Wall clock time and date at job start Tue Mar 31 2020 11:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47391 * 2 1 4 4 C 1.53002 * 109.47321 * 120.00413 * 2 1 3 5 5 C 1.53006 * 109.47290 * 59.99521 * 4 2 1 6 6 C 1.53001 * 109.47000 * 60.00024 * 5 4 2 7 7 C 1.53004 * 109.47395 * 300.00303 * 6 5 4 8 8 H 1.09003 * 109.46839 * 299.99869 * 7 6 5 9 9 N 1.46898 * 109.47470 * 179.97438 * 7 6 5 10 10 C 1.46897 * 110.99995 * 84.99465 * 9 7 6 11 11 C 1.50697 * 109.47541 * 180.02562 * 10 9 7 12 12 C 1.38285 * 119.92401 * 89.99784 * 11 10 9 13 13 C 1.38108 * 120.07354 * 180.02562 * 12 11 10 14 14 C 1.38915 * 119.92598 * 0.02562 * 13 12 11 15 15 N 1.39668 * 120.07520 * 179.97438 * 14 13 12 16 16 C 1.46502 * 120.00128 * 359.97438 * 15 14 13 17 17 C 1.46499 * 120.00213 * 179.97438 * 15 14 13 18 18 C 1.50701 * 109.46992 * 269.99719 * 17 15 14 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 15 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 15 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47294 * 60.00559 * 22 20 18 24 24 H 1.48503 * 109.46954 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47431 * 300.00157 * 22 20 18 26 26 C 1.38909 * 119.84783 * 0.24869 * 14 13 12 27 27 C 1.38106 * 119.92498 * 359.49656 * 26 14 13 28 28 C 1.52995 * 109.47106 * 59.99542 * 7 6 5 29 29 H 1.09001 * 109.46614 * 299.99748 * 1 2 3 30 30 H 1.09000 * 109.47278 * 59.99635 * 1 2 3 31 31 H 1.09000 * 109.47247 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46797 * 299.99858 * 4 2 1 33 33 H 1.09003 * 109.47159 * 179.97438 * 4 2 1 34 34 H 1.08995 * 109.46764 * 300.00664 * 5 4 2 35 35 H 1.09000 * 109.47273 * 180.02562 * 5 4 2 36 36 H 1.09000 * 109.46982 * 179.97438 * 6 5 4 37 37 H 1.09003 * 109.47020 * 60.00061 * 6 5 4 38 38 H 1.00902 * 110.99470 * 321.04829 * 9 7 6 39 39 H 1.09002 * 109.46782 * 60.00383 * 10 9 7 40 40 H 1.09004 * 109.47622 * 300.00628 * 10 9 7 41 41 H 1.07997 * 119.96466 * 0.05545 * 12 11 10 42 42 H 1.07999 * 120.03543 * 179.97438 * 13 12 11 43 43 H 1.08996 * 109.47461 * 270.00413 * 16 15 14 44 44 H 1.08998 * 109.46888 * 30.00182 * 16 15 14 45 45 H 1.08994 * 109.47490 * 150.00244 * 16 15 14 46 46 H 1.09002 * 109.47391 * 149.99710 * 17 15 14 47 47 H 1.09001 * 109.46813 * 29.99766 * 17 15 14 48 48 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 49 49 H 1.08004 * 120.03453 * 179.72289 * 26 14 13 50 50 H 1.08008 * 119.96053 * 180.24920 * 27 26 14 51 51 H 1.09003 * 109.47005 * 60.00428 * 28 7 6 52 52 H 1.09002 * 109.47090 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5300 -2.1639 1.2492 6 6 2.0399 -2.8851 -0.0001 7 6 1.5299 -2.1638 -1.2494 8 1 0.4399 -2.1637 -1.2493 9 7 2.0200 -2.8559 -2.4489 10 6 1.1368 -3.9727 -2.8100 11 6 1.6706 -4.6575 -4.0417 12 6 2.5630 -5.7063 -3.9159 13 6 3.0546 -6.3357 -5.0426 14 6 2.6521 -5.9137 -6.3034 15 7 3.1477 -6.5476 -7.4450 16 6 4.0937 -7.6585 -7.3137 17 6 2.7217 -6.1016 -8.7738 18 6 1.4919 -6.8668 -9.1902 19 1 1.0697 -7.6106 -8.5307 20 6 0.9053 -6.6166 -10.4126 21 7 1.4191 -5.7105 -11.2154 22 14 -0.6194 -7.5646 -10.9283 23 1 -1.7095 -7.3188 -9.9502 24 1 -1.0512 -7.1126 -12.2753 25 1 -0.3094 -9.0163 -10.9696 26 6 1.7599 -4.8561 -6.4263 27 6 1.2682 -4.2346 -5.2953 28 6 2.0399 -0.7213 -1.2493 29 1 -0.3632 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.6768 -0.2075 2.1392 33 1 3.1301 -0.7217 1.2489 34 1 0.4401 -2.1638 1.2492 35 1 1.8930 -2.6776 2.1394 36 1 1.6769 -3.9129 0.0001 37 1 3.1299 -2.8851 -0.0002 38 1 2.9695 -3.1725 -2.3210 39 1 0.1347 -3.5934 -3.0103 40 1 1.0974 -4.6859 -1.9865 41 1 2.8755 -6.0339 -2.9354 42 1 3.7519 -7.1545 -4.9436 43 1 5.1120 -7.2701 -7.3094 44 1 3.9034 -8.1893 -6.3808 45 1 3.9693 -8.3428 -8.1529 46 1 3.5220 -6.2818 -9.4915 47 1 2.4938 -5.0361 -8.7437 48 1 1.0066 -5.5347 -12.0755 49 1 1.4484 -4.5226 -7.4052 50 1 0.5713 -3.4148 -5.3901 51 1 3.1299 -0.7213 -1.2493 52 1 1.6770 -0.2076 -2.1395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073650785.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:38 Heat of formation + Delta-G solvation = 6.761031 kcal Electronic energy + Delta-G solvation = -26127.364928 eV Core-core repulsion = 22704.290145 eV Total energy + Delta-G solvation = -3423.074783 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.68431 -38.89469 -36.29709 -34.76659 -32.70793 -31.85006 -30.71172 -30.41020 -28.29588 -27.77113 -26.98722 -25.47249 -23.93308 -22.52436 -22.15606 -21.65933 -21.47662 -19.61104 -18.83495 -16.74945 -16.48709 -16.24715 -15.45153 -15.17314 -14.81705 -14.66978 -14.35011 -14.13177 -14.05181 -13.80332 -13.63080 -13.35711 -13.02478 -12.87258 -12.85192 -12.67186 -12.21315 -12.12805 -11.91176 -11.79395 -11.60962 -11.40203 -11.28653 -11.23141 -11.18342 -10.96446 -10.84213 -10.66444 -10.57258 -10.42153 -10.26275 -10.13640 -9.87993 -9.75045 -8.82924 -8.49559 -8.29026 -8.22681 -6.44969 -6.00569 -4.16589 2.14008 2.24605 3.28428 3.32835 3.36120 4.12577 4.17021 4.42004 4.43145 4.51283 4.60751 4.81892 4.89593 4.96896 5.08986 5.13007 5.22227 5.25939 5.31895 5.36308 5.39315 5.45684 5.54857 5.58694 5.64003 5.66202 5.73144 5.76602 5.81550 5.85865 5.91283 5.92759 5.98652 6.04693 6.07594 6.10179 6.21553 6.26280 6.29219 6.42370 6.46517 6.66383 6.95062 7.02838 7.14180 7.20841 7.29220 7.39824 7.48669 7.63247 7.81707 8.16524 8.28294 8.50610 8.92110 9.50055 10.96510 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.021191 B = 0.002314 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.017633 B =12098.707808 C =12738.565914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 H 0.068 0.932 4 C -0.114 4.114 5 C -0.117 4.117 6 C -0.149 4.149 7 C 0.086 3.914 8 H 0.078 0.922 9 N -0.680 5.680 10 C 0.116 3.884 11 C -0.172 4.172 12 C -0.068 4.068 13 C -0.222 4.222 14 C 0.242 3.758 15 N -0.616 5.616 16 C 0.099 3.901 17 C 0.249 3.751 18 C -0.532 4.532 19 H 0.058 0.942 20 C 0.061 3.939 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.277 1.277 26 C -0.188 4.188 27 C -0.051 4.051 28 C -0.101 4.101 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.340 0.660 39 H 0.070 0.930 40 H 0.027 0.973 41 H 0.104 0.896 42 H 0.112 0.888 43 H 0.035 0.965 44 H 0.054 0.946 45 H 0.066 0.934 46 H 0.030 0.970 47 H 0.036 0.964 48 H 0.264 0.736 49 H 0.131 0.869 50 H 0.111 0.889 51 H 0.060 0.940 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.781 7.589 23.110 24.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 H 0.087 0.913 4 C -0.152 4.152 5 C -0.155 4.155 6 C -0.188 4.188 7 C -0.024 4.024 8 H 0.096 0.904 9 N -0.310 5.310 10 C -0.012 4.012 11 C -0.175 4.175 12 C -0.088 4.088 13 C -0.245 4.245 14 C 0.134 3.866 15 N -0.322 5.322 16 C -0.046 4.046 17 C 0.129 3.871 18 C -0.570 4.570 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.203 1.203 26 C -0.211 4.211 27 C -0.070 4.070 28 C -0.139 4.139 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.158 0.842 39 H 0.088 0.912 40 H 0.045 0.955 41 H 0.122 0.878 42 H 0.130 0.870 43 H 0.054 0.946 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.048 0.952 47 H 0.054 0.946 48 H 0.074 0.926 49 H 0.149 0.851 50 H 0.129 0.871 51 H 0.079 0.921 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.545 7.999 22.243 23.688 hybrid contribution -0.582 -1.301 0.245 1.447 sum 0.962 6.698 22.487 23.483 Atomic orbital electron populations 1.21942 0.95412 1.02046 1.01428 1.21112 0.95925 0.99083 0.94959 0.91322 1.21571 1.00494 0.95592 0.97534 1.21507 1.00957 0.95614 0.97435 1.22286 1.01059 0.99417 0.96043 1.21638 0.99669 0.93756 0.87380 0.90427 1.60671 1.05940 1.29226 1.35115 1.20665 0.96085 0.90548 0.93900 1.19185 1.04063 1.00285 0.93972 1.20493 0.96098 0.95303 0.96883 1.20512 1.07794 1.04919 0.91317 1.17954 0.91121 0.90798 0.86691 1.47096 1.45850 1.33923 1.05295 1.21464 0.91630 0.89843 1.01617 1.19281 0.94954 0.95864 0.76969 1.21539 1.11516 1.21882 1.02110 0.92345 1.24964 0.97523 0.95291 0.96311 1.69921 1.40653 1.32573 1.10229 0.86579 0.83178 0.80159 0.77666 1.20095 1.21184 1.20270 1.20899 1.01800 0.98869 0.99503 1.20640 0.97586 0.97416 0.91365 1.21517 1.00539 0.94673 0.97209 0.93100 0.92633 0.92158 0.92267 0.92108 0.91731 0.92399 0.92249 0.91935 0.84177 0.91165 0.95509 0.87840 0.87011 0.94646 0.92738 0.91480 0.95227 0.94586 0.92587 0.85111 0.87061 0.92130 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.50 37.16 0.32 -0.79 16 2 C -0.09 -0.69 3.20 -90.62 -0.29 -0.98 16 3 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.11 -0.80 5.45 -26.73 -0.15 -0.94 16 5 C -0.12 -0.85 5.65 -26.73 -0.15 -1.00 16 6 C -0.15 -1.24 5.17 -26.73 -0.14 -1.38 16 7 C 0.09 0.81 2.19 -67.71 -0.15 0.66 16 8 H 0.08 0.77 6.09 -51.93 -0.32 0.45 16 9 N -0.68 -7.83 6.24 -107.99 -0.67 -8.50 16 10 C 0.12 1.46 5.61 -4.98 -0.03 1.43 16 11 C -0.17 -2.68 5.39 -104.59 -0.56 -3.24 16 12 C -0.07 -1.06 9.69 -39.61 -0.38 -1.45 16 13 C -0.22 -3.89 9.21 -39.38 -0.36 -4.26 16 14 C 0.24 4.95 6.55 -83.79 -0.55 4.40 16 15 N -0.62 -13.34 2.99 -181.00 -0.54 -13.88 16 16 C 0.10 1.75 10.19 59.85 0.61 2.36 16 17 C 0.25 6.30 4.92 -5.19 -0.03 6.28 16 18 C -0.53 -14.59 9.39 -34.44 -0.32 -14.91 16 19 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -25.76 13.29 55.43 0.74 -25.03 16 22 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 C -0.19 -3.87 9.21 -39.38 -0.36 -4.24 16 27 C -0.05 -0.89 9.69 -39.61 -0.38 -1.28 16 28 C -0.10 -0.91 5.06 -26.73 -0.14 -1.04 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.45 4.81 -51.93 -0.25 0.21 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.52 7.46 -51.93 -0.39 0.13 16 37 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 38 H 0.34 3.88 8.46 -39.29 -0.33 3.55 16 39 H 0.07 0.89 8.00 -51.93 -0.42 0.47 16 40 H 0.03 0.31 7.38 -51.93 -0.38 -0.07 16 41 H 0.10 1.34 8.06 -52.49 -0.42 0.92 16 42 H 0.11 1.77 6.14 -52.49 -0.32 1.45 16 43 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.86 6.20 -51.93 -0.32 0.53 16 45 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 46 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 47 H 0.04 0.96 6.18 -51.93 -0.32 0.64 16 48 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 49 H 0.13 2.97 6.14 -52.48 -0.32 2.65 16 50 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 51 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 52 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 396.96 15.07 5.98 5.98 Total: -1.00 -28.30 396.96 -11.84 -40.14 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -9.16 Total: 3.68 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: -3.16 Total: -18.77 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: -0.48 Total: -47.41 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -28.30 -11.84 -40.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073650785.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.904 kcal (2) G-P(sol) polarization free energy of solvation -28.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds