Wall clock time and date at job start Tue Mar 31 2020 11:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47456 * 2 1 4 4 C 1.52999 * 109.47259 * 119.99595 * 2 1 3 5 5 C 1.53004 * 109.47192 * 60.00173 * 4 2 1 6 6 C 1.52999 * 109.46999 * 60.00114 * 5 4 2 7 7 C 1.53008 * 109.46967 * 300.00142 * 6 5 4 8 8 C 1.52996 * 109.47132 * 60.00086 * 7 6 5 9 9 H 1.08994 * 109.46963 * 60.00268 * 8 7 6 10 10 N 1.46901 * 109.46887 * 180.02562 * 8 7 6 11 11 C 1.46898 * 111.00093 * 274.99993 * 10 8 7 12 12 C 1.50704 * 109.47211 * 180.02562 * 11 10 8 13 13 C 1.38285 * 119.92630 * 89.99911 * 12 11 10 14 14 C 1.38098 * 120.07840 * 180.02562 * 13 12 11 15 15 C 1.38911 * 119.91952 * 0.02562 * 14 13 12 16 16 N 1.39677 * 120.07361 * 179.97438 * 15 14 13 17 17 C 1.46508 * 119.99671 * 0.02562 * 16 15 14 18 18 C 1.46500 * 120.00191 * 179.97438 * 16 15 14 19 19 C 1.50706 * 109.46953 * 269.99897 * 18 16 15 20 20 H 1.07999 * 120.00193 * 0.02562 * 19 18 16 21 21 C 1.37879 * 119.99398 * 179.97438 * 19 18 16 22 22 N 1.31514 * 120.00338 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99424 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46845 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47399 * 299.99813 * 23 21 19 26 26 H 1.48498 * 109.47295 * 60.00420 * 23 21 19 27 27 C 1.38910 * 119.85751 * 0.25001 * 15 14 13 28 28 C 1.38109 * 119.91619 * 359.49565 * 27 15 14 29 29 H 1.09002 * 109.46914 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47236 * 299.99813 * 1 2 3 31 31 H 1.08994 * 109.47515 * 60.00448 * 1 2 3 32 32 H 1.08999 * 109.47770 * 299.99875 * 4 2 1 33 33 H 1.09003 * 109.47164 * 180.02562 * 4 2 1 34 34 H 1.08994 * 109.46844 * 299.99814 * 5 4 2 35 35 H 1.09003 * 109.47289 * 179.97438 * 5 4 2 36 36 H 1.09000 * 109.47056 * 180.02562 * 6 5 4 37 37 H 1.08994 * 109.47568 * 60.00143 * 6 5 4 38 38 H 1.09003 * 109.47068 * 300.00104 * 7 6 5 39 39 H 1.08998 * 109.47208 * 180.02562 * 7 6 5 40 40 H 1.00906 * 110.99759 * 151.04618 * 10 8 7 41 41 H 1.09000 * 109.47199 * 60.00149 * 11 10 8 42 42 H 1.09004 * 109.47053 * 300.00059 * 11 10 8 43 43 H 1.08004 * 119.96046 * 0.02562 * 13 12 11 44 44 H 1.07996 * 120.03944 * 180.02562 * 14 13 12 45 45 H 1.09000 * 109.46557 * 269.99239 * 17 16 15 46 46 H 1.08991 * 109.47146 * 29.99633 * 17 16 15 47 47 H 1.09005 * 109.46914 * 149.99633 * 17 16 15 48 48 H 1.09000 * 109.47175 * 150.00327 * 18 16 15 49 49 H 1.08992 * 109.46764 * 30.00404 * 18 16 15 50 50 H 0.97000 * 119.99706 * 359.97438 * 22 21 19 51 51 H 1.07993 * 120.04168 * 179.72899 * 27 15 14 52 52 H 1.08004 * 119.95758 * 180.25139 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.5300 -2.1637 1.2494 6 6 2.0401 -2.8850 0.0002 7 6 1.5301 -2.1638 -1.2491 8 6 2.0400 -0.7213 -1.2492 9 1 3.1299 -0.7213 -1.2492 10 7 1.5498 -0.0287 -2.4484 11 6 2.4330 -0.2744 -3.5962 12 6 1.8995 0.4508 -4.8048 13 6 2.3038 1.7473 -5.0655 14 6 1.8166 2.4150 -6.1718 15 6 0.9189 1.7829 -7.0228 16 7 0.4237 2.4555 -8.1424 17 6 0.8514 3.8289 -8.4204 18 6 -0.5225 1.7871 -9.0392 19 6 0.2366 1.0647 -10.1223 20 1 1.3159 1.0996 -10.1406 21 6 -0.4469 0.3585 -11.0893 22 7 -1.7611 0.3156 -11.0668 23 14 0.4940 -0.5375 -12.4315 24 1 -0.4652 -1.2149 -13.3406 25 1 1.3033 0.4384 -13.2047 26 1 1.3918 -1.5480 -11.8165 27 6 0.5104 0.4826 -6.7549 28 6 1.0057 -0.1811 -5.6497 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.6767 -0.2073 2.1393 33 1 3.1300 -0.7207 1.2495 34 1 0.4401 -2.1637 1.2494 35 1 1.8938 -2.6776 2.1392 36 1 1.6764 -3.9125 0.0000 37 1 3.1300 -2.8850 0.0001 38 1 0.4400 -2.1638 -1.2491 39 1 1.8930 -2.6779 -2.1391 40 1 1.4455 0.9603 -2.2775 41 1 2.4723 -1.3441 -3.8020 42 1 3.4350 0.0888 -3.3679 43 1 3.0015 2.2383 -4.4031 44 1 2.1331 3.4274 -6.3750 45 1 0.1742 4.5269 -7.9283 46 1 1.8633 3.9775 -8.0438 47 1 0.8347 4.0038 -9.4962 48 1 -1.1815 2.5290 -9.4904 49 1 -1.1165 1.0707 -8.4720 50 1 -2.2496 0.7806 -10.3696 51 1 -0.1907 -0.0101 -7.4122 52 1 0.6917 -1.1936 -5.4430 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072659604.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:05 Heat of formation + Delta-G solvation = 5.744361 kcal Electronic energy + Delta-G solvation = -26339.474521 eV Core-core repulsion = 22916.355652 eV Total energy + Delta-G solvation = -3423.118869 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.73817 -38.96378 -36.30991 -34.62085 -32.92659 -32.14720 -30.64792 -30.43988 -28.65996 -27.53671 -26.61644 -25.38077 -23.88526 -22.54826 -22.22363 -21.62371 -21.53516 -19.73851 -18.71147 -17.11449 -16.62034 -16.16503 -15.57198 -15.27025 -15.00432 -14.69974 -14.40861 -14.11018 -13.94739 -13.77127 -13.63945 -13.23841 -13.10963 -12.94173 -12.79032 -12.52237 -12.32621 -12.15139 -11.86003 -11.80343 -11.68775 -11.47940 -11.32463 -11.29503 -11.23929 -11.02103 -10.75623 -10.66059 -10.48310 -10.23339 -10.19383 -10.15645 -9.99287 -9.51276 -8.61437 -8.45765 -8.35981 -8.29179 -6.61048 -6.25739 -4.18654 2.06864 2.17635 3.40201 3.42079 3.60653 4.06497 4.09339 4.43673 4.47541 4.48454 4.57629 4.79793 4.95898 5.05655 5.10399 5.19736 5.26514 5.27287 5.29687 5.34037 5.34459 5.48998 5.52264 5.57279 5.60533 5.74264 5.75175 5.78361 5.80007 5.82785 5.92047 5.93355 5.95870 6.02080 6.11312 6.12029 6.19363 6.21023 6.33681 6.37874 6.39227 6.56953 6.80578 6.87889 7.01406 7.09384 7.10583 7.28989 7.45275 7.54529 7.97059 8.03632 8.36355 8.50238 8.74418 9.51859 10.91523 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019980 B = 0.002442 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.049387 B =11463.294494 C =12121.195783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.064 0.936 4 C -0.112 4.112 5 C -0.121 4.121 6 C -0.119 4.119 7 C -0.109 4.109 8 C 0.093 3.907 9 H 0.038 0.962 10 N -0.679 5.679 11 C 0.116 3.884 12 C -0.169 4.169 13 C -0.068 4.068 14 C -0.221 4.221 15 C 0.241 3.759 16 N -0.613 5.613 17 C 0.099 3.901 18 C 0.240 3.760 19 C -0.611 4.611 20 H 0.053 0.947 21 C 0.020 3.980 22 N -0.909 5.909 23 Si 1.069 2.931 24 H -0.281 1.281 25 H -0.288 1.288 26 H -0.287 1.287 27 C -0.188 4.188 28 C -0.049 4.049 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.340 0.660 41 H 0.071 0.929 42 H 0.026 0.974 43 H 0.105 0.895 44 H 0.112 0.888 45 H 0.035 0.965 46 H 0.056 0.944 47 H 0.066 0.934 48 H 0.019 0.981 49 H 0.026 0.974 50 H 0.267 0.733 51 H 0.128 0.872 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.876 -0.685 22.890 24.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.083 0.917 4 C -0.150 4.150 5 C -0.159 4.159 6 C -0.157 4.157 7 C -0.147 4.147 8 C -0.017 4.017 9 H 0.056 0.944 10 N -0.310 5.310 11 C -0.012 4.012 12 C -0.172 4.172 13 C -0.087 4.087 14 C -0.244 4.244 15 C 0.134 3.866 16 N -0.318 5.318 17 C -0.045 4.045 18 C 0.119 3.881 19 C -0.649 4.649 20 H 0.071 0.929 21 C -0.184 4.184 22 N -0.545 5.545 23 Si 0.897 3.103 24 H -0.207 1.207 25 H -0.215 1.215 26 H -0.213 1.213 27 C -0.211 4.211 28 C -0.069 4.069 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.159 0.841 41 H 0.090 0.910 42 H 0.044 0.956 43 H 0.123 0.877 44 H 0.130 0.870 45 H 0.054 0.946 46 H 0.074 0.926 47 H 0.085 0.915 48 H 0.037 0.963 49 H 0.044 0.956 50 H 0.078 0.922 51 H 0.146 0.854 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.147 -2.010 21.154 22.419 hybrid contribution 1.068 1.622 1.433 2.413 sum 8.215 -0.388 22.587 24.037 Atomic orbital electron populations 1.21850 0.94408 1.02322 1.01543 1.21253 0.97051 0.98563 0.94217 0.91715 1.21539 1.00300 0.95835 0.97344 1.21577 1.01203 0.95444 0.97652 1.21540 1.00501 0.98910 0.94796 1.21564 1.01834 0.94317 0.97018 1.21510 0.96453 0.94558 0.89196 0.94373 1.60584 1.50949 1.15777 1.03679 1.20690 0.92470 0.99604 0.88463 1.19197 1.04054 0.95444 0.98501 1.20508 0.98299 0.93809 0.96132 1.20505 1.04391 1.00894 0.98579 1.17938 0.90953 0.91382 0.86332 1.46861 1.47588 1.12892 1.24502 1.21466 0.98516 0.83223 1.01260 1.19339 0.88066 0.92310 0.88359 1.22379 0.94942 1.34960 1.12653 0.92891 1.25831 0.96470 0.96248 0.99901 1.70826 1.06705 1.41736 1.35192 0.83529 0.74905 0.76246 0.75598 1.20664 1.21469 1.21301 1.20854 1.05581 0.94437 1.00203 1.20635 0.94643 0.98624 0.92988 0.92055 0.93593 0.91609 0.92021 0.92283 0.91524 0.92408 0.92031 0.92386 0.90875 0.92184 0.84133 0.91040 0.95564 0.87712 0.86964 0.94622 0.92558 0.91505 0.96321 0.95637 0.92238 0.85433 0.86995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.34 37.16 0.31 -0.95 16 2 C -0.09 -0.77 2.57 -90.62 -0.23 -1.00 16 3 H 0.06 0.54 8.12 -51.93 -0.42 0.11 16 4 C -0.11 -0.82 5.45 -26.73 -0.15 -0.96 16 5 C -0.12 -0.87 5.65 -26.73 -0.15 -1.02 16 6 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 7 C -0.11 -1.03 5.15 -26.73 -0.14 -1.17 16 8 C 0.09 0.88 2.19 -67.71 -0.15 0.74 16 9 H 0.04 0.38 7.80 -51.93 -0.41 -0.02 16 10 N -0.68 -7.66 5.58 -107.99 -0.60 -8.27 16 11 C 0.12 1.45 5.61 -4.97 -0.03 1.42 16 12 C -0.17 -2.62 5.39 -104.59 -0.56 -3.18 16 13 C -0.07 -1.05 9.69 -39.62 -0.38 -1.44 16 14 C -0.22 -3.87 9.21 -39.38 -0.36 -4.23 16 15 C 0.24 4.96 6.55 -83.79 -0.55 4.41 16 16 N -0.61 -13.37 2.99 -180.99 -0.54 -13.91 16 17 C 0.10 1.78 10.19 59.85 0.61 2.39 16 18 C 0.24 6.05 4.23 -5.19 -0.02 6.03 16 19 C -0.61 -16.98 9.39 -34.44 -0.32 -17.30 16 20 H 0.05 1.52 7.81 -52.49 -0.41 1.11 16 21 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 22 N -0.91 -26.94 13.65 55.43 0.76 -26.19 16 23 Si 1.07 25.10 29.90 -169.99 -5.08 20.02 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 27 C -0.19 -3.89 9.21 -39.38 -0.36 -4.25 16 28 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 29 H 0.06 0.55 4.81 -51.93 -0.25 0.30 16 30 H 0.04 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.06 0.66 7.48 -51.93 -0.39 0.27 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.49 6.43 -51.93 -0.33 0.16 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.75 6.43 -51.93 -0.33 0.42 16 39 H 0.06 0.62 7.46 -51.93 -0.39 0.23 16 40 H 0.34 3.79 8.18 -39.29 -0.32 3.47 16 41 H 0.07 0.90 7.38 -51.93 -0.38 0.52 16 42 H 0.03 0.31 8.00 -51.93 -0.42 -0.10 16 43 H 0.10 1.35 8.06 -52.48 -0.42 0.93 16 44 H 0.11 1.78 6.14 -52.49 -0.32 1.46 16 45 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.89 6.20 -51.93 -0.32 0.57 16 47 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 48 H 0.02 0.49 7.94 -51.93 -0.41 0.08 16 49 H 0.03 0.68 6.05 -51.93 -0.31 0.36 16 50 H 0.27 7.85 7.22 -40.82 -0.29 7.55 16 51 H 0.13 2.92 6.14 -52.49 -0.32 2.59 16 52 H 0.11 1.81 8.06 -52.48 -0.42 1.38 16 LS Contribution 394.09 15.07 5.94 5.94 Total: -1.00 -29.19 394.09 -11.72 -40.91 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -9.06 Total: 3.90 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: -3.13 Total: -22.40 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: -0.39 Total: -48.36 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -5.08 Total: 20.02 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.19 -11.72 -40.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072659604.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.655 kcal (2) G-P(sol) polarization free energy of solvation -29.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds