Wall clock time and date at job start Tue Mar 31 2020 11:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47289 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00046 * 2 1 3 5 5 C 1.52999 * 109.46626 * 299.99539 * 4 2 1 6 6 C 1.52997 * 109.47592 * 300.00035 * 5 4 2 7 7 C 1.52996 * 109.47165 * 60.00300 * 6 5 4 8 8 H 1.08996 * 109.47134 * 59.99508 * 7 6 5 9 9 N 1.46897 * 109.47593 * 180.02562 * 7 6 5 10 10 C 1.46908 * 110.99448 * 275.00010 * 9 7 6 11 11 C 1.50697 * 109.46640 * 179.97438 * 10 9 7 12 12 C 1.38288 * 119.92875 * 269.72509 * 11 10 9 13 13 C 1.38109 * 120.07664 * 179.73058 * 12 11 10 14 14 C 1.38902 * 119.92193 * 0.54342 * 13 12 11 15 15 N 1.39675 * 120.07343 * 179.75188 * 14 13 12 16 16 C 1.46502 * 120.00315 * 179.97438 * 15 14 13 17 17 C 1.46499 * 120.00083 * 359.97438 * 15 14 13 18 18 C 1.50699 * 109.46997 * 90.00159 * 17 15 14 19 19 H 1.08000 * 119.99989 * 359.97438 * 18 17 15 20 20 C 1.37879 * 120.00132 * 180.02562 * 18 17 15 21 21 N 1.31507 * 119.99996 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00071 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46695 * 60.00104 * 22 20 18 24 24 H 1.48495 * 109.46895 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47197 * 300.00179 * 22 20 18 26 26 C 1.38913 * 119.85539 * 359.72902 * 14 13 12 27 27 C 1.38109 * 119.92229 * 0.02562 * 26 14 13 28 28 C 1.52997 * 109.47232 * 119.99925 * 2 1 3 29 29 H 1.09001 * 109.46832 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47153 * 300.00084 * 1 2 3 31 31 H 1.08996 * 109.46952 * 60.00255 * 1 2 3 32 32 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.47160 * 60.00369 * 5 4 2 35 35 H 1.09002 * 109.46719 * 180.02562 * 5 4 2 36 36 H 1.09000 * 109.47140 * 300.00346 * 6 5 4 37 37 H 1.09001 * 109.47375 * 180.02562 * 6 5 4 38 38 H 1.00892 * 111.00466 * 151.04056 * 9 7 6 39 39 H 1.08996 * 109.47120 * 299.99056 * 10 9 7 40 40 H 1.09002 * 109.47207 * 59.99753 * 10 9 7 41 41 H 1.08001 * 119.95847 * 359.97438 * 12 11 10 42 42 H 1.08001 * 120.03443 * 180.27133 * 13 12 11 43 43 H 1.08999 * 109.47355 * 89.99744 * 16 15 14 44 44 H 1.08998 * 109.47365 * 209.99829 * 16 15 14 45 45 H 1.08999 * 109.46701 * 330.00276 * 16 15 14 46 46 H 1.08999 * 109.47785 * 210.00014 * 17 15 14 47 47 H 1.09003 * 109.47075 * 330.00581 * 17 15 14 48 48 H 0.97001 * 120.00256 * 179.97438 * 21 20 18 49 49 H 1.08003 * 120.03953 * 180.02562 * 26 14 13 50 50 H 1.07996 * 119.95823 * 180.02562 * 27 26 14 51 51 H 1.09000 * 109.47140 * 180.02562 * 28 2 1 52 52 H 1.09001 * 109.47230 * 299.99295 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5300 -2.1638 -1.2491 6 6 2.0401 -2.8850 0.0001 7 6 1.5301 -2.1638 1.2493 8 1 0.4401 -2.1637 1.2493 9 7 2.0202 -2.8558 2.4488 10 6 1.1369 -3.9727 2.8099 11 6 1.6709 -4.6573 4.0416 12 6 2.5589 -5.7099 3.9157 13 6 3.0546 -6.3359 5.0426 14 6 2.6513 -5.9145 6.3032 15 7 3.1465 -6.5487 7.4449 16 6 2.7206 -6.1026 8.7737 17 6 4.0919 -7.6601 7.3136 18 6 5.5002 -7.1236 7.3080 19 1 5.6736 -6.0610 7.3933 20 6 6.5673 -7.9892 7.1930 21 7 6.3561 -9.2829 7.0875 22 14 8.3129 -7.3241 7.1854 23 1 8.5726 -6.6013 8.4563 24 1 9.2712 -8.4506 7.0524 25 1 8.4824 -6.3916 6.0420 26 6 1.7548 -4.8605 6.4261 27 6 1.2670 -4.2356 5.2951 28 6 2.0400 -0.7212 1.2492 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7209 -1.2495 34 1 0.4400 -2.1638 -1.2491 35 1 1.8937 -2.6777 -2.1389 36 1 3.1301 -2.8849 0.0001 37 1 1.6771 -3.9128 -0.0001 38 1 2.1245 -2.2134 3.2197 39 1 0.1349 -3.5934 3.0103 40 1 1.0976 -4.6858 1.9864 41 1 2.8683 -6.0402 2.9351 42 1 3.7515 -7.1550 4.9436 43 1 1.8309 -6.6555 9.0748 44 1 3.5208 -6.2833 9.4915 45 1 2.4932 -5.0370 8.7436 46 1 3.9672 -8.3444 8.1527 47 1 3.9016 -8.1906 6.3806 48 1 7.1067 -9.8918 7.0062 49 1 1.4395 -4.5301 7.4048 50 1 0.5702 -3.4159 5.3900 51 1 3.1300 -0.7208 1.2494 52 1 1.6768 -0.2073 2.1392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073650787.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:41 Heat of formation + Delta-G solvation = 7.474016 kcal Electronic energy + Delta-G solvation = -26205.821542 eV Core-core repulsion = 22782.777677 eV Total energy + Delta-G solvation = -3423.043866 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.63522 -38.89237 -36.28366 -34.72453 -32.69592 -31.87016 -30.72136 -30.40910 -28.30063 -27.77022 -27.04204 -25.47839 -23.95154 -22.61260 -22.14379 -21.50399 -21.33338 -19.57571 -18.77050 -16.71453 -16.45527 -16.20268 -15.45688 -15.13111 -14.98934 -14.73926 -14.34604 -14.30815 -13.98042 -13.71302 -13.69301 -13.31741 -13.00913 -12.88961 -12.84615 -12.55364 -12.18577 -12.09322 -11.83174 -11.73037 -11.65982 -11.38164 -11.30112 -11.22763 -11.20922 -10.97318 -10.78901 -10.65880 -10.58599 -10.29250 -10.24588 -10.08403 -9.88343 -9.73016 -8.82606 -8.48797 -8.30706 -8.22803 -6.44763 -6.00052 -4.15795 2.14013 2.24594 3.29793 3.33933 3.37731 4.10469 4.18346 4.42950 4.45672 4.49452 4.60814 4.82262 4.97242 5.05796 5.14666 5.15345 5.23103 5.25187 5.33212 5.35609 5.37740 5.45173 5.58677 5.59644 5.62301 5.64428 5.72597 5.81336 5.83593 5.85023 5.93143 6.03059 6.04155 6.05280 6.10036 6.10463 6.14973 6.29236 6.34039 6.42540 6.46580 6.66487 6.95505 7.03306 7.16270 7.21054 7.29270 7.39921 7.50706 7.63361 7.82522 8.17077 8.28565 8.50686 8.92937 9.50977 10.97225 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015952 B = 0.002554 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.838147 B =10959.921099 C =11918.396700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.089 4.089 3 H 0.068 0.932 4 C -0.115 4.115 5 C -0.121 4.121 6 C -0.107 4.107 7 C 0.087 3.913 8 H 0.043 0.957 9 N -0.682 5.682 10 C 0.117 3.883 11 C -0.172 4.172 12 C -0.051 4.051 13 C -0.188 4.188 14 C 0.241 3.759 15 N -0.616 5.616 16 C 0.099 3.901 17 C 0.249 3.751 18 C -0.531 4.531 19 H 0.058 0.942 20 C 0.062 3.938 21 N -0.896 5.896 22 Si 0.896 3.104 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.275 1.275 26 C -0.222 4.222 27 C -0.069 4.069 28 C -0.116 4.116 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.341 0.659 39 H 0.025 0.975 40 H 0.070 0.930 41 H 0.111 0.889 42 H 0.131 0.869 43 H 0.035 0.965 44 H 0.067 0.933 45 H 0.054 0.946 46 H 0.030 0.970 47 H 0.036 0.964 48 H 0.264 0.736 49 H 0.112 0.888 50 H 0.104 0.896 51 H 0.071 0.929 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.738 15.553 -12.415 23.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.108 4.108 3 H 0.087 0.913 4 C -0.152 4.152 5 C -0.159 4.159 6 C -0.146 4.146 7 C -0.023 4.023 8 H 0.061 0.939 9 N -0.313 5.313 10 C -0.011 4.011 11 C -0.175 4.175 12 C -0.070 4.070 13 C -0.210 4.210 14 C 0.134 3.866 15 N -0.322 5.322 16 C -0.046 4.046 17 C 0.130 3.870 18 C -0.570 4.570 19 H 0.077 0.923 20 C -0.140 4.140 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.200 1.200 26 C -0.245 4.245 27 C -0.088 4.088 28 C -0.154 4.154 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.159 0.841 39 H 0.044 0.956 40 H 0.089 0.911 41 H 0.129 0.871 42 H 0.149 0.851 43 H 0.053 0.947 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.048 0.952 47 H 0.054 0.946 48 H 0.074 0.926 49 H 0.130 0.870 50 H 0.122 0.878 51 H 0.090 0.910 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.112 14.839 -12.563 22.907 hybrid contribution 0.383 0.761 0.513 0.994 sum -11.729 15.600 -12.050 22.937 Atomic orbital electron populations 1.21958 0.95501 1.02133 1.01318 1.21062 0.95777 0.99008 0.94941 0.91332 1.21568 1.00724 0.95753 0.97158 1.21583 1.00741 0.95550 0.98046 1.21526 1.01602 0.98655 0.92777 1.21548 0.96900 0.92548 0.91278 0.93947 1.60550 1.51100 1.12721 1.06966 1.20676 0.92386 0.92664 0.95367 1.19187 1.04254 1.00770 0.93263 1.20638 0.94564 0.94292 0.97518 1.20898 1.05022 1.04413 0.90707 1.17954 0.90627 0.90397 0.87609 1.47099 1.46909 1.36183 1.01984 1.21465 0.99094 0.98540 0.85454 1.19277 0.86355 0.83515 0.97901 1.21540 0.90932 0.93812 1.50731 0.92326 1.24959 0.99348 0.94749 0.94994 1.69917 1.31805 1.01901 1.49827 0.86580 0.83833 0.78448 0.78757 1.20273 1.21198 1.20022 1.20512 1.04854 1.00890 0.98262 1.20495 0.98404 0.98032 0.91881 1.21737 1.01613 0.94683 0.97380 0.92010 0.92975 0.92931 0.92292 0.91877 0.92001 0.92083 0.91264 0.92162 0.84060 0.95639 0.91146 0.87084 0.85102 0.94663 0.91472 0.92730 0.95239 0.94623 0.92597 0.87002 0.87830 0.91013 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 8.50 37.16 0.32 -0.76 16 2 C -0.09 -0.67 3.19 -90.62 -0.29 -0.96 16 3 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.11 -0.86 5.45 -26.73 -0.15 -1.00 16 5 C -0.12 -0.97 5.65 -26.73 -0.15 -1.12 16 6 C -0.11 -1.06 5.42 -26.73 -0.15 -1.20 16 7 C 0.09 0.86 2.22 -67.71 -0.15 0.71 16 8 H 0.04 0.42 6.09 -51.93 -0.32 0.11 16 9 N -0.68 -8.23 6.30 -107.99 -0.68 -8.91 16 10 C 0.12 1.49 5.61 -4.97 -0.03 1.47 16 11 C -0.17 -2.69 5.39 -104.59 -0.56 -3.25 16 12 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 13 C -0.19 -3.87 9.21 -39.38 -0.36 -4.24 16 14 C 0.24 4.95 6.55 -83.79 -0.55 4.40 16 15 N -0.62 -13.35 2.99 -181.00 -0.54 -13.89 16 16 C 0.10 1.75 10.19 59.85 0.61 2.36 16 17 C 0.25 6.31 4.91 -5.19 -0.03 6.28 16 18 C -0.53 -14.63 9.39 -34.44 -0.32 -14.95 16 19 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.90 -25.83 13.29 55.43 0.74 -25.09 16 22 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 26 C -0.22 -3.90 9.21 -39.38 -0.36 -4.26 16 27 C -0.07 -1.07 9.69 -39.61 -0.38 -1.46 16 28 C -0.12 -1.03 4.72 -26.73 -0.13 -1.15 16 29 H 0.06 0.46 4.81 -51.93 -0.25 0.21 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.48 6.43 -51.93 -0.33 0.14 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.63 7.46 -51.93 -0.39 0.24 16 38 H 0.34 4.08 8.34 -39.30 -0.33 3.75 16 39 H 0.03 0.30 8.00 -51.93 -0.42 -0.11 16 40 H 0.07 0.89 7.38 -51.93 -0.38 0.51 16 41 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.13 2.98 6.14 -52.49 -0.32 2.66 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 45 H 0.05 0.86 6.20 -51.93 -0.32 0.54 16 46 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 47 H 0.04 0.95 6.20 -51.93 -0.32 0.63 16 48 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 49 H 0.11 1.77 6.14 -52.48 -0.32 1.45 16 50 H 0.10 1.35 8.06 -52.49 -0.42 0.93 16 51 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 52 H 0.06 0.51 8.12 -51.93 -0.42 0.08 16 LS Contribution 396.84 15.07 5.98 5.98 Total: -1.00 -28.53 396.84 -11.84 -40.37 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -9.16 Total: 3.86 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: -3.16 Total: -18.81 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -0.49 Total: -47.89 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -28.53 -11.84 -40.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073650787.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.844 kcal (2) G-P(sol) polarization free energy of solvation -28.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds