1.27 2.43 -10.79 -0.03 -1.30 16 3 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 4 C -0.11 -1.51 5.20 30.59 0.16 -1.35 16 5 C -0.12 -1.38 5.92 30.59 0.18 -1.20 16 6 C -0.11 -1.33 5.92 30.59 0.18 -1.15 16 7 C -0.14 -1.99 5.17 30.59 0.16 -1.83 16 8 C 0.10 1.62 1.91 44.92 0.09 1.71 16 9 H 0.07 1.27 7.80 -2.39 -0.02 1.25 16 10 N -0.69 -14.24 5.47 -495.58 -2.71 -16.95 16 11 C 0.12 2.67 5.61 85.56 0.48 3.15 16 12 C -0.15 -4.37 5.39 -19.84 -0.11 -4.48 16 13 C -0.06 -1.64 9.69 22.25 0.22 -1.42 16 14 C -0.21 -7.06 9.21 22.40 0.21 -6.86 16 15 C 0.21 8.72 6.55 38.21 0.25 8.97 16 16 N -0.63 -28.23 2.99 -726.56 -2.17 -30.40 16 17 C 0.10 3.57 10.23 127.77 1.31 4.88 16 18 C 0.25 13.53 4.26 85.64 0.36 13.89 16 19 C -0.61 -35.68 9.39 25.60 0.24 -35.44 16 20 H 0.04 2.34 7.81 -2.91 -0.02 2.31 16 21 C -0.03 -1.63 5.46 84.65 0.46 -1.17 16 22 N -0.93 -57.22 13.65 21.45 0.29 -56.92 16 23 Si 1.12 51.55 29.90 68.60 2.05 53.60 16 24 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 26 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 27 C -0.22 -9.37 9.20 22.40 0.21 -9.16 16 28 C -0.06 -1.94 9.69 22.25 0.22 -1.72 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 1.22 7.60 -2.39 -0.02 1.20 16 32 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.06 0.84 7.45 -2.39 -0.02 0.83 16 39 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 40 H 0.34 7.02 8.46 -89.70 -0.76 6.26 16 41 H 0.07 1.56 8.00 -2.39 -0.02 1.54 16 42 H 0.05 0.87 7.38 -2.39 -0.02 0.85 16 43 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 44 H 0.13 3.76 6.14 -2.91 -0.02 3.75 16 45 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 46 H 0.09 2.47 6.20 -2.39 -0.01 2.46 16 47 H 0.06 2.10 7.89 -2.39 -0.02 2.08 16 48 H 0.00 0.26 6.08 -2.39 -0.01 0.24 16 49 H 0.00 0.27 7.76 -2.38 -0.02 0.25 16 50 H 0.26 15.85 7.22 -92.71 -0.67 15.18 16 51 H 0.09 4.44 6.15 -2.91 -0.02 4.42 16 52 H 0.12 3.89 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -65.63 401.24 2.91 -62.73 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: 0.22 Total: 24.45 kcal Atomic # 6 Polarization: -41.74 SS G_CDS: 5.23 Total: -36.51 kcal Atomic # 7 Polarization: -99.68 SS G_CDS: -4.59 Total: -104.27 kcal Atomic # 14 Polarization: 51.55 SS G_CDS: 2.05 Total: 53.60 kcal Total: -65.63 2.91 -62.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072659598.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.838 kcal (2) G-P(sol) polarization free energy of solvation -65.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds