Wall clock time and date at job start Tue Mar 31 2020 11:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 C 1.53006 * 109.46711 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47445 * 59.99695 * 5 4 2 7 7 C 1.53002 * 109.47092 * 300.00075 * 6 5 4 8 8 H 1.09002 * 109.47067 * 299.99853 * 7 6 5 9 9 N 1.46902 * 109.46882 * 179.97438 * 7 6 5 10 10 C 1.46905 * 110.99602 * 84.99866 * 9 7 6 11 11 C 1.50699 * 109.46882 * 179.97438 * 10 9 7 12 12 C 1.38296 * 119.92335 * 269.72736 * 11 10 9 13 13 C 1.38099 * 120.07089 * 179.72701 * 12 11 10 14 14 C 1.38915 * 119.92607 * 0.54654 * 13 12 11 15 15 N 1.39671 * 120.07154 * 179.70454 * 14 13 12 16 16 C 1.46507 * 119.99779 * 180.02562 * 15 14 13 17 17 C 1.46495 * 120.00501 * 0.02592 * 15 14 13 18 18 C 1.50703 * 109.47563 * 89.99698 * 17 15 14 19 19 H 1.07999 * 119.99497 * 0.02562 * 18 17 15 20 20 C 1.37877 * 120.00232 * 179.97438 * 18 17 15 21 21 N 1.31515 * 119.99745 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47462 * 60.00473 * 22 20 18 24 24 H 1.48504 * 109.47275 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47567 * 300.00092 * 22 20 18 26 26 C 1.38910 * 119.85068 * 359.72955 * 14 13 12 27 27 C 1.38105 * 119.92423 * 359.97438 * 26 14 13 28 28 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 31 31 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 32 32 H 1.09002 * 109.47075 * 299.99262 * 4 2 1 33 33 H 1.08996 * 109.47407 * 60.00219 * 4 2 1 34 34 H 1.09001 * 109.46726 * 179.97438 * 5 4 2 35 35 H 1.09002 * 109.46589 * 299.99365 * 5 4 2 36 36 H 1.09002 * 109.47045 * 59.99942 * 6 5 4 37 37 H 1.09000 * 109.47140 * 179.97438 * 6 5 4 38 38 H 1.00897 * 111.00198 * 208.95124 * 9 7 6 39 39 H 1.08998 * 109.47420 * 299.99714 * 10 9 7 40 40 H 1.09000 * 109.46866 * 60.00292 * 10 9 7 41 41 H 1.07997 * 119.95899 * 359.97438 * 12 11 10 42 42 H 1.08003 * 120.03583 * 180.27580 * 13 12 11 43 43 H 1.09000 * 109.46648 * 90.00183 * 16 15 14 44 44 H 1.09003 * 109.47420 * 209.99986 * 16 15 14 45 45 H 1.09004 * 109.47295 * 330.00389 * 16 15 14 46 46 H 1.09004 * 109.47193 * 210.00320 * 17 15 14 47 47 H 1.09002 * 109.47089 * 329.99469 * 17 15 14 48 48 H 0.97003 * 119.99848 * 179.97438 * 21 20 18 49 49 H 1.07999 * 120.03620 * 180.02562 * 26 14 13 50 50 H 1.07993 * 119.96037 * 180.02562 * 27 26 14 51 51 H 1.09001 * 109.47194 * 299.99650 * 28 2 1 52 52 H 1.08992 * 109.47399 * 59.99823 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2490 6 6 4.0795 -1.4433 0.0002 7 6 3.5695 -0.7221 1.2495 8 1 3.9332 0.3055 1.2497 9 7 4.0582 -1.4153 2.4489 10 6 5.4058 -0.9554 2.8103 11 6 5.8724 -1.6865 4.0427 12 6 5.6137 -1.1616 5.2957 13 6 6.0350 -1.8319 6.4272 14 6 6.7292 -3.0290 6.3054 15 7 7.1621 -3.7063 7.4476 16 6 7.8946 -4.9684 7.3173 17 6 6.8837 -3.1549 8.7759 18 6 5.5617 -3.6817 9.2717 19 1 4.9866 -4.3599 8.6587 20 6 5.0868 -3.2988 10.5082 21 7 5.7875 -2.4734 11.2548 22 14 3.4485 -3.9525 11.1229 23 1 3.5056 -5.4341 11.2037 24 1 3.1662 -3.3934 12.4694 25 1 2.3709 -3.5491 10.1842 26 6 6.9924 -3.5505 5.0451 27 6 6.5629 -2.8781 3.9178 28 6 2.0400 -0.7213 1.2492 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3635 0.5138 -0.8899 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1393 34 1 3.9332 -1.2360 -2.1388 35 1 3.9336 0.3058 -1.2488 36 1 3.7158 -2.4709 0.0000 37 1 5.1695 -1.4441 0.0002 38 1 3.4177 -1.2993 3.2198 39 1 6.0913 -1.1561 1.9870 40 1 5.3825 0.1158 3.0108 41 1 5.0782 -0.2285 5.3894 42 1 5.8288 -1.4237 7.4056 43 1 8.9634 -4.7634 7.2559 44 1 7.6943 -5.5962 8.1856 45 1 7.5712 -5.4846 6.4133 46 1 7.6744 -3.4510 9.4653 47 1 6.8421 -2.0673 8.7164 48 1 5.4533 -2.2037 12.1246 49 1 7.5315 -4.4811 4.9469 50 1 6.7667 -3.2832 2.9378 51 1 1.6767 -0.2075 2.1392 52 1 1.6766 -1.7489 1.2492 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073650783.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:34 Heat of formation + Delta-G solvation = -10.504549 kcal Electronic energy + Delta-G solvation = -26032.178923 eV Core-core repulsion = 22608.355448 eV Total energy + Delta-G solvation = -3423.823475 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.53595 -39.88583 -37.64166 -35.91219 -34.71669 -33.07201 -31.88348 -31.84484 -29.74946 -29.28127 -27.24665 -26.94507 -25.48700 -23.66433 -23.14364 -22.93496 -21.51301 -21.04596 -20.56029 -18.63588 -18.13587 -17.04115 -16.60422 -16.33246 -16.18029 -15.75950 -15.61722 -15.36317 -15.18679 -15.16286 -14.75214 -14.49498 -14.29600 -14.08108 -14.01087 -13.42067 -13.31349 -13.22752 -13.16508 -13.09405 -13.01387 -12.69753 -12.64577 -12.53088 -12.21686 -12.18352 -12.09463 -11.91915 -11.77854 -11.75906 -11.41561 -11.33690 -11.07968 -10.90927 -10.64443 -10.39204 -9.66527 -9.26620 -8.36346 -7.80063 -6.37801 0.71207 0.84567 1.36835 1.38700 1.47020 2.33997 2.63578 3.00629 3.05797 3.44187 3.79748 3.82388 4.05335 4.10847 4.14273 4.24369 4.30112 4.32576 4.41386 4.49375 4.52219 4.58507 4.62833 4.65637 4.71230 4.72302 4.74993 4.81280 4.86761 4.89833 4.94288 5.01242 5.02395 5.12419 5.14078 5.19784 5.20552 5.21898 5.33575 5.37669 5.39367 5.42738 5.45225 5.59055 5.62597 5.68716 5.70019 5.93218 6.06953 6.18313 6.27001 6.49995 6.51382 6.82379 6.93798 7.33986 8.82799 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015026 B = 0.002550 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.996851 B =10976.161843 C =12264.271751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 H 0.069 0.931 4 C -0.112 4.112 5 C -0.117 4.117 6 C -0.103 4.103 7 C 0.089 3.911 8 H 0.040 0.960 9 N -0.690 5.690 10 C 0.123 3.877 11 C -0.158 4.158 12 C -0.068 4.068 13 C -0.215 4.215 14 C 0.212 3.788 15 N -0.632 5.632 16 C 0.098 3.902 17 C 0.267 3.733 18 C -0.541 4.541 19 H 0.048 0.952 20 C 0.012 3.988 21 N -0.927 5.927 22 Si 0.961 3.039 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.273 1.273 26 C -0.217 4.217 27 C -0.049 4.049 28 C -0.113 4.113 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.339 0.661 39 H 0.082 0.918 40 H 0.034 0.966 41 H 0.122 0.878 42 H 0.095 0.905 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.078 0.922 46 H 0.009 0.991 47 H 0.011 0.989 48 H 0.267 0.733 49 H 0.132 0.868 50 H 0.139 0.861 51 H 0.057 0.943 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.843 3.959 -25.311 26.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 H 0.087 0.913 4 C -0.150 4.150 5 C -0.155 4.155 6 C -0.142 4.142 7 C -0.020 4.020 8 H 0.058 0.942 9 N -0.321 5.321 10 C -0.006 4.006 11 C -0.161 4.161 12 C -0.088 4.088 13 C -0.238 4.238 14 C 0.107 3.893 15 N -0.340 5.340 16 C -0.045 4.045 17 C 0.145 3.855 18 C -0.580 4.580 19 H 0.067 0.933 20 C -0.187 4.187 21 N -0.566 5.566 22 Si 0.786 3.214 23 H -0.194 1.194 24 H -0.203 1.203 25 H -0.198 1.198 26 C -0.240 4.240 27 C -0.068 4.068 28 C -0.151 4.151 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.157 0.843 39 H 0.101 0.899 40 H 0.052 0.948 41 H 0.140 0.860 42 H 0.113 0.887 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.096 0.904 46 H 0.027 0.973 47 H 0.029 0.971 48 H 0.076 0.924 49 H 0.150 0.850 50 H 0.156 0.844 51 H 0.076 0.924 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.522 3.387 -25.290 25.914 hybrid contribution -0.850 0.602 1.699 1.993 sum -5.372 3.989 -23.591 24.522 Atomic orbital electron populations 1.21815 0.94721 1.01888 1.01944 1.21080 0.95817 0.99326 0.94367 0.91299 1.21593 0.95366 1.00604 0.97393 1.21527 0.95758 1.00700 0.97470 1.21491 1.00047 0.99390 0.93224 1.21542 0.94622 0.95199 0.90618 0.94187 1.60586 1.03451 1.60476 1.07567 1.20639 0.90719 0.95143 0.94069 1.19525 1.04789 0.98081 0.93721 1.20821 0.97604 0.98780 0.91551 1.20747 1.06636 0.97576 0.98840 1.18229 0.92263 0.91411 0.87402 1.46964 1.59150 1.23778 1.04123 1.21602 0.95341 0.85236 1.02320 1.18766 0.94544 0.93350 0.78831 1.21740 1.05793 1.28313 1.02169 0.93343 1.25783 1.01067 0.95165 0.96675 1.70032 1.39980 1.34663 1.11960 0.85559 0.79513 0.78881 0.77449 1.19375 1.20345 1.19829 1.20805 1.09656 1.03125 0.90422 1.20856 0.94811 0.93378 0.97754 1.21731 0.94086 1.01093 0.98156 0.92819 0.92904 0.91859 0.92247 0.91136 0.91158 0.91926 0.92348 0.92451 0.84271 0.89930 0.94775 0.86021 0.88694 0.92905 0.92534 0.90382 0.97291 0.97139 0.92373 0.85024 0.84361 0.92438 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.19 71.98 0.66 -1.14 16 2 C -0.09 -1.17 2.72 -10.79 -0.03 -1.20 16 3 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 4 C -0.11 -1.39 5.20 30.60 0.16 -1.23 16 5 C -0.12 -1.51 5.92 30.60 0.18 -1.33 16 6 C -0.10 -1.71 5.42 30.59 0.17 -1.54 16 7 C 0.09 1.61 2.49 44.90 0.11 1.72 16 8 H 0.04 0.73 7.80 -2.39 -0.02 0.71 16 9 N -0.69 -15.24 6.30 -495.64 -3.12 -18.37 16 10 C 0.12 2.81 5.61 85.56 0.48 3.29 16 11 C -0.16 -4.65 5.39 -19.84 -0.11 -4.75 16 12 C -0.07 -2.34 9.69 22.25 0.22 -2.12 16 13 C -0.22 -9.13 9.21 22.40 0.21 -8.92 16 14 C 0.21 8.81 6.55 38.22 0.25 9.06 16 15 N -0.63 -28.20 2.99 -726.53 -2.17 -30.38 16 16 C 0.10 3.47 10.19 127.77 1.30 4.77 16 17 C 0.27 14.22 4.91 85.63 0.42 14.64 16 18 C -0.54 -30.79 9.39 25.60 0.24 -30.55 16 19 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 20 C 0.01 0.70 5.46 84.65 0.46 1.16 16 21 N -0.93 -54.83 13.29 21.45 0.28 -54.54 16 22 Si 0.96 44.44 29.54 68.60 2.03 46.47 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 26 C -0.22 -7.37 9.21 22.40 0.21 -7.16 16 27 C -0.05 -1.44 9.69 22.25 0.22 -1.23 16 28 C -0.11 -1.87 4.47 30.58 0.14 -1.73 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.06 0.97 7.46 -2.39 -0.02 0.96 16 38 H 0.34 7.95 8.34 -89.70 -0.75 7.20 16 39 H 0.08 1.72 7.38 -2.39 -0.02 1.70 16 40 H 0.03 0.75 7.99 -2.39 -0.02 0.73 16 41 H 0.12 3.68 8.06 -2.91 -0.02 3.66 16 42 H 0.09 4.64 6.14 -2.91 -0.02 4.62 16 43 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.06 2.08 8.07 -2.39 -0.02 2.06 16 45 H 0.08 2.36 6.20 -2.39 -0.01 2.35 16 46 H 0.01 0.51 8.07 -2.39 -0.02 0.49 16 47 H 0.01 0.61 6.20 -2.39 -0.01 0.60 16 48 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 49 H 0.13 3.89 6.14 -2.91 -0.02 3.87 16 50 H 0.14 3.29 8.06 -2.91 -0.02 3.26 16 51 H 0.06 0.98 8.12 -2.39 -0.02 0.96 16 52 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -62.43 403.86 2.42 -60.01 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: 0.12 Total: 25.07 kcal Atomic # 6 Polarization: -33.55 SS G_CDS: 5.28 Total: -28.27 kcal Atomic # 7 Polarization: -98.27 SS G_CDS: -5.01 Total: -103.28 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -62.43 2.42 -60.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073650783.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.507 kcal (2) G-P(sol) polarization free energy of solvation -62.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds