Wall clock time and date at job start Tue Mar 31 2020 11:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47456 * 2 1 4 4 C 1.52999 * 109.47259 * 119.99595 * 2 1 3 5 5 C 1.53004 * 109.47192 * 60.00173 * 4 2 1 6 6 C 1.52999 * 109.46999 * 60.00114 * 5 4 2 7 7 C 1.53008 * 109.46967 * 300.00142 * 6 5 4 8 8 C 1.52996 * 109.47132 * 60.00086 * 7 6 5 9 9 H 1.08994 * 109.46963 * 60.00268 * 8 7 6 10 10 N 1.46901 * 109.46887 * 180.02562 * 8 7 6 11 11 C 1.46898 * 111.00093 * 274.99993 * 10 8 7 12 12 C 1.50704 * 109.47211 * 180.02562 * 11 10 8 13 13 C 1.38285 * 119.92630 * 89.99911 * 12 11 10 14 14 C 1.38098 * 120.07840 * 180.02562 * 13 12 11 15 15 C 1.38911 * 119.91952 * 0.02562 * 14 13 12 16 16 N 1.39677 * 120.07361 * 179.97438 * 15 14 13 17 17 C 1.46508 * 119.99671 * 0.02562 * 16 15 14 18 18 C 1.46500 * 120.00191 * 179.97438 * 16 15 14 19 19 C 1.50706 * 109.46953 * 269.99897 * 18 16 15 20 20 H 1.07999 * 120.00193 * 0.02562 * 19 18 16 21 21 C 1.37879 * 119.99398 * 179.97438 * 19 18 16 22 22 N 1.31514 * 120.00338 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99424 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46845 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47399 * 299.99813 * 23 21 19 26 26 H 1.48498 * 109.47295 * 60.00420 * 23 21 19 27 27 C 1.38910 * 119.85751 * 0.25001 * 15 14 13 28 28 C 1.38109 * 119.91619 * 359.49565 * 27 15 14 29 29 H 1.09002 * 109.46914 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47236 * 299.99813 * 1 2 3 31 31 H 1.08994 * 109.47515 * 60.00448 * 1 2 3 32 32 H 1.08999 * 109.47770 * 299.99875 * 4 2 1 33 33 H 1.09003 * 109.47164 * 180.02562 * 4 2 1 34 34 H 1.08994 * 109.46844 * 299.99814 * 5 4 2 35 35 H 1.09003 * 109.47289 * 179.97438 * 5 4 2 36 36 H 1.09000 * 109.47056 * 180.02562 * 6 5 4 37 37 H 1.08994 * 109.47568 * 60.00143 * 6 5 4 38 38 H 1.09003 * 109.47068 * 300.00104 * 7 6 5 39 39 H 1.08998 * 109.47208 * 180.02562 * 7 6 5 40 40 H 1.00906 * 110.99759 * 151.04618 * 10 8 7 41 41 H 1.09000 * 109.47199 * 60.00149 * 11 10 8 42 42 H 1.09004 * 109.47053 * 300.00059 * 11 10 8 43 43 H 1.08004 * 119.96046 * 0.02562 * 13 12 11 44 44 H 1.07996 * 120.03944 * 180.02562 * 14 13 12 45 45 H 1.09000 * 109.46557 * 269.99239 * 17 16 15 46 46 H 1.08991 * 109.47146 * 29.99633 * 17 16 15 47 47 H 1.09005 * 109.46914 * 149.99633 * 17 16 15 48 48 H 1.09000 * 109.47175 * 150.00327 * 18 16 15 49 49 H 1.08992 * 109.46764 * 30.00404 * 18 16 15 50 50 H 0.97000 * 119.99706 * 359.97438 * 22 21 19 51 51 H 1.07993 * 120.04168 * 179.72899 * 27 15 14 52 52 H 1.08004 * 119.95758 * 180.25139 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.5300 -2.1637 1.2494 6 6 2.0401 -2.8850 0.0002 7 6 1.5301 -2.1638 -1.2491 8 6 2.0400 -0.7213 -1.2492 9 1 3.1299 -0.7213 -1.2492 10 7 1.5498 -0.0287 -2.4484 11 6 2.4330 -0.2744 -3.5962 12 6 1.8995 0.4508 -4.8048 13 6 2.3038 1.7473 -5.0655 14 6 1.8166 2.4150 -6.1718 15 6 0.9189 1.7829 -7.0228 16 7 0.4237 2.4555 -8.1424 17 6 0.8514 3.8289 -8.4204 18 6 -0.5225 1.7871 -9.0392 19 6 0.2366 1.0647 -10.1223 20 1 1.3159 1.0996 -10.1406 21 6 -0.4469 0.3585 -11.0893 22 7 -1.7611 0.3156 -11.0668 23 14 0.4940 -0.5375 -12.4315 24 1 -0.4652 -1.2149 -13.3406 25 1 1.3033 0.4384 -13.2047 26 1 1.3918 -1.5480 -11.8165 27 6 0.5104 0.4826 -6.7549 28 6 1.0057 -0.1811 -5.6497 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.6767 -0.2073 2.1393 33 1 3.1300 -0.7207 1.2495 34 1 0.4401 -2.1637 1.2494 35 1 1.8938 -2.6776 2.1392 36 1 1.6764 -3.9125 0.0000 37 1 3.1300 -2.8850 0.0001 38 1 0.4400 -2.1638 -1.2491 39 1 1.8930 -2.6779 -2.1391 40 1 1.4455 0.9603 -2.2775 41 1 2.4723 -1.3441 -3.8020 42 1 3.4350 0.0888 -3.3679 43 1 3.0015 2.2383 -4.4031 44 1 2.1331 3.4274 -6.3750 45 1 0.1742 4.5269 -7.9283 46 1 1.8633 3.9775 -8.0438 47 1 0.8347 4.0038 -9.4962 48 1 -1.1815 2.5290 -9.4904 49 1 -1.1165 1.0707 -8.4720 50 1 -2.2496 0.7806 -10.3696 51 1 -0.1907 -0.0101 -7.4122 52 1 0.6917 -1.1936 -5.4430 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072659604.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:03 Heat of formation + Delta-G solvation = -8.428450 kcal Electronic energy + Delta-G solvation = -26340.089100 eV Core-core repulsion = 22916.355652 eV Total energy + Delta-G solvation = -3423.733448 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.68781 -40.17555 -37.74879 -35.79030 -34.86929 -32.84380 -31.93190 -31.70713 -29.67656 -29.33139 -27.49075 -26.66410 -25.54180 -23.93765 -23.16669 -22.94448 -22.33910 -21.17776 -19.41862 -19.11971 -18.16214 -17.06274 -16.77904 -16.37236 -15.92497 -15.81734 -15.70333 -15.65715 -15.37560 -14.89110 -14.73801 -14.67728 -14.38578 -14.10033 -13.89744 -13.51800 -13.37705 -13.31425 -13.22006 -13.15785 -13.08944 -12.73534 -12.50765 -12.49478 -12.42668 -12.04940 -11.98946 -11.97129 -11.79595 -11.52998 -11.32473 -11.17969 -10.92807 -10.85147 -10.63032 -10.35522 -9.73308 -9.23164 -8.78816 -7.93437 -6.46415 0.64555 0.77521 1.48756 1.56070 1.76338 2.43708 2.54933 2.96118 3.07973 3.44513 3.77204 3.82973 3.99060 4.10856 4.12754 4.14983 4.31165 4.33352 4.37717 4.44242 4.48009 4.54387 4.55861 4.63151 4.65194 4.68663 4.70920 4.71866 4.78107 4.84503 4.87278 4.97610 5.01240 5.03354 5.09099 5.12196 5.17662 5.24104 5.27130 5.30458 5.43835 5.47502 5.49285 5.54296 5.59076 5.70395 5.82110 5.88236 5.97878 6.14436 6.25313 6.41529 6.57466 6.60879 6.82625 7.33097 8.64564 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019980 B = 0.002442 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.049387 B =11463.294494 C =12121.195783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 H 0.070 0.930 4 C -0.109 4.109 5 C -0.120 4.120 6 C -0.116 4.116 7 C -0.109 4.109 8 C 0.096 3.904 9 H 0.042 0.958 10 N -0.686 5.686 11 C 0.122 3.878 12 C -0.154 4.154 13 C -0.060 4.060 14 C -0.214 4.214 15 C 0.210 3.790 16 N -0.630 5.630 17 C 0.099 3.901 18 C 0.254 3.746 19 C -0.615 4.615 20 H 0.041 0.959 21 C -0.029 4.029 22 N -0.931 5.931 23 Si 1.115 2.885 24 H -0.279 1.279 25 H -0.269 1.269 26 H -0.275 1.275 27 C -0.218 4.218 28 C -0.055 4.055 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.048 0.952 40 H 0.343 0.657 41 H 0.069 0.931 42 H 0.045 0.955 43 H 0.145 0.855 44 H 0.134 0.866 45 H 0.053 0.947 46 H 0.081 0.919 47 H 0.054 0.946 48 H 0.004 0.996 49 H 0.004 0.996 50 H 0.256 0.744 51 H 0.089 0.911 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.499 -0.270 25.172 27.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 H 0.088 0.912 4 C -0.147 4.147 5 C -0.158 4.158 6 C -0.154 4.154 7 C -0.147 4.147 8 C -0.013 4.013 9 H 0.060 0.940 10 N -0.318 5.318 11 C -0.006 4.006 12 C -0.157 4.157 13 C -0.079 4.079 14 C -0.237 4.237 15 C 0.106 3.894 16 N -0.338 5.338 17 C -0.044 4.044 18 C 0.132 3.868 19 C -0.654 4.654 20 H 0.060 0.940 21 C -0.227 4.227 22 N -0.568 5.568 23 Si 0.937 3.063 24 H -0.205 1.205 25 H -0.194 1.194 26 H -0.201 1.201 27 C -0.241 4.241 28 C -0.074 4.074 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.162 0.838 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.162 0.838 44 H 0.152 0.848 45 H 0.072 0.928 46 H 0.099 0.901 47 H 0.073 0.927 48 H 0.021 0.979 49 H 0.022 0.978 50 H 0.065 0.935 51 H 0.107 0.893 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 9.790 -1.576 23.487 25.494 hybrid contribution 0.272 1.472 0.888 1.740 sum 10.062 -0.104 24.375 26.370 Atomic orbital electron populations 1.21808 0.94904 1.01914 1.01187 1.21233 0.96528 0.98840 0.94120 0.91209 1.21528 1.00570 0.95656 0.96986 1.21573 1.00987 0.95545 0.97667 1.21515 1.00687 0.98953 0.94274 1.21547 1.01058 0.94591 0.97490 1.21523 0.96547 0.94356 0.88923 0.94030 1.60519 1.50996 1.16178 1.04102 1.20616 0.93243 0.99150 0.87593 1.19539 1.02030 0.95564 0.98520 1.20931 0.97866 0.93507 0.95575 1.20783 1.02980 1.01770 0.98173 1.18222 0.92600 0.91629 0.86962 1.46763 1.47988 1.14230 1.24817 1.21605 1.00275 0.81613 1.00897 1.18880 0.88350 0.91444 0.88173 1.22598 0.94418 1.35014 1.13332 0.94044 1.27279 0.96579 0.96735 1.02154 1.70938 1.07590 1.42860 1.35404 0.82950 0.74146 0.75866 0.73387 1.20458 1.19436 1.20050 1.20733 1.06563 0.95384 1.01378 1.20765 0.95113 0.99021 0.92533 0.92516 0.92694 0.93181 0.91135 0.91786 0.91916 0.91281 0.91763 0.91961 0.92095 0.93298 0.83817 0.91239 0.93742 0.83775 0.84819 0.92810 0.90090 0.92727 0.97851 0.97821 0.93471 0.89298 0.86354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 8.34 71.98 0.60 -1.65 16 2 C -0.09 -1.26 2.57 -10.80 -0.03 -1.29 16 3 H 0.07 0.95 8.12 -2.39 -0.02 0.93 16 4 C -0.11 -1.29 5.45 30.60 0.17 -1.12 16 5 C -0.12 -1.45 5.65 30.60 0.17 -1.28 16 6 C -0.12 -1.61 5.92 30.60 0.18 -1.42 16 7 C -0.11 -1.92 5.15 30.60 0.16 -1.76 16 8 C 0.10 1.62 2.19 44.91 0.10 1.71 16 9 H 0.04 0.70 7.80 -2.39 -0.02 0.68 16 10 N -0.69 -14.03 5.58 -495.58 -2.76 -16.79 16 11 C 0.12 2.74 5.61 85.56 0.48 3.22 16 12 C -0.15 -4.45 5.39 -19.84 -0.11 -4.56 16 13 C -0.06 -1.65 9.69 22.25 0.22 -1.44 16 14 C -0.21 -7.07 9.21 22.40 0.21 -6.86 16 15 C 0.21 8.76 6.55 38.21 0.25 9.01 16 16 N -0.63 -28.23 2.99 -726.54 -2.17 -30.40 16 17 C 0.10 3.50 10.19 127.77 1.30 4.80 16 18 C 0.25 13.55 4.23 85.63 0.36 13.92 16 19 C -0.62 -35.49 9.39 25.60 0.24 -35.25 16 20 H 0.04 2.44 7.81 -2.91 -0.02 2.41 16 21 C -0.03 -1.68 5.46 84.66 0.46 -1.21 16 22 N -0.93 -57.21 13.65 21.45 0.29 -56.92 16 23 Si 1.12 51.00 29.90 68.60 2.05 53.05 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 25 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 27 C -0.22 -9.43 9.21 22.40 0.21 -9.22 16 28 C -0.06 -1.95 9.69 22.25 0.22 -1.74 16 29 H 0.06 0.95 4.81 -2.39 -0.01 0.94 16 30 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.05 0.95 7.48 -2.39 -0.02 0.93 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.06 0.82 6.43 -2.39 -0.02 0.80 16 35 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.06 1.22 6.43 -2.39 -0.02 1.20 16 39 H 0.05 0.96 7.46 -2.39 -0.02 0.94 16 40 H 0.34 6.73 8.18 -89.69 -0.73 6.00 16 41 H 0.07 1.62 7.38 -2.39 -0.02 1.60 16 42 H 0.04 0.87 8.00 -2.38 -0.02 0.85 16 43 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 44 H 0.13 3.79 6.14 -2.91 -0.02 3.77 16 45 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.08 2.42 6.20 -2.39 -0.01 2.40 16 47 H 0.05 2.02 8.07 -2.38 -0.02 2.01 16 48 H 0.00 0.20 7.94 -2.39 -0.02 0.18 16 49 H 0.00 0.22 6.05 -2.39 -0.01 0.21 16 50 H 0.26 15.86 7.22 -92.71 -0.67 15.19 16 51 H 0.09 4.46 6.14 -2.91 -0.02 4.44 16 52 H 0.12 3.92 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -65.52 394.09 2.85 -62.68 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 0.26 Total: 24.53 kcal Atomic # 6 Polarization: -41.32 SS G_CDS: 5.18 Total: -36.14 kcal Atomic # 7 Polarization: -99.47 SS G_CDS: -4.64 Total: -104.11 kcal Atomic # 14 Polarization: 51.00 SS G_CDS: 2.05 Total: 53.05 kcal Total: -65.52 2.85 -62.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072659604.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.247 kcal (2) G-P(sol) polarization free energy of solvation -65.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds