Wall clock time and date at job start Tue Mar 31 2020 11:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47391 * 2 1 4 4 C 1.53002 * 109.47321 * 120.00413 * 2 1 3 5 5 C 1.53006 * 109.47290 * 59.99521 * 4 2 1 6 6 C 1.53001 * 109.47000 * 60.00024 * 5 4 2 7 7 C 1.53004 * 109.47395 * 300.00303 * 6 5 4 8 8 H 1.09003 * 109.46839 * 299.99869 * 7 6 5 9 9 N 1.46898 * 109.47470 * 179.97438 * 7 6 5 10 10 C 1.46897 * 110.99995 * 84.99465 * 9 7 6 11 11 C 1.50697 * 109.47541 * 180.02562 * 10 9 7 12 12 C 1.38285 * 119.92401 * 89.99784 * 11 10 9 13 13 C 1.38108 * 120.07354 * 180.02562 * 12 11 10 14 14 C 1.38915 * 119.92598 * 0.02562 * 13 12 11 15 15 N 1.39668 * 120.07520 * 179.97438 * 14 13 12 16 16 C 1.46502 * 120.00128 * 359.97438 * 15 14 13 17 17 C 1.46499 * 120.00213 * 179.97438 * 15 14 13 18 18 C 1.50701 * 109.46992 * 269.99719 * 17 15 14 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 15 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 15 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47294 * 60.00559 * 22 20 18 24 24 H 1.48503 * 109.46954 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47431 * 300.00157 * 22 20 18 26 26 C 1.38909 * 119.84783 * 0.24869 * 14 13 12 27 27 C 1.38106 * 119.92498 * 359.49656 * 26 14 13 28 28 C 1.52995 * 109.47106 * 59.99542 * 7 6 5 29 29 H 1.09001 * 109.46614 * 299.99748 * 1 2 3 30 30 H 1.09000 * 109.47278 * 59.99635 * 1 2 3 31 31 H 1.09000 * 109.47247 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46797 * 299.99858 * 4 2 1 33 33 H 1.09003 * 109.47159 * 179.97438 * 4 2 1 34 34 H 1.08995 * 109.46764 * 300.00664 * 5 4 2 35 35 H 1.09000 * 109.47273 * 180.02562 * 5 4 2 36 36 H 1.09000 * 109.46982 * 179.97438 * 6 5 4 37 37 H 1.09003 * 109.47020 * 60.00061 * 6 5 4 38 38 H 1.00902 * 110.99470 * 321.04829 * 9 7 6 39 39 H 1.09002 * 109.46782 * 60.00383 * 10 9 7 40 40 H 1.09004 * 109.47622 * 300.00628 * 10 9 7 41 41 H 1.07997 * 119.96466 * 0.05545 * 12 11 10 42 42 H 1.07999 * 120.03543 * 179.97438 * 13 12 11 43 43 H 1.08996 * 109.47461 * 270.00413 * 16 15 14 44 44 H 1.08998 * 109.46888 * 30.00182 * 16 15 14 45 45 H 1.08994 * 109.47490 * 150.00244 * 16 15 14 46 46 H 1.09002 * 109.47391 * 149.99710 * 17 15 14 47 47 H 1.09001 * 109.46813 * 29.99766 * 17 15 14 48 48 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 49 49 H 1.08004 * 120.03453 * 179.72289 * 26 14 13 50 50 H 1.08008 * 119.96053 * 180.24920 * 27 26 14 51 51 H 1.09003 * 109.47005 * 60.00428 * 28 7 6 52 52 H 1.09002 * 109.47090 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5300 -2.1639 1.2492 6 6 2.0399 -2.8851 -0.0001 7 6 1.5299 -2.1638 -1.2494 8 1 0.4399 -2.1637 -1.2493 9 7 2.0200 -2.8559 -2.4489 10 6 1.1368 -3.9727 -2.8100 11 6 1.6706 -4.6575 -4.0417 12 6 2.5630 -5.7063 -3.9159 13 6 3.0546 -6.3357 -5.0426 14 6 2.6521 -5.9137 -6.3034 15 7 3.1477 -6.5476 -7.4450 16 6 4.0937 -7.6585 -7.3137 17 6 2.7217 -6.1016 -8.7738 18 6 1.4919 -6.8668 -9.1902 19 1 1.0697 -7.6106 -8.5307 20 6 0.9053 -6.6166 -10.4126 21 7 1.4191 -5.7105 -11.2154 22 14 -0.6194 -7.5646 -10.9283 23 1 -1.7095 -7.3188 -9.9502 24 1 -1.0512 -7.1126 -12.2753 25 1 -0.3094 -9.0163 -10.9696 26 6 1.7599 -4.8561 -6.4263 27 6 1.2682 -4.2346 -5.2953 28 6 2.0399 -0.7213 -1.2493 29 1 -0.3632 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.6768 -0.2075 2.1392 33 1 3.1301 -0.7217 1.2489 34 1 0.4401 -2.1638 1.2492 35 1 1.8930 -2.6776 2.1394 36 1 1.6769 -3.9129 0.0001 37 1 3.1299 -2.8851 -0.0002 38 1 2.9695 -3.1725 -2.3210 39 1 0.1347 -3.5934 -3.0103 40 1 1.0974 -4.6859 -1.9865 41 1 2.8755 -6.0339 -2.9354 42 1 3.7519 -7.1545 -4.9436 43 1 5.1120 -7.2701 -7.3094 44 1 3.9034 -8.1893 -6.3808 45 1 3.9693 -8.3428 -8.1529 46 1 3.5220 -6.2818 -9.4915 47 1 2.4938 -5.0361 -8.7437 48 1 1.0066 -5.5347 -12.0755 49 1 1.4484 -4.5226 -7.4052 50 1 0.5713 -3.4148 -5.3901 51 1 3.1299 -0.7213 -1.2493 52 1 1.6770 -0.2076 -2.1395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073650785.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:37 Heat of formation + Delta-G solvation = -6.789572 kcal Electronic energy + Delta-G solvation = -26127.952526 eV Core-core repulsion = 22704.290145 eV Total energy + Delta-G solvation = -3423.662381 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.60161 -40.10165 -37.65468 -35.90140 -34.71003 -32.52166 -31.87954 -31.80109 -29.71952 -29.25030 -27.58339 -26.91642 -25.50631 -23.62510 -23.14400 -22.97988 -22.40238 -21.04933 -19.51514 -18.63544 -18.11931 -17.16180 -16.90646 -16.36753 -16.04922 -15.74761 -15.47259 -15.34924 -15.13092 -14.94876 -14.68645 -14.45546 -14.28420 -14.17920 -13.96485 -13.75156 -13.37740 -13.20930 -13.12487 -13.08004 -12.99740 -12.67804 -12.57219 -12.52733 -12.40897 -12.21223 -11.95420 -11.89152 -11.80914 -11.75290 -11.41930 -11.26541 -11.06229 -10.83896 -10.64290 -10.38998 -9.65976 -9.15297 -8.35956 -7.79680 -6.37654 0.71939 0.84924 1.36761 1.38889 1.47151 2.34110 2.63923 3.02770 3.06091 3.49648 3.79573 3.89006 4.05581 4.12877 4.14637 4.22966 4.30098 4.33306 4.43708 4.45318 4.48267 4.53548 4.66207 4.67334 4.72166 4.73883 4.77496 4.86492 4.87838 4.90811 4.96881 5.02373 5.04991 5.13009 5.15554 5.16893 5.21145 5.24782 5.29855 5.33576 5.37613 5.46594 5.53506 5.59652 5.64988 5.67153 5.70177 5.95102 6.07032 6.19301 6.28580 6.50311 6.59445 6.82495 6.94327 7.34058 8.83169 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.021191 B = 0.002314 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.017633 B =12098.707808 C =12738.565914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.089 4.089 3 H 0.072 0.928 4 C -0.112 4.112 5 C -0.115 4.115 6 C -0.143 4.143 7 C 0.089 3.911 8 H 0.074 0.926 9 N -0.690 5.690 10 C 0.123 3.877 11 C -0.158 4.158 12 C -0.061 4.061 13 C -0.216 4.216 14 C 0.212 3.788 15 N -0.633 5.633 16 C 0.098 3.902 17 C 0.267 3.733 18 C -0.541 4.541 19 H 0.049 0.951 20 C 0.011 3.989 21 N -0.927 5.927 22 Si 0.962 3.038 23 H -0.273 1.273 24 H -0.279 1.279 25 H -0.268 1.268 26 C -0.217 4.217 27 C -0.057 4.057 28 C -0.099 4.099 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.342 0.658 39 H 0.069 0.931 40 H 0.046 0.954 41 H 0.142 0.858 42 H 0.133 0.867 43 H 0.052 0.948 44 H 0.079 0.921 45 H 0.056 0.944 46 H 0.009 0.991 47 H 0.009 0.991 48 H 0.267 0.733 49 H 0.093 0.907 50 H 0.118 0.882 51 H 0.057 0.943 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.494 6.861 26.299 27.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.108 4.108 3 H 0.090 0.910 4 C -0.149 4.149 5 C -0.154 4.154 6 C -0.182 4.182 7 C -0.020 4.020 8 H 0.092 0.908 9 N -0.320 5.320 10 C -0.005 4.005 11 C -0.161 4.161 12 C -0.080 4.080 13 C -0.239 4.239 14 C 0.107 3.893 15 N -0.340 5.340 16 C -0.045 4.045 17 C 0.145 3.855 18 C -0.580 4.580 19 H 0.068 0.932 20 C -0.188 4.188 21 N -0.566 5.566 22 Si 0.787 3.213 23 H -0.198 1.198 24 H -0.204 1.204 25 H -0.193 1.193 26 C -0.240 4.240 27 C -0.076 4.076 28 C -0.137 4.137 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.161 0.839 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.160 0.840 42 H 0.151 0.849 43 H 0.070 0.930 44 H 0.097 0.903 45 H 0.075 0.925 46 H 0.027 0.973 47 H 0.027 0.973 48 H 0.076 0.924 49 H 0.111 0.889 50 H 0.136 0.864 51 H 0.076 0.924 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.266 7.272 25.476 26.524 hybrid contribution -0.478 -0.980 -0.623 1.256 sum 0.787 6.293 24.853 25.649 Atomic orbital electron populations 1.21929 0.95212 1.01962 1.01608 1.21095 0.96048 0.99167 0.94528 0.90997 1.21556 1.00496 0.95454 0.97442 1.21502 1.01026 0.95654 0.97170 1.22214 1.01025 0.99248 0.95749 1.21624 0.99426 0.93787 0.87187 0.90763 1.60610 1.05945 1.28845 1.36638 1.20589 0.95978 0.91103 0.92875 1.19534 1.02719 0.99698 0.94129 1.20907 0.94858 0.94273 0.97933 1.20783 1.07567 1.05213 0.90338 1.18224 0.92145 0.91402 0.87500 1.46961 1.47388 1.35535 1.04162 1.21598 0.91646 0.88825 1.02398 1.18762 0.93635 0.94213 0.78902 1.21741 1.12328 1.21755 1.02201 0.93248 1.25806 1.00536 0.96164 0.96315 1.70034 1.42122 1.33867 1.10622 0.85545 0.79278 0.79079 0.77404 1.19847 1.20373 1.19287 1.20775 1.03763 1.00601 0.98856 1.20776 0.97738 0.97522 0.91567 1.21481 1.00293 0.94511 0.97413 0.92149 0.93268 0.92348 0.91296 0.92098 0.91626 0.91579 0.92284 0.91887 0.83943 0.91248 0.93637 0.83997 0.84883 0.92977 0.90257 0.92545 0.97311 0.97268 0.92378 0.88895 0.86379 0.92431 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.50 71.98 0.61 -1.32 16 2 C -0.09 -1.18 3.20 -10.79 -0.03 -1.22 16 3 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 4 C -0.11 -1.28 5.45 30.60 0.17 -1.12 16 5 C -0.12 -1.36 5.65 30.60 0.17 -1.19 16 6 C -0.14 -1.99 5.17 30.60 0.16 -1.84 16 7 C 0.09 1.51 2.19 44.92 0.10 1.61 16 8 H 0.07 1.33 6.09 -2.39 -0.01 1.31 16 9 N -0.69 -14.46 6.24 -495.58 -3.09 -17.55 16 10 C 0.12 2.76 5.61 85.56 0.48 3.24 16 11 C -0.16 -4.60 5.39 -19.84 -0.11 -4.71 16 12 C -0.06 -1.69 9.69 22.25 0.22 -1.48 16 13 C -0.22 -7.15 9.21 22.40 0.21 -6.94 16 14 C 0.21 8.82 6.55 38.22 0.25 9.07 16 15 N -0.63 -28.22 2.99 -726.57 -2.17 -30.40 16 16 C 0.10 3.45 10.19 127.77 1.30 4.76 16 17 C 0.27 14.30 4.92 85.63 0.42 14.72 16 18 C -0.54 -30.89 9.39 25.60 0.24 -30.65 16 19 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 20 C 0.01 0.63 5.46 84.66 0.46 1.09 16 21 N -0.93 -55.18 13.29 21.45 0.28 -54.89 16 22 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 23 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 25 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 26 C -0.22 -9.38 9.21 22.40 0.21 -9.17 16 27 C -0.06 -2.02 9.69 22.25 0.22 -1.80 16 28 C -0.10 -1.64 5.06 30.59 0.15 -1.49 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.77 4.81 -2.39 -0.01 0.76 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.07 0.78 6.43 -2.39 -0.02 0.76 16 35 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.06 0.84 7.46 -2.39 -0.02 0.82 16 37 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 38 H 0.34 6.93 8.46 -89.69 -0.76 6.17 16 39 H 0.07 1.60 8.00 -2.39 -0.02 1.58 16 40 H 0.05 0.89 7.38 -2.38 -0.02 0.87 16 41 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 42 H 0.13 3.78 6.14 -2.91 -0.02 3.76 16 43 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.08 2.35 6.20 -2.39 -0.01 2.33 16 45 H 0.06 2.06 8.07 -2.39 -0.02 2.04 16 46 H 0.01 0.50 8.07 -2.39 -0.02 0.48 16 47 H 0.01 0.54 6.18 -2.39 -0.01 0.53 16 48 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 49 H 0.09 4.64 6.14 -2.91 -0.02 4.62 16 50 H 0.12 3.91 8.06 -2.91 -0.02 3.88 16 51 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 52 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -63.23 396.96 2.40 -60.83 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 0.13 Total: 23.86 kcal Atomic # 6 Polarization: -33.66 SS G_CDS: 5.22 Total: -28.44 kcal Atomic # 7 Polarization: -97.86 SS G_CDS: -4.98 Total: -102.84 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -63.23 2.40 -60.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073650785.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.044 kcal (2) G-P(sol) polarization free energy of solvation -63.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds