Wall clock time and date at job start Tue Mar 31 2020 11:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47289 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00046 * 2 1 3 5 5 C 1.52999 * 109.46626 * 299.99539 * 4 2 1 6 6 C 1.52997 * 109.47592 * 300.00035 * 5 4 2 7 7 C 1.52996 * 109.47165 * 60.00300 * 6 5 4 8 8 H 1.08996 * 109.47134 * 59.99508 * 7 6 5 9 9 N 1.46897 * 109.47593 * 180.02562 * 7 6 5 10 10 C 1.46908 * 110.99448 * 275.00010 * 9 7 6 11 11 C 1.50697 * 109.46640 * 179.97438 * 10 9 7 12 12 C 1.38288 * 119.92875 * 269.72509 * 11 10 9 13 13 C 1.38109 * 120.07664 * 179.73058 * 12 11 10 14 14 C 1.38902 * 119.92193 * 0.54342 * 13 12 11 15 15 N 1.39675 * 120.07343 * 179.75188 * 14 13 12 16 16 C 1.46502 * 120.00315 * 179.97438 * 15 14 13 17 17 C 1.46499 * 120.00083 * 359.97438 * 15 14 13 18 18 C 1.50699 * 109.46997 * 90.00159 * 17 15 14 19 19 H 1.08000 * 119.99989 * 359.97438 * 18 17 15 20 20 C 1.37879 * 120.00132 * 180.02562 * 18 17 15 21 21 N 1.31507 * 119.99996 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00071 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46695 * 60.00104 * 22 20 18 24 24 H 1.48495 * 109.46895 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47197 * 300.00179 * 22 20 18 26 26 C 1.38913 * 119.85539 * 359.72902 * 14 13 12 27 27 C 1.38109 * 119.92229 * 0.02562 * 26 14 13 28 28 C 1.52997 * 109.47232 * 119.99925 * 2 1 3 29 29 H 1.09001 * 109.46832 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47153 * 300.00084 * 1 2 3 31 31 H 1.08996 * 109.46952 * 60.00255 * 1 2 3 32 32 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.47160 * 60.00369 * 5 4 2 35 35 H 1.09002 * 109.46719 * 180.02562 * 5 4 2 36 36 H 1.09000 * 109.47140 * 300.00346 * 6 5 4 37 37 H 1.09001 * 109.47375 * 180.02562 * 6 5 4 38 38 H 1.00892 * 111.00466 * 151.04056 * 9 7 6 39 39 H 1.08996 * 109.47120 * 299.99056 * 10 9 7 40 40 H 1.09002 * 109.47207 * 59.99753 * 10 9 7 41 41 H 1.08001 * 119.95847 * 359.97438 * 12 11 10 42 42 H 1.08001 * 120.03443 * 180.27133 * 13 12 11 43 43 H 1.08999 * 109.47355 * 89.99744 * 16 15 14 44 44 H 1.08998 * 109.47365 * 209.99829 * 16 15 14 45 45 H 1.08999 * 109.46701 * 330.00276 * 16 15 14 46 46 H 1.08999 * 109.47785 * 210.00014 * 17 15 14 47 47 H 1.09003 * 109.47075 * 330.00581 * 17 15 14 48 48 H 0.97001 * 120.00256 * 179.97438 * 21 20 18 49 49 H 1.08003 * 120.03953 * 180.02562 * 26 14 13 50 50 H 1.07996 * 119.95823 * 180.02562 * 27 26 14 51 51 H 1.09000 * 109.47140 * 180.02562 * 28 2 1 52 52 H 1.09001 * 109.47230 * 299.99295 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5300 -2.1638 -1.2491 6 6 2.0401 -2.8850 0.0001 7 6 1.5301 -2.1638 1.2493 8 1 0.4401 -2.1637 1.2493 9 7 2.0202 -2.8558 2.4488 10 6 1.1369 -3.9727 2.8099 11 6 1.6709 -4.6573 4.0416 12 6 2.5589 -5.7099 3.9157 13 6 3.0546 -6.3359 5.0426 14 6 2.6513 -5.9145 6.3032 15 7 3.1465 -6.5487 7.4449 16 6 2.7206 -6.1026 8.7737 17 6 4.0919 -7.6601 7.3136 18 6 5.5002 -7.1236 7.3080 19 1 5.6736 -6.0610 7.3933 20 6 6.5673 -7.9892 7.1930 21 7 6.3561 -9.2829 7.0875 22 14 8.3129 -7.3241 7.1854 23 1 8.5726 -6.6013 8.4563 24 1 9.2712 -8.4506 7.0524 25 1 8.4824 -6.3916 6.0420 26 6 1.7548 -4.8605 6.4261 27 6 1.2670 -4.2356 5.2951 28 6 2.0400 -0.7212 1.2492 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7209 -1.2495 34 1 0.4400 -2.1638 -1.2491 35 1 1.8937 -2.6777 -2.1389 36 1 3.1301 -2.8849 0.0001 37 1 1.6771 -3.9128 -0.0001 38 1 2.1245 -2.2134 3.2197 39 1 0.1349 -3.5934 3.0103 40 1 1.0976 -4.6858 1.9864 41 1 2.8683 -6.0402 2.9351 42 1 3.7515 -7.1550 4.9436 43 1 1.8309 -6.6555 9.0748 44 1 3.5208 -6.2833 9.4915 45 1 2.4932 -5.0370 8.7436 46 1 3.9672 -8.3444 8.1527 47 1 3.9016 -8.1906 6.3806 48 1 7.1067 -9.8918 7.0062 49 1 1.4395 -4.5301 7.4048 50 1 0.5702 -3.4159 5.3900 51 1 3.1300 -0.7208 1.2494 52 1 1.6768 -0.2073 2.1392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073650787.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:39 Heat of formation + Delta-G solvation = -6.319101 kcal Electronic energy + Delta-G solvation = -26206.419657 eV Core-core repulsion = 22782.777677 eV Total energy + Delta-G solvation = -3423.641980 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.59024 -40.09468 -37.65659 -35.87969 -34.70673 -32.56278 -31.88218 -31.84760 -29.72124 -29.27002 -27.63608 -26.92638 -25.52769 -23.66615 -23.28071 -22.94779 -22.15784 -21.02230 -19.45742 -18.63697 -18.11818 -17.11008 -16.91123 -16.37913 -16.00085 -15.83928 -15.60702 -15.39522 -15.33133 -14.91249 -14.69842 -14.50175 -14.29091 -14.12107 -14.00634 -13.63990 -13.33203 -13.23330 -13.14710 -13.12135 -12.98653 -12.67586 -12.53221 -12.43352 -12.36672 -12.24880 -11.99502 -11.89221 -11.84929 -11.77006 -11.41125 -11.29993 -11.00219 -10.77771 -10.64288 -10.38976 -9.66289 -9.21443 -8.36228 -7.79968 -6.37656 0.71615 0.84489 1.36527 1.38936 1.46989 2.34096 2.63711 3.01649 3.05980 3.46743 3.78566 3.84476 4.06030 4.11756 4.15833 4.23345 4.32214 4.35798 4.44641 4.49519 4.50906 4.52310 4.58223 4.66001 4.68296 4.72807 4.76727 4.84271 4.87561 4.90643 4.99823 5.01688 5.02710 5.12682 5.15180 5.18866 5.20430 5.22696 5.32940 5.34732 5.39567 5.45040 5.47382 5.59346 5.65095 5.68008 5.70026 5.94724 6.07001 6.19205 6.28923 6.50169 6.58542 6.82457 6.94170 7.34083 8.82944 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015952 B = 0.002554 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.838147 B =10959.921099 C =11918.396700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.087 4.087 3 H 0.075 0.925 4 C -0.114 4.114 5 C -0.117 4.117 6 C -0.107 4.107 7 C 0.091 3.909 8 H 0.050 0.950 9 N -0.695 5.695 10 C 0.123 3.877 11 C -0.158 4.158 12 C -0.057 4.057 13 C -0.217 4.217 14 C 0.212 3.788 15 N -0.633 5.633 16 C 0.098 3.902 17 C 0.267 3.733 18 C -0.542 4.542 19 H 0.048 0.952 20 C 0.012 3.988 21 N -0.927 5.927 22 Si 0.961 3.039 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.274 1.274 26 C -0.216 4.216 27 C -0.061 4.061 28 C -0.113 4.113 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.343 0.657 39 H 0.046 0.954 40 H 0.070 0.930 41 H 0.117 0.883 42 H 0.093 0.907 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.079 0.921 46 H 0.009 0.991 47 H 0.010 0.990 48 H 0.267 0.733 49 H 0.134 0.866 50 H 0.143 0.857 51 H 0.059 0.941 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.156 18.510 -13.130 26.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.106 4.106 3 H 0.093 0.907 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.146 4.146 7 C -0.018 4.018 8 H 0.068 0.932 9 N -0.326 5.326 10 C -0.005 4.005 11 C -0.161 4.161 12 C -0.076 4.076 13 C -0.240 4.240 14 C 0.107 3.893 15 N -0.340 5.340 16 C -0.045 4.045 17 C 0.145 3.855 18 C -0.580 4.580 19 H 0.067 0.933 20 C -0.187 4.187 21 N -0.566 5.566 22 Si 0.786 3.214 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.199 1.199 26 C -0.239 4.239 27 C -0.080 4.080 28 C -0.151 4.151 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.161 0.839 39 H 0.064 0.936 40 H 0.088 0.912 41 H 0.135 0.865 42 H 0.111 0.889 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.097 0.903 46 H 0.027 0.973 47 H 0.028 0.972 48 H 0.076 0.924 49 H 0.152 0.848 50 H 0.161 0.839 51 H 0.078 0.922 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.558 17.825 -13.287 26.040 hybrid contribution 0.738 -0.108 0.637 0.981 sum -12.820 17.717 -12.650 25.264 Atomic orbital electron populations 1.21934 0.94828 1.02022 1.01893 1.21059 0.96269 0.99117 0.94137 0.90665 1.21568 1.00364 0.95446 0.97757 1.21553 1.01101 0.95734 0.97122 1.21517 1.00536 0.98578 0.93939 1.21553 0.97204 0.92906 0.90139 0.93208 1.60498 1.51443 1.12973 1.07735 1.20614 0.93178 0.92844 0.93853 1.19529 1.02325 0.99289 0.94932 1.20769 0.95057 0.94919 0.96852 1.20772 1.06041 1.04731 0.92437 1.18223 0.92222 0.91899 0.86930 1.46965 1.47227 1.36023 1.03828 1.21602 0.99271 1.00196 0.83403 1.18759 0.86690 0.84466 0.95573 1.21741 0.92356 0.93296 1.50636 0.93341 1.25786 1.03435 0.94974 0.94517 1.70026 1.33045 1.03020 1.50545 0.85565 0.78958 0.77985 0.78931 1.19268 1.20309 1.19938 1.20786 1.03480 0.99463 1.00133 1.20913 0.97989 0.98193 0.90886 1.21705 1.00837 0.94135 0.98411 0.92398 0.92742 0.92091 0.91086 0.92536 0.91277 0.91778 0.92951 0.93011 0.83854 0.93602 0.91158 0.86465 0.88897 0.92911 0.92563 0.90277 0.97252 0.97242 0.92371 0.84840 0.83936 0.92248 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.50 71.98 0.61 -1.08 16 2 C -0.09 -1.10 3.19 -10.79 -0.03 -1.14 16 3 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 4 C -0.11 -1.48 5.45 30.60 0.17 -1.31 16 5 C -0.12 -1.67 5.65 30.59 0.17 -1.50 16 6 C -0.11 -1.99 5.42 30.59 0.17 -1.83 16 7 C 0.09 1.61 2.22 44.92 0.10 1.71 16 8 H 0.05 0.84 6.09 -2.39 -0.01 0.83 16 9 N -0.69 -15.28 6.30 -495.58 -3.12 -18.40 16 10 C 0.12 2.82 5.61 85.55 0.48 3.30 16 11 C -0.16 -4.63 5.39 -19.84 -0.11 -4.74 16 12 C -0.06 -2.03 9.69 22.25 0.22 -1.81 16 13 C -0.22 -9.39 9.21 22.40 0.21 -9.19 16 14 C 0.21 8.82 6.55 38.21 0.25 9.07 16 15 N -0.63 -28.23 2.99 -726.57 -2.17 -30.40 16 16 C 0.10 3.45 10.19 127.77 1.30 4.75 16 17 C 0.27 14.31 4.91 85.63 0.42 14.73 16 18 C -0.54 -31.03 9.39 25.60 0.24 -30.79 16 19 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 20 C 0.01 0.69 5.46 84.66 0.46 1.15 16 21 N -0.93 -55.25 13.29 21.45 0.28 -54.96 16 22 Si 0.96 44.86 29.54 68.60 2.03 46.88 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 26 C -0.22 -7.14 9.21 22.40 0.21 -6.93 16 27 C -0.06 -1.70 9.69 22.25 0.22 -1.48 16 28 C -0.11 -1.76 4.72 30.59 0.14 -1.62 16 29 H 0.06 0.70 4.81 -2.39 -0.01 0.69 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 0.90 6.43 -2.39 -0.02 0.89 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.05 1.03 7.46 -2.39 -0.02 1.01 16 38 H 0.34 7.29 8.34 -89.70 -0.75 6.55 16 39 H 0.05 0.90 8.00 -2.39 -0.02 0.88 16 40 H 0.07 1.63 7.38 -2.39 -0.02 1.62 16 41 H 0.12 3.91 8.06 -2.91 -0.02 3.89 16 42 H 0.09 4.65 6.14 -2.91 -0.02 4.63 16 43 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.06 2.06 8.07 -2.39 -0.02 2.04 16 45 H 0.08 2.34 6.20 -2.39 -0.01 2.33 16 46 H 0.01 0.53 8.07 -2.39 -0.02 0.51 16 47 H 0.01 0.56 6.20 -2.39 -0.01 0.54 16 48 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 49 H 0.13 3.79 6.14 -2.91 -0.02 3.77 16 50 H 0.14 2.95 8.06 -2.91 -0.02 2.92 16 51 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 52 H 0.06 0.94 8.12 -2.39 -0.02 0.92 16 Total: -1.00 -63.78 396.84 2.37 -61.41 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 0.14 Total: 24.15 kcal Atomic # 6 Polarization: -33.90 SS G_CDS: 5.22 Total: -28.68 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -5.01 Total: -103.76 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -63.78 2.37 -61.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073650787.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.086 kcal (2) G-P(sol) polarization free energy of solvation -63.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds