Wall clock time and date at job start Tue Mar 31 2020 11:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 C 1.53006 * 109.46711 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47445 * 59.99695 * 5 4 2 7 7 C 1.53002 * 109.47092 * 300.00075 * 6 5 4 8 8 H 1.09002 * 109.47067 * 299.99853 * 7 6 5 9 9 N 1.46902 * 109.46882 * 179.97438 * 7 6 5 10 10 C 1.46905 * 110.99602 * 84.99866 * 9 7 6 11 11 C 1.50699 * 109.46882 * 179.97438 * 10 9 7 12 12 C 1.38296 * 119.92335 * 269.72736 * 11 10 9 13 13 C 1.38099 * 120.07089 * 179.72701 * 12 11 10 14 14 C 1.38915 * 119.92607 * 0.54654 * 13 12 11 15 15 N 1.39671 * 120.07154 * 179.70454 * 14 13 12 16 16 C 1.46507 * 119.99779 * 180.02562 * 15 14 13 17 17 C 1.46495 * 120.00501 * 0.02592 * 15 14 13 18 18 C 1.50703 * 109.47563 * 89.99698 * 17 15 14 19 19 H 1.07999 * 119.99497 * 0.02562 * 18 17 15 20 20 C 1.37877 * 120.00232 * 179.97438 * 18 17 15 21 21 N 1.31515 * 119.99745 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47462 * 60.00473 * 22 20 18 24 24 H 1.48504 * 109.47275 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47567 * 300.00092 * 22 20 18 26 26 C 1.38910 * 119.85068 * 359.72955 * 14 13 12 27 27 C 1.38105 * 119.92423 * 359.97438 * 26 14 13 28 28 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 31 31 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 32 32 H 1.09002 * 109.47075 * 299.99262 * 4 2 1 33 33 H 1.08996 * 109.47407 * 60.00219 * 4 2 1 34 34 H 1.09001 * 109.46726 * 179.97438 * 5 4 2 35 35 H 1.09002 * 109.46589 * 299.99365 * 5 4 2 36 36 H 1.09002 * 109.47045 * 59.99942 * 6 5 4 37 37 H 1.09000 * 109.47140 * 179.97438 * 6 5 4 38 38 H 1.00897 * 111.00198 * 208.95124 * 9 7 6 39 39 H 1.08998 * 109.47420 * 299.99714 * 10 9 7 40 40 H 1.09000 * 109.46866 * 60.00292 * 10 9 7 41 41 H 1.07997 * 119.95899 * 359.97438 * 12 11 10 42 42 H 1.08003 * 120.03583 * 180.27580 * 13 12 11 43 43 H 1.09000 * 109.46648 * 90.00183 * 16 15 14 44 44 H 1.09003 * 109.47420 * 209.99986 * 16 15 14 45 45 H 1.09004 * 109.47295 * 330.00389 * 16 15 14 46 46 H 1.09004 * 109.47193 * 210.00320 * 17 15 14 47 47 H 1.09002 * 109.47089 * 329.99469 * 17 15 14 48 48 H 0.97003 * 119.99848 * 179.97438 * 21 20 18 49 49 H 1.07999 * 120.03620 * 180.02562 * 26 14 13 50 50 H 1.07993 * 119.96037 * 180.02562 * 27 26 14 51 51 H 1.09001 * 109.47194 * 299.99650 * 28 2 1 52 52 H 1.08992 * 109.47399 * 59.99823 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2490 6 6 4.0795 -1.4433 0.0002 7 6 3.5695 -0.7221 1.2495 8 1 3.9332 0.3055 1.2497 9 7 4.0582 -1.4153 2.4489 10 6 5.4058 -0.9554 2.8103 11 6 5.8724 -1.6865 4.0427 12 6 5.6137 -1.1616 5.2957 13 6 6.0350 -1.8319 6.4272 14 6 6.7292 -3.0290 6.3054 15 7 7.1621 -3.7063 7.4476 16 6 7.8946 -4.9684 7.3173 17 6 6.8837 -3.1549 8.7759 18 6 5.5617 -3.6817 9.2717 19 1 4.9866 -4.3599 8.6587 20 6 5.0868 -3.2988 10.5082 21 7 5.7875 -2.4734 11.2548 22 14 3.4485 -3.9525 11.1229 23 1 3.5056 -5.4341 11.2037 24 1 3.1662 -3.3934 12.4694 25 1 2.3709 -3.5491 10.1842 26 6 6.9924 -3.5505 5.0451 27 6 6.5629 -2.8781 3.9178 28 6 2.0400 -0.7213 1.2492 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3635 0.5138 -0.8899 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1393 34 1 3.9332 -1.2360 -2.1388 35 1 3.9336 0.3058 -1.2488 36 1 3.7158 -2.4709 0.0000 37 1 5.1695 -1.4441 0.0002 38 1 3.4177 -1.2993 3.2198 39 1 6.0913 -1.1561 1.9870 40 1 5.3825 0.1158 3.0108 41 1 5.0782 -0.2285 5.3894 42 1 5.8288 -1.4237 7.4056 43 1 8.9634 -4.7634 7.2559 44 1 7.6943 -5.5962 8.1856 45 1 7.5712 -5.4846 6.4133 46 1 7.6744 -3.4510 9.4653 47 1 6.8421 -2.0673 8.7164 48 1 5.4533 -2.2037 12.1246 49 1 7.5315 -4.4811 4.9469 50 1 6.7667 -3.2832 2.9378 51 1 1.6767 -0.2075 2.1392 52 1 1.6766 -1.7489 1.2492 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073650783.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:35 Heat of formation + Delta-G solvation = 2.704294 kcal Electronic energy + Delta-G solvation = -26031.606144 eV Core-core repulsion = 22608.355448 eV Total energy + Delta-G solvation = -3423.250696 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.41766 -38.83282 -36.27688 -34.77652 -32.73727 -32.36045 -30.72952 -30.41293 -28.34186 -27.76599 -26.61990 -25.49199 -23.89971 -22.47238 -22.16145 -21.46304 -20.75746 -19.97677 -19.49720 -16.69379 -16.47251 -15.81195 -15.48317 -15.18337 -14.94153 -14.63167 -14.52041 -14.35510 -14.16560 -13.69407 -13.50044 -13.33531 -13.07543 -12.84951 -12.59740 -12.53998 -12.30320 -12.10970 -11.94924 -11.80586 -11.53828 -11.38622 -11.34609 -11.23215 -11.11715 -10.95766 -10.81659 -10.69184 -10.64909 -10.32173 -10.26197 -10.23932 -9.87790 -9.74307 -8.82898 -8.50294 -8.33484 -8.22903 -6.45185 -6.01105 -4.17271 2.13664 2.25096 3.28180 3.32387 3.36002 4.08573 4.17710 4.41563 4.45823 4.49088 4.60161 4.81051 4.94874 5.00103 5.16515 5.21513 5.21911 5.27033 5.33281 5.40237 5.40913 5.41771 5.51809 5.59764 5.63573 5.66409 5.73288 5.80670 5.81476 5.84725 5.90988 6.01016 6.03144 6.07102 6.08801 6.09374 6.11492 6.29637 6.30552 6.42008 6.45649 6.67219 6.95233 7.04001 7.15806 7.23244 7.27538 7.35142 7.50736 7.62961 7.81183 8.15955 8.28045 8.50411 8.91713 9.49473 10.95720 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015026 B = 0.002550 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.996851 B =10976.161843 C =12264.271751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 H 0.067 0.933 4 C -0.114 4.114 5 C -0.120 4.120 6 C -0.106 4.106 7 C 0.087 3.913 8 H 0.039 0.961 9 N -0.683 5.683 10 C 0.117 3.883 11 C -0.173 4.173 12 C -0.068 4.068 13 C -0.187 4.187 14 C 0.241 3.759 15 N -0.616 5.616 16 C 0.098 3.902 17 C 0.249 3.751 18 C -0.531 4.531 19 H 0.059 0.941 20 C 0.061 3.939 21 N -0.896 5.896 22 Si 0.897 3.103 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.275 1.275 26 C -0.222 4.222 27 C -0.051 4.051 28 C -0.116 4.116 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.343 0.657 39 H 0.069 0.931 40 H 0.027 0.973 41 H 0.107 0.893 42 H 0.131 0.869 43 H 0.035 0.965 44 H 0.066 0.934 45 H 0.055 0.945 46 H 0.030 0.970 47 H 0.035 0.965 48 H 0.264 0.736 49 H 0.113 0.887 50 H 0.108 0.892 51 H 0.060 0.940 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.968 4.226 -22.517 23.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 H 0.085 0.915 4 C -0.151 4.151 5 C -0.158 4.158 6 C -0.144 4.144 7 C -0.022 4.022 8 H 0.057 0.943 9 N -0.314 5.314 10 C -0.011 4.011 11 C -0.175 4.175 12 C -0.087 4.087 13 C -0.210 4.210 14 C 0.134 3.866 15 N -0.322 5.322 16 C -0.046 4.046 17 C 0.129 3.871 18 C -0.570 4.570 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.535 5.535 22 Si 0.724 3.276 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.201 1.201 26 C -0.246 4.246 27 C -0.070 4.070 28 C -0.154 4.154 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.162 0.838 39 H 0.087 0.913 40 H 0.045 0.955 41 H 0.125 0.875 42 H 0.148 0.852 43 H 0.054 0.946 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.048 0.952 47 H 0.053 0.947 48 H 0.074 0.926 49 H 0.131 0.869 50 H 0.126 0.874 51 H 0.079 0.921 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.653 3.657 -22.452 23.039 hybrid contribution -1.127 0.461 0.960 1.551 sum -4.780 4.118 -21.492 22.398 Atomic orbital electron populations 1.21828 0.95233 1.01889 1.01537 1.21095 0.95393 0.99458 0.94889 0.91458 1.21603 0.95615 1.00728 0.97193 1.21547 0.95579 1.00636 0.98037 1.21519 1.00247 0.99858 0.92807 1.21502 0.94090 0.95332 0.91307 0.94310 1.60579 1.03833 1.59937 1.07055 1.20676 0.90047 0.95202 0.95209 1.19185 1.06582 0.98439 0.93343 1.20652 0.97928 0.98392 0.91750 1.20839 1.04482 0.96364 0.99299 1.17957 0.90966 0.90956 0.86724 1.47094 1.57557 1.22292 1.05218 1.21473 0.94664 0.86699 1.01741 1.19274 0.96027 0.94776 0.76977 1.21546 1.04968 1.28506 1.01979 0.92310 1.24963 0.97582 0.95017 0.96524 1.69923 1.38304 1.33654 1.11580 0.86576 0.83937 0.79209 0.77857 1.20234 1.21205 1.20085 1.20571 1.10165 1.02502 0.91326 1.20478 0.95900 0.93672 0.96997 1.21766 0.94708 1.01467 0.97452 0.92612 0.92709 0.92827 0.91876 0.92291 0.92014 0.92311 0.91324 0.92218 0.83837 0.91262 0.95472 0.87530 0.85158 0.94640 0.91481 0.92660 0.95231 0.94666 0.92602 0.86937 0.87370 0.92127 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.19 37.16 0.34 -0.70 16 2 C -0.09 -0.69 2.72 -90.62 -0.25 -0.94 16 3 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.11 -0.84 5.20 -26.73 -0.14 -0.98 16 5 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 6 C -0.11 -1.00 5.42 -26.73 -0.15 -1.14 16 7 C 0.09 0.87 2.49 -67.73 -0.17 0.71 16 8 H 0.04 0.40 7.80 -51.93 -0.41 0.00 16 9 N -0.68 -8.25 6.30 -108.01 -0.68 -8.93 16 10 C 0.12 1.49 5.61 -4.97 -0.03 1.46 16 11 C -0.17 -2.70 5.39 -104.59 -0.56 -3.26 16 12 C -0.07 -1.17 9.69 -39.61 -0.38 -1.55 16 13 C -0.19 -3.82 9.21 -39.38 -0.36 -4.18 16 14 C 0.24 4.94 6.55 -83.79 -0.55 4.39 16 15 N -0.62 -13.34 2.99 -180.99 -0.54 -13.88 16 16 C 0.10 1.75 10.19 59.85 0.61 2.36 16 17 C 0.25 6.29 4.91 -5.19 -0.03 6.26 16 18 C -0.53 -14.56 9.39 -34.44 -0.32 -14.88 16 19 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.90 -25.72 13.29 55.43 0.74 -24.99 16 22 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 C -0.22 -3.95 9.21 -39.38 -0.36 -4.31 16 27 C -0.05 -0.82 9.69 -39.61 -0.38 -1.21 16 28 C -0.12 -1.05 4.47 -26.76 -0.12 -1.17 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.59 7.46 -51.93 -0.39 0.20 16 38 H 0.34 4.28 8.34 -39.29 -0.33 3.95 16 39 H 0.07 0.84 7.38 -51.93 -0.38 0.46 16 40 H 0.03 0.34 7.99 -51.93 -0.42 -0.08 16 41 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 42 H 0.13 2.93 6.14 -52.48 -0.32 2.61 16 43 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 45 H 0.05 0.88 6.20 -51.93 -0.32 0.55 16 46 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 47 H 0.04 0.94 6.20 -51.93 -0.32 0.62 16 48 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 49 H 0.11 1.81 6.14 -52.49 -0.32 1.49 16 50 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 51 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 52 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 403.86 15.07 6.09 6.09 Total: -1.00 -28.31 403.86 -12.03 -40.34 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -9.51 Total: 3.63 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: -3.11 Total: -18.62 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: -0.49 Total: -47.80 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -28.31 -12.03 -40.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073650783.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.049 kcal (2) G-P(sol) polarization free energy of solvation -28.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds