Wall clock time and date at job start Tue Mar 31 2020 11:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47362 * 2 1 4 4 C 1.53006 * 109.46623 * 240.00551 * 2 1 3 5 5 C 1.52999 * 109.46626 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.46991 * 60.00378 * 5 4 2 7 7 C 1.52996 * 109.47131 * 299.99311 * 6 5 4 8 8 C 1.52997 * 109.47317 * 120.00732 * 2 1 3 9 9 H 1.08996 * 109.46952 * 59.99813 * 8 2 1 10 10 N 1.46896 * 109.47114 * 299.99833 * 8 2 1 11 11 C 1.46897 * 111.00439 * 155.00108 * 10 8 2 12 12 C 1.50693 * 109.47471 * 179.97438 * 11 10 8 13 13 C 1.38293 * 119.92369 * 269.72659 * 12 11 10 14 14 C 1.38108 * 120.07164 * 179.72617 * 13 12 11 15 15 C 1.38911 * 119.92249 * 0.54511 * 14 13 12 16 16 N 1.39681 * 120.07223 * 179.74756 * 15 14 13 17 17 C 1.46495 * 119.99737 * 179.97438 * 16 15 14 18 18 C 1.46497 * 119.99684 * 359.97438 * 16 15 14 19 19 C 1.50699 * 109.47465 * 89.99719 * 18 16 15 20 20 H 1.08000 * 119.99929 * 0.02562 * 19 18 16 21 21 C 1.37879 * 119.99884 * 179.97438 * 19 18 16 22 22 N 1.31508 * 120.00247 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99493 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47087 * 90.00629 * 23 21 19 25 25 H 1.48499 * 109.46870 * 210.00205 * 23 21 19 26 26 H 1.48495 * 109.47324 * 330.00016 * 23 21 19 27 27 C 1.38907 * 119.85172 * 359.72870 * 15 14 13 28 28 C 1.38096 * 119.92836 * 0.02562 * 27 15 14 29 29 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46716 * 299.99359 * 1 2 3 31 31 H 1.09000 * 109.47486 * 59.99277 * 1 2 3 32 32 H 1.08993 * 109.46955 * 300.00075 * 4 2 1 33 33 H 1.09000 * 109.47050 * 59.99904 * 4 2 1 34 34 H 1.09002 * 109.46719 * 180.02562 * 5 4 2 35 35 H 1.08993 * 109.47839 * 299.99931 * 5 4 2 36 36 H 1.09001 * 109.47289 * 179.97438 * 6 5 4 37 37 H 1.09000 * 109.47611 * 59.99933 * 6 5 4 38 38 H 1.08996 * 109.47452 * 300.00000 * 7 6 5 39 39 H 1.09000 * 109.47054 * 180.02562 * 7 6 5 40 40 H 1.00896 * 111.00578 * 31.04501 * 10 8 2 41 41 H 1.09001 * 109.46845 * 300.00443 * 11 10 8 42 42 H 1.09004 * 109.46906 * 59.99424 * 11 10 8 43 43 H 1.07993 * 119.96211 * 359.97438 * 13 12 11 44 44 H 1.07994 * 120.03503 * 180.27280 * 14 13 12 45 45 H 1.08996 * 109.47096 * 90.00503 * 17 16 15 46 46 H 1.09009 * 109.46774 * 209.99878 * 17 16 15 47 47 H 1.08997 * 109.47534 * 329.99522 * 17 16 15 48 48 H 1.09005 * 109.47035 * 209.99926 * 18 16 15 49 49 H 1.09002 * 109.47213 * 329.99061 * 18 16 15 50 50 H 0.97003 * 120.00153 * 179.97438 * 22 21 19 51 51 H 1.08006 * 120.03648 * 179.97438 * 27 15 14 52 52 H 1.08003 * 119.96629 * 180.02562 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5699 -0.7206 -1.2497 6 6 4.0804 -1.4417 -0.0006 7 6 3.5705 -0.7206 1.2487 8 6 2.0400 -0.7214 1.2491 9 1 1.6767 -1.7490 1.2490 10 7 1.5504 -0.0291 2.4486 11 6 1.4877 -0.9442 3.5960 12 6 0.9829 -0.1999 4.8052 13 6 1.8781 0.4251 5.6540 14 6 1.4185 1.1128 6.7599 15 6 0.0560 1.1667 7.0255 16 7 -0.4119 1.8569 8.1461 17 6 -1.8491 1.9132 8.4242 18 6 0.5346 2.5245 9.0431 19 6 0.7559 3.9402 8.5765 20 1 0.2425 4.3063 7.6996 21 6 1.6130 4.7685 9.2696 22 7 2.2371 4.3233 10.3381 23 14 1.8867 6.5237 8.6915 24 1 0.8953 7.4188 9.3404 25 1 3.2590 6.9571 9.0577 26 1 1.7235 6.5904 7.2170 27 6 -0.8400 0.5330 6.1739 28 6 -0.3740 -0.1486 5.0670 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.6765 -1.7488 -1.2495 33 1 1.6765 -0.2072 -2.1393 34 1 3.9331 -1.2340 -2.1400 35 1 3.9329 0.3071 -1.2499 36 1 5.1704 -1.4417 -0.0010 37 1 3.7174 -2.4695 -0.0005 38 1 3.9335 0.3072 1.2486 39 1 3.9346 -1.2340 2.1386 40 1 0.6528 0.3990 2.2781 41 1 0.8113 -1.7678 3.3672 42 1 2.4831 -1.3380 3.8015 43 1 2.9375 0.3787 5.4495 44 1 2.1178 1.6044 7.4199 45 1 -2.1307 1.0688 9.0532 46 1 -2.0831 2.8445 8.9401 47 1 -2.4028 1.8684 7.4864 48 1 0.1305 2.5345 10.0554 49 1 1.4829 1.9871 9.0358 50 1 2.8404 4.9059 10.8255 51 1 -1.8999 0.5727 6.3778 52 1 -1.0701 -0.6412 4.4043 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072659600.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:02 Heat of formation + Delta-G solvation = 6.102953 kcal Electronic energy + Delta-G solvation = -26329.826603 eV Core-core repulsion = 22906.723284 eV Total energy + Delta-G solvation = -3423.103320 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.54094 -38.83192 -36.16663 -34.53105 -32.82663 -32.60119 -30.58306 -30.40288 -28.52454 -27.77931 -26.46699 -25.44968 -24.03707 -22.37023 -21.66422 -21.43050 -21.29628 -19.94299 -19.46768 -16.73913 -16.45775 -16.06817 -15.33758 -15.15397 -14.84653 -14.55970 -14.42654 -14.37861 -14.17958 -13.70673 -13.58911 -13.18990 -12.98273 -12.86088 -12.72450 -12.54811 -12.14883 -12.12687 -12.06505 -11.75771 -11.69998 -11.38487 -11.30086 -11.23101 -11.07202 -10.94223 -10.75457 -10.69455 -10.66086 -10.27752 -10.23739 -10.16117 -9.87855 -9.72426 -8.82106 -8.49410 -8.29900 -8.22636 -6.44854 -6.00232 -4.15984 2.14033 2.24723 3.27525 3.34432 3.39600 4.12135 4.18966 4.42865 4.47096 4.51129 4.62623 4.74953 4.90334 5.05876 5.17881 5.22926 5.24325 5.28314 5.32883 5.35827 5.38486 5.44514 5.55286 5.59051 5.62544 5.67101 5.77291 5.82151 5.83219 5.86355 5.92575 5.98980 6.04406 6.08240 6.09428 6.11035 6.15176 6.29129 6.32331 6.42559 6.46600 6.66486 6.95660 7.03441 7.17221 7.21209 7.29343 7.40113 7.52683 7.63397 7.82517 8.16962 8.28498 8.50657 8.93114 9.50891 10.96977 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014897 B = 0.002683 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.068163 B =10432.013944 C =11266.760956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.094 4.094 3 H 0.079 0.921 4 C -0.111 4.111 5 C -0.120 4.120 6 C -0.119 4.119 7 C -0.108 4.108 8 C 0.093 3.907 9 H 0.039 0.961 10 N -0.683 5.683 11 C 0.117 3.883 12 C -0.172 4.172 13 C -0.051 4.051 14 C -0.188 4.188 15 C 0.241 3.759 16 N -0.616 5.616 17 C 0.099 3.901 18 C 0.249 3.751 19 C -0.530 4.530 20 H 0.059 0.941 21 C 0.061 3.939 22 N -0.896 5.896 23 Si 0.896 3.104 24 H -0.281 1.281 25 H -0.285 1.285 26 H -0.273 1.273 27 C -0.222 4.222 28 C -0.069 4.069 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.342 0.658 41 H 0.025 0.975 42 H 0.070 0.930 43 H 0.111 0.889 44 H 0.131 0.869 45 H 0.035 0.965 46 H 0.066 0.934 47 H 0.054 0.946 48 H 0.030 0.970 49 H 0.036 0.964 50 H 0.264 0.736 51 H 0.112 0.888 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.845 -12.404 -19.494 23.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.113 4.113 3 H 0.097 0.903 4 C -0.149 4.149 5 C -0.158 4.158 6 C -0.157 4.157 7 C -0.146 4.146 8 C -0.016 4.016 9 H 0.057 0.943 10 N -0.316 5.316 11 C -0.011 4.011 12 C -0.175 4.175 13 C -0.070 4.070 14 C -0.210 4.210 15 C 0.134 3.866 16 N -0.322 5.322 17 C -0.046 4.046 18 C 0.129 3.871 19 C -0.569 4.569 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.535 5.535 23 Si 0.723 3.277 24 H -0.207 1.207 25 H -0.211 1.211 26 H -0.197 1.197 27 C -0.245 4.245 28 C -0.089 4.089 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.163 0.837 41 H 0.043 0.957 42 H 0.089 0.911 43 H 0.129 0.871 44 H 0.149 0.851 45 H 0.053 0.947 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.048 0.952 49 H 0.054 0.946 50 H 0.073 0.927 51 H 0.130 0.870 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.190 -11.973 -18.955 22.451 hybrid contribution -0.640 0.612 -0.368 0.959 sum -1.830 -11.361 -19.323 22.490 Atomic orbital electron populations 1.21905 0.95501 1.01653 1.02024 1.21290 0.95219 1.00517 0.94275 0.90299 1.21560 0.95611 1.00456 0.97271 1.21541 0.95578 1.00934 0.97713 1.21542 1.00190 0.99230 0.94784 1.21540 0.94698 1.01343 0.97035 1.21526 0.95353 0.95528 0.89223 0.94318 1.60598 1.33998 1.33320 1.03703 1.20673 0.99750 0.92181 0.88525 1.19191 0.93259 1.06559 0.98451 1.20639 0.98497 0.94783 0.93092 1.20900 0.94360 1.05177 1.00595 1.17954 0.92703 0.89300 0.86628 1.47097 1.05895 1.54007 1.25176 1.21464 0.82252 1.00912 0.99924 1.19283 0.87972 0.91653 0.88171 1.21579 1.26239 0.96859 1.12262 0.92266 1.24960 0.95493 0.98789 0.94828 1.69927 1.29067 1.36544 1.17918 0.86524 0.77467 0.84426 0.79250 1.20662 1.21072 1.19734 1.20506 0.98379 1.06985 0.98636 1.20493 0.94372 0.97874 0.96114 0.92922 0.92219 0.92406 0.92189 0.92005 0.92293 0.91869 0.92018 0.92357 0.91213 0.92067 0.83710 0.95652 0.91145 0.87066 0.85100 0.94665 0.91478 0.92729 0.95245 0.94617 0.92655 0.87005 0.87849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.96 37.16 0.33 -0.94 16 2 C -0.09 -0.84 2.38 -90.62 -0.22 -1.05 16 3 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 4 C -0.11 -0.84 5.20 -26.73 -0.14 -0.98 16 5 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 6 C -0.12 -0.97 5.92 -26.73 -0.16 -1.12 16 7 C -0.11 -1.07 5.43 -26.71 -0.14 -1.22 16 8 C 0.09 0.94 1.97 -67.69 -0.13 0.81 16 9 H 0.04 0.40 7.80 -51.93 -0.40 -0.01 16 10 N -0.68 -8.30 6.30 -107.98 -0.68 -8.98 16 11 C 0.12 1.50 5.61 -4.98 -0.03 1.47 16 12 C -0.17 -2.69 5.40 -104.59 -0.56 -3.26 16 13 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 14 C -0.19 -3.87 9.21 -39.38 -0.36 -4.23 16 15 C 0.24 4.95 6.55 -83.78 -0.55 4.40 16 16 N -0.62 -13.34 2.99 -181.00 -0.54 -13.88 16 17 C 0.10 1.75 10.19 59.84 0.61 2.36 16 18 C 0.25 6.30 4.91 -5.20 -0.03 6.27 16 19 C -0.53 -14.61 9.39 -34.44 -0.32 -14.93 16 20 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 22 N -0.90 -25.84 13.29 55.43 0.74 -25.10 16 23 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 26 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 27 C -0.22 -3.89 9.21 -39.39 -0.36 -4.26 16 28 C -0.07 -1.08 9.69 -39.62 -0.38 -1.46 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.53 6.21 -51.93 -0.32 0.21 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.64 7.46 -51.93 -0.39 0.25 16 40 H 0.34 4.14 6.16 -39.29 -0.24 3.89 16 41 H 0.03 0.30 8.00 -51.93 -0.42 -0.11 16 42 H 0.07 0.89 7.38 -51.93 -0.38 0.51 16 43 H 0.11 1.81 8.06 -52.49 -0.42 1.38 16 44 H 0.13 2.98 6.14 -52.49 -0.32 2.65 16 45 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 1.21 8.07 -51.92 -0.42 0.79 16 47 H 0.05 0.86 6.20 -51.93 -0.32 0.54 16 48 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 49 H 0.04 0.96 6.20 -51.93 -0.32 0.63 16 50 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 51 H 0.11 1.77 6.14 -52.48 -0.32 1.45 16 52 H 0.10 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 400.14 15.07 6.03 6.03 Total: -1.00 -28.55 400.14 -11.89 -40.44 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -9.32 Total: 3.88 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -3.09 Total: -18.87 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: -0.48 Total: -47.96 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -28.55 -11.89 -40.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072659600.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.541 kcal (2) G-P(sol) polarization free energy of solvation -28.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds