Wall clock time and date at job start Tue Mar 31 2020 11:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47362 * 2 1 4 4 C 1.53006 * 109.46623 * 240.00551 * 2 1 3 5 5 C 1.52999 * 109.46626 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.46991 * 60.00378 * 5 4 2 7 7 C 1.52996 * 109.47131 * 299.99311 * 6 5 4 8 8 C 1.52997 * 109.47317 * 120.00732 * 2 1 3 9 9 H 1.08996 * 109.46952 * 59.99813 * 8 2 1 10 10 N 1.46896 * 109.47114 * 299.99833 * 8 2 1 11 11 C 1.46897 * 111.00439 * 155.00108 * 10 8 2 12 12 C 1.50693 * 109.47471 * 179.97438 * 11 10 8 13 13 C 1.38293 * 119.92369 * 269.72659 * 12 11 10 14 14 C 1.38108 * 120.07164 * 179.72617 * 13 12 11 15 15 C 1.38911 * 119.92249 * 0.54511 * 14 13 12 16 16 N 1.39681 * 120.07223 * 179.74756 * 15 14 13 17 17 C 1.46495 * 119.99737 * 179.97438 * 16 15 14 18 18 C 1.46497 * 119.99684 * 359.97438 * 16 15 14 19 19 C 1.50699 * 109.47465 * 89.99719 * 18 16 15 20 20 H 1.08000 * 119.99929 * 0.02562 * 19 18 16 21 21 C 1.37879 * 119.99884 * 179.97438 * 19 18 16 22 22 N 1.31508 * 120.00247 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99493 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47087 * 90.00629 * 23 21 19 25 25 H 1.48499 * 109.46870 * 210.00205 * 23 21 19 26 26 H 1.48495 * 109.47324 * 330.00016 * 23 21 19 27 27 C 1.38907 * 119.85172 * 359.72870 * 15 14 13 28 28 C 1.38096 * 119.92836 * 0.02562 * 27 15 14 29 29 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46716 * 299.99359 * 1 2 3 31 31 H 1.09000 * 109.47486 * 59.99277 * 1 2 3 32 32 H 1.08993 * 109.46955 * 300.00075 * 4 2 1 33 33 H 1.09000 * 109.47050 * 59.99904 * 4 2 1 34 34 H 1.09002 * 109.46719 * 180.02562 * 5 4 2 35 35 H 1.08993 * 109.47839 * 299.99931 * 5 4 2 36 36 H 1.09001 * 109.47289 * 179.97438 * 6 5 4 37 37 H 1.09000 * 109.47611 * 59.99933 * 6 5 4 38 38 H 1.08996 * 109.47452 * 300.00000 * 7 6 5 39 39 H 1.09000 * 109.47054 * 180.02562 * 7 6 5 40 40 H 1.00896 * 111.00578 * 31.04501 * 10 8 2 41 41 H 1.09001 * 109.46845 * 300.00443 * 11 10 8 42 42 H 1.09004 * 109.46906 * 59.99424 * 11 10 8 43 43 H 1.07993 * 119.96211 * 359.97438 * 13 12 11 44 44 H 1.07994 * 120.03503 * 180.27280 * 14 13 12 45 45 H 1.08996 * 109.47096 * 90.00503 * 17 16 15 46 46 H 1.09009 * 109.46774 * 209.99878 * 17 16 15 47 47 H 1.08997 * 109.47534 * 329.99522 * 17 16 15 48 48 H 1.09005 * 109.47035 * 209.99926 * 18 16 15 49 49 H 1.09002 * 109.47213 * 329.99061 * 18 16 15 50 50 H 0.97003 * 120.00153 * 179.97438 * 22 21 19 51 51 H 1.08006 * 120.03648 * 179.97438 * 27 15 14 52 52 H 1.08003 * 119.96629 * 180.02562 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5699 -0.7206 -1.2497 6 6 4.0804 -1.4417 -0.0006 7 6 3.5705 -0.7206 1.2487 8 6 2.0400 -0.7214 1.2491 9 1 1.6767 -1.7490 1.2490 10 7 1.5504 -0.0291 2.4486 11 6 1.4877 -0.9442 3.5960 12 6 0.9829 -0.1999 4.8052 13 6 1.8781 0.4251 5.6540 14 6 1.4185 1.1128 6.7599 15 6 0.0560 1.1667 7.0255 16 7 -0.4119 1.8569 8.1461 17 6 -1.8491 1.9132 8.4242 18 6 0.5346 2.5245 9.0431 19 6 0.7559 3.9402 8.5765 20 1 0.2425 4.3063 7.6996 21 6 1.6130 4.7685 9.2696 22 7 2.2371 4.3233 10.3381 23 14 1.8867 6.5237 8.6915 24 1 0.8953 7.4188 9.3404 25 1 3.2590 6.9571 9.0577 26 1 1.7235 6.5904 7.2170 27 6 -0.8400 0.5330 6.1739 28 6 -0.3740 -0.1486 5.0670 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.6765 -1.7488 -1.2495 33 1 1.6765 -0.2072 -2.1393 34 1 3.9331 -1.2340 -2.1400 35 1 3.9329 0.3071 -1.2499 36 1 5.1704 -1.4417 -0.0010 37 1 3.7174 -2.4695 -0.0005 38 1 3.9335 0.3072 1.2486 39 1 3.9346 -1.2340 2.1386 40 1 0.6528 0.3990 2.2781 41 1 0.8113 -1.7678 3.3672 42 1 2.4831 -1.3380 3.8015 43 1 2.9375 0.3787 5.4495 44 1 2.1178 1.6044 7.4199 45 1 -2.1307 1.0688 9.0532 46 1 -2.0831 2.8445 8.9401 47 1 -2.4028 1.8684 7.4864 48 1 0.1305 2.5345 10.0554 49 1 1.4829 1.9871 9.0358 50 1 2.8404 4.9059 10.8255 51 1 -1.8999 0.5727 6.3778 52 1 -1.0701 -0.6412 4.4043 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072659600.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:01 Heat of formation + Delta-G solvation = -7.418343 kcal Electronic energy + Delta-G solvation = -26330.412931 eV Core-core repulsion = 22906.723284 eV Total energy + Delta-G solvation = -3423.689647 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.58604 -39.98456 -37.58133 -35.65202 -34.68864 -33.44926 -31.88541 -31.69524 -29.75401 -29.41129 -27.33782 -26.71728 -25.58597 -23.78262 -23.00979 -22.46617 -21.98956 -21.05777 -20.52880 -18.64121 -18.14096 -17.09599 -16.89351 -16.24026 -16.00886 -15.74330 -15.55062 -15.34787 -15.23262 -15.06950 -14.78442 -14.57999 -14.29819 -14.05028 -13.81457 -13.61184 -13.38031 -13.18055 -13.13166 -13.08278 -12.92705 -12.78055 -12.67573 -12.54008 -12.38160 -12.25321 -12.02852 -11.91623 -11.75685 -11.70275 -11.42446 -11.33998 -11.01549 -10.87772 -10.64589 -10.39122 -9.66538 -9.21395 -8.36556 -7.80068 -6.37878 0.71432 0.84305 1.35972 1.37625 1.48749 2.34058 2.63603 3.01933 3.05792 3.47956 3.76883 3.85342 4.02577 4.07414 4.14876 4.22825 4.26476 4.36916 4.44514 4.48782 4.50668 4.57820 4.63168 4.64255 4.67001 4.72599 4.75195 4.82410 4.86875 4.90042 4.94378 5.01926 5.03243 5.11486 5.13304 5.19768 5.21057 5.25994 5.32942 5.33507 5.38663 5.43147 5.44671 5.58816 5.61337 5.67224 5.69938 5.94630 6.06878 6.19122 6.29256 6.50118 6.59502 6.82547 6.94054 7.34008 8.82868 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014897 B = 0.002683 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.068163 B =10432.013944 C =11266.760956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 H 0.064 0.936 4 C -0.108 4.108 5 C -0.120 4.120 6 C -0.116 4.116 7 C -0.108 4.108 8 C 0.097 3.903 9 H 0.045 0.955 10 N -0.695 5.695 11 C 0.123 3.877 12 C -0.158 4.158 13 C -0.056 4.056 14 C -0.217 4.217 15 C 0.212 3.788 16 N -0.632 5.632 17 C 0.098 3.902 18 C 0.267 3.733 19 C -0.541 4.541 20 H 0.048 0.952 21 C 0.012 3.988 22 N -0.927 5.927 23 Si 0.961 3.039 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.273 1.273 27 C -0.216 4.216 28 C -0.062 4.062 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.343 0.657 41 H 0.045 0.955 42 H 0.070 0.930 43 H 0.118 0.882 44 H 0.093 0.907 45 H 0.052 0.948 46 H 0.056 0.944 47 H 0.079 0.921 48 H 0.009 0.991 49 H 0.010 0.990 50 H 0.267 0.733 51 H 0.134 0.866 52 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.134 -13.415 -22.415 26.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 H 0.082 0.918 4 C -0.145 4.145 5 C -0.157 4.157 6 C -0.154 4.154 7 C -0.146 4.146 8 C -0.013 4.013 9 H 0.062 0.938 10 N -0.329 5.329 11 C -0.006 4.006 12 C -0.161 4.161 13 C -0.076 4.076 14 C -0.240 4.240 15 C 0.107 3.893 16 N -0.340 5.340 17 C -0.045 4.045 18 C 0.145 3.855 19 C -0.579 4.579 20 H 0.067 0.933 21 C -0.187 4.187 22 N -0.567 5.567 23 Si 0.786 3.214 24 H -0.195 1.195 25 H -0.204 1.204 26 H -0.198 1.198 27 C -0.238 4.238 28 C -0.080 4.080 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.164 0.836 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.136 0.864 44 H 0.111 0.889 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.097 0.903 48 H 0.027 0.973 49 H 0.028 0.972 50 H 0.076 0.924 51 H 0.152 0.848 52 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.494 -13.007 -21.904 25.597 hybrid contribution -0.210 0.827 0.450 0.964 sum -2.704 -12.180 -21.454 24.818 Atomic orbital electron populations 1.21882 0.94811 1.02067 1.02066 1.21254 0.95771 0.99685 0.94326 0.91760 1.21544 0.95505 1.00687 0.96813 1.21545 0.95650 1.00646 0.97881 1.21515 1.00446 0.99328 0.94087 1.21532 0.94838 1.00502 0.97759 1.21544 0.95183 0.95679 0.88855 0.93756 1.60549 1.34248 1.33723 1.04364 1.20615 1.00151 0.92264 0.87526 1.19530 0.93226 1.04846 0.98492 1.20770 0.99467 0.94705 0.92630 1.20776 0.94403 1.07099 1.01681 1.18222 0.93132 0.90653 0.87247 1.46964 1.06695 1.54907 1.25468 1.21602 0.80320 1.01135 1.01422 1.18764 0.87808 0.90917 0.88019 1.21770 1.26264 0.98066 1.11846 0.93350 1.25784 0.95136 1.02908 0.94880 1.70034 1.29634 1.38066 1.18946 0.85504 0.77756 0.79538 0.78595 1.19464 1.20371 1.19751 1.20778 0.98965 1.05916 0.98181 1.20907 0.94880 0.96665 0.95598 0.92260 0.92937 0.91634 0.91556 0.91139 0.90969 0.92529 0.91661 0.91679 0.92849 0.92914 0.83565 0.93686 0.91113 0.86415 0.88858 0.92912 0.92547 0.90283 0.97252 0.97223 0.92373 0.84834 0.84003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 8.96 71.98 0.64 -1.46 16 2 C -0.09 -1.44 2.38 -10.79 -0.03 -1.46 16 3 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 4 C -0.11 -1.35 5.20 30.60 0.16 -1.19 16 5 C -0.12 -1.54 5.92 30.59 0.18 -1.36 16 6 C -0.12 -1.66 5.92 30.59 0.18 -1.48 16 7 C -0.11 -2.02 5.43 30.61 0.17 -1.85 16 8 C 0.10 1.75 1.97 44.93 0.09 1.84 16 9 H 0.04 0.78 7.80 -2.39 -0.02 0.76 16 10 N -0.69 -15.51 6.30 -495.53 -3.12 -18.63 16 11 C 0.12 2.84 5.61 85.56 0.48 3.32 16 12 C -0.16 -4.66 5.40 -19.84 -0.11 -4.77 16 13 C -0.06 -2.02 9.69 22.25 0.22 -1.80 16 14 C -0.22 -9.39 9.21 22.40 0.21 -9.18 16 15 C 0.21 8.84 6.55 38.21 0.25 9.09 16 16 N -0.63 -28.22 2.99 -726.57 -2.17 -30.39 16 17 C 0.10 3.45 10.19 127.77 1.30 4.75 16 18 C 0.27 14.30 4.91 85.63 0.42 14.72 16 19 C -0.54 -30.98 9.39 25.60 0.24 -30.74 16 20 H 0.05 2.82 7.81 -2.91 -0.02 2.79 16 21 C 0.01 0.69 5.46 84.66 0.46 1.15 16 22 N -0.93 -55.26 13.29 21.45 0.28 -54.97 16 23 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 25 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 26 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 27 C -0.22 -7.14 9.21 22.40 0.21 -6.94 16 28 C -0.06 -1.73 9.69 22.25 0.22 -1.51 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.05 0.81 6.21 -2.39 -0.01 0.79 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.05 1.05 7.46 -2.39 -0.02 1.04 16 40 H 0.34 7.48 6.16 -89.70 -0.55 6.93 16 41 H 0.05 0.90 8.00 -2.39 -0.02 0.88 16 42 H 0.07 1.66 7.38 -2.39 -0.02 1.64 16 43 H 0.12 3.93 8.06 -2.91 -0.02 3.90 16 44 H 0.09 4.67 6.14 -2.91 -0.02 4.65 16 45 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.06 2.06 8.07 -2.38 -0.02 2.04 16 47 H 0.08 2.34 6.20 -2.39 -0.01 2.33 16 48 H 0.01 0.53 8.07 -2.38 -0.02 0.51 16 49 H 0.01 0.57 6.20 -2.39 -0.01 0.55 16 50 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 51 H 0.13 3.79 6.14 -2.91 -0.02 3.78 16 52 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -63.82 400.14 2.63 -61.19 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: 0.32 Total: 24.80 kcal Atomic # 6 Polarization: -34.18 SS G_CDS: 5.29 Total: -28.89 kcal Atomic # 7 Polarization: -98.99 SS G_CDS: -5.01 Total: -104.00 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -63.82 2.63 -61.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072659600.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.775 kcal (2) G-P(sol) polarization free energy of solvation -63.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds