Wall clock time and date at job start Tue Mar 31 2020 11:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46947 * 2 1 4 4 N 1.46900 * 109.46828 * 185.28560 * 3 2 1 5 5 C 1.46895 * 110.99726 * 160.24472 * 4 3 2 6 6 C 1.50702 * 109.47333 * 288.27595 * 5 4 3 7 7 H 1.08006 * 119.99527 * 354.96400 * 6 5 4 8 8 C 1.37876 * 120.00269 * 174.95208 * 6 5 4 9 9 N 1.31517 * 119.99709 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99855 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.46913 * 89.99728 * 10 8 6 12 12 H 1.48496 * 109.47036 * 209.99627 * 10 8 6 13 13 H 1.48493 * 109.47140 * 329.99695 * 10 8 6 14 14 C 1.46896 * 111.00228 * 284.19812 * 4 3 2 15 15 H 1.09005 * 109.50391 * 55.07646 * 14 4 3 16 16 C 1.53120 * 109.50398 * 295.00125 * 14 4 3 17 17 C 1.53121 * 109.21544 * 182.37379 * 16 14 4 18 18 C 1.53167 * 109.20657 * 57.62104 * 17 16 14 19 19 N 1.46847 * 109.55926 * 300.86193 * 18 17 16 20 20 C 1.46907 * 110.99768 * 185.84186 * 19 18 17 21 21 C 1.50696 * 109.47083 * 45.78987 * 20 19 18 22 22 C 1.38233 * 120.00074 * 269.72106 * 21 20 19 23 23 C 1.38230 * 119.99993 * 179.81251 * 22 21 20 24 24 C 1.38236 * 120.00050 * 0.42252 * 23 22 21 25 25 C 1.38229 * 119.99997 * 359.81515 * 24 23 22 26 26 C 1.38237 * 119.99892 * 90.00343 * 21 20 19 27 27 C 1.46843 * 111.19709 * 61.74645 * 19 18 17 28 28 H 1.08995 * 109.47239 * 59.99711 * 1 2 3 29 29 H 1.09004 * 109.47022 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46938 * 299.99700 * 1 2 3 31 31 H 1.09003 * 109.46500 * 240.00511 * 2 1 3 32 32 H 1.08995 * 109.47239 * 120.00289 * 2 1 3 33 33 H 1.08997 * 109.46998 * 65.29187 * 3 2 1 34 34 H 1.08996 * 109.47465 * 305.28545 * 3 2 1 35 35 H 1.08995 * 109.47492 * 48.27805 * 5 4 3 36 36 H 1.09009 * 109.47124 * 168.28522 * 5 4 3 37 37 H 0.97004 * 119.99597 * 180.02562 * 9 8 6 38 38 H 1.09000 * 109.52397 * 302.31092 * 16 14 4 39 39 H 1.08995 * 109.52233 * 62.43318 * 16 14 4 40 40 H 1.08998 * 109.50405 * 177.62854 * 17 16 14 41 41 H 1.09007 * 109.49995 * 297.74308 * 17 16 14 42 42 H 1.08999 * 109.44601 * 180.83368 * 18 17 16 43 43 H 1.09003 * 109.43590 * 60.88949 * 18 17 16 44 44 H 1.09000 * 109.46872 * 165.79651 * 20 19 18 45 45 H 1.09000 * 109.46906 * 285.78504 * 20 19 18 46 46 H 1.08004 * 119.99932 * 0.02562 * 22 21 20 47 47 H 1.08008 * 120.00416 * 180.20985 * 23 22 21 48 48 H 1.08006 * 120.00095 * 179.78827 * 24 23 22 49 49 H 1.08001 * 120.00532 * 179.97438 * 25 24 23 50 50 H 1.07999 * 119.99918 * 359.97438 * 26 21 20 51 51 H 1.09005 * 109.46121 * 178.24424 * 27 19 18 52 52 H 1.08994 * 109.46494 * 58.27012 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5034 1.4445 -0.1276 5 6 3.9893 2.7495 -0.5952 6 6 3.6257 2.9303 -2.0465 7 1 3.1602 2.1221 -2.5913 8 6 3.8870 4.1273 -2.6788 9 7 3.5692 4.2852 -3.9452 10 14 4.6924 5.5249 -1.7366 11 1 6.1684 5.4209 -1.8629 12 1 4.2382 6.8241 -2.2941 13 1 4.3110 5.4405 -0.3040 14 6 4.1429 1.0681 1.1402 15 1 3.7529 0.1062 1.4731 16 6 3.8461 2.1340 2.1987 17 6 4.5642 1.7657 3.4999 18 6 6.0665 1.6411 3.2285 19 7 6.2981 0.6089 2.2101 20 6 7.7350 0.3652 2.0249 21 6 8.4019 0.2465 3.3709 22 6 8.9137 1.3713 3.9903 23 6 9.5221 1.2630 5.2268 24 6 9.6265 0.0285 5.8400 25 6 9.1190 -1.0971 5.2185 26 6 8.5071 -0.9882 3.9837 27 6 5.6564 0.9645 0.9381 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.7561 1.9282 0.9336 34 1 1.6015 1.9830 -0.8388 35 1 3.5296 3.5415 -0.0042 36 1 5.0727 2.7950 -0.4839 37 1 3.7534 5.1273 -4.3901 38 1 4.2006 3.1035 1.8488 39 1 2.7718 2.1816 2.3764 40 1 4.3905 2.5430 4.2440 41 1 4.1814 0.8146 3.8702 42 1 6.5799 1.3645 4.1494 43 1 6.4510 2.5965 2.8714 44 1 7.8775 -0.5596 1.4658 45 1 8.1760 1.1950 1.4726 46 1 8.8352 2.3353 3.5097 47 1 9.9190 2.1424 5.7123 48 1 10.1048 -0.0566 6.8046 49 1 9.2009 -2.0616 5.6973 50 1 8.1110 -1.8676 3.4979 51 1 5.8718 0.1963 0.1954 52 1 6.0430 1.9230 0.5917 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076746455.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:26 Heat of formation + Delta-G solvation = 29.065599 kcal Electronic energy + Delta-G solvation = -27419.307028 eV Core-core repulsion = 23997.199444 eV Total energy + Delta-G solvation = -3422.107584 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.02231 -38.89739 -36.59303 -33.62343 -33.01072 -32.02254 -31.11449 -31.03649 -29.22101 -27.50919 -26.33916 -24.66910 -23.00072 -22.83393 -22.47867 -21.39621 -20.98621 -20.14796 -18.44257 -16.99063 -16.80008 -16.02089 -15.58237 -15.42118 -14.98677 -14.74043 -14.35040 -14.29347 -13.88104 -13.63523 -13.51314 -13.50410 -13.42900 -13.07646 -12.69450 -12.55375 -12.44136 -12.34502 -12.11012 -11.84953 -11.46584 -11.18993 -11.15218 -11.06918 -11.02635 -10.89911 -10.69927 -10.50371 -10.25034 -10.19689 -10.11679 -9.83800 -9.68541 -9.26810 -9.04922 -8.91597 -8.56822 -8.10826 -7.26364 -6.04932 -4.00904 1.17079 1.25638 3.25258 3.33391 3.34446 3.55075 4.10041 4.40730 4.59826 4.70790 4.82059 4.84662 4.96826 5.04214 5.11950 5.22338 5.26350 5.29273 5.34626 5.41665 5.51201 5.54575 5.58942 5.61259 5.69808 5.75681 5.82098 5.87483 5.89207 5.93472 5.96864 6.04847 6.09501 6.15509 6.24189 6.28063 6.28903 6.31386 6.35030 6.45916 6.50373 6.51809 6.62330 6.72705 6.80907 6.83937 6.96051 7.02541 7.18025 7.23895 7.65248 7.96511 8.11449 8.69097 9.06698 9.57767 11.08474 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012810 B = 0.003709 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.326028 B = 7546.451131 C = 8922.335030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C 0.060 3.940 4 N -0.521 5.521 5 C 0.157 3.843 6 C -0.504 4.504 7 H 0.081 0.919 8 C 0.068 3.932 9 N -0.901 5.901 10 Si 0.869 3.131 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.268 1.268 14 C 0.092 3.908 15 H 0.081 0.919 16 C -0.159 4.159 17 C -0.109 4.109 18 C 0.052 3.948 19 N -0.530 5.530 20 C 0.092 3.908 21 C -0.075 4.075 22 C -0.114 4.114 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.123 4.123 26 C -0.099 4.099 27 C 0.062 3.938 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.023 0.977 34 H 0.086 0.914 35 H -0.009 1.009 36 H 0.024 0.976 37 H 0.263 0.737 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.028 0.972 44 H 0.085 0.915 45 H 0.043 0.957 46 H 0.118 0.882 47 H 0.119 0.881 48 H 0.118 0.882 49 H 0.120 0.880 50 H 0.124 0.876 51 H 0.083 0.917 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.429 -8.696 18.925 22.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.068 4.068 4 N -0.243 5.243 5 C 0.031 3.969 6 C -0.542 4.542 7 H 0.099 0.901 8 C -0.133 4.133 9 N -0.540 5.540 10 Si 0.697 3.303 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.193 1.193 14 C -0.018 4.018 15 H 0.099 0.901 16 C -0.198 4.198 17 C -0.148 4.148 18 C -0.076 4.076 19 N -0.255 5.255 20 C -0.036 4.036 21 C -0.076 4.076 22 C -0.133 4.133 23 C -0.141 4.141 24 C -0.143 4.143 25 C -0.141 4.141 26 C -0.118 4.118 27 C -0.065 4.065 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.041 0.959 34 H 0.104 0.896 35 H 0.008 0.992 36 H 0.042 0.958 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.046 0.954 44 H 0.104 0.896 45 H 0.061 0.939 46 H 0.136 0.864 47 H 0.137 0.863 48 H 0.136 0.864 49 H 0.138 0.862 50 H 0.142 0.858 51 H 0.101 0.899 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 7.340 -9.336 18.538 22.016 hybrid contribution 0.635 2.361 0.730 2.552 sum 7.975 -6.975 19.267 21.988 Atomic orbital electron populations 1.21731 0.96568 1.00816 1.01557 1.21494 0.94459 0.97678 1.01809 1.22083 0.88359 0.95886 1.00484 1.62079 1.04983 1.32542 1.24716 1.20266 0.95136 0.85061 0.96443 1.21071 1.39779 0.99999 0.93380 0.90079 1.24891 0.95540 0.98130 0.94729 1.69896 1.48309 1.25655 1.10146 0.86955 0.80147 0.82506 0.80723 1.20295 1.21189 1.19322 1.21623 0.93507 0.97741 0.88918 0.90122 1.22337 1.00445 1.00704 0.96297 1.21518 0.94555 1.01354 0.97324 1.22228 0.96823 0.92755 0.95817 1.62022 1.10009 1.44370 1.09105 1.21088 0.87570 1.01858 0.93042 1.19826 0.97824 0.93428 0.96499 1.21129 0.98360 0.98209 0.95590 1.21103 0.99811 0.97629 0.95521 1.21129 1.00354 0.92885 0.99899 1.21152 0.98784 0.98536 0.95587 1.21064 0.98272 0.97290 0.95178 1.22195 0.94227 1.00471 0.89624 0.92556 0.93308 0.93444 0.91298 0.93098 0.95861 0.89558 0.99163 0.95799 0.92745 0.91948 0.91822 0.92199 0.91421 0.90493 0.95362 0.89641 0.93877 0.86364 0.86260 0.86362 0.86184 0.85774 0.89872 0.93993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 37.16 0.37 -1.65 16 2 C -0.12 -1.84 5.96 -26.73 -0.16 -2.00 16 3 C 0.06 1.12 4.71 -3.82 -0.02 1.11 16 4 N -0.52 -10.56 4.37 -227.99 -1.00 -11.55 16 5 C 0.16 3.72 2.74 -4.98 -0.01 3.70 16 6 C -0.50 -14.13 8.84 -34.44 -0.30 -14.44 16 7 H 0.08 2.50 8.05 -52.48 -0.42 2.07 16 8 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 9 N -0.90 -27.52 13.96 55.43 0.77 -26.74 16 10 Si 0.87 21.47 27.57 -169.99 -4.69 16.79 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.27 -6.41 6.40 56.52 0.36 -6.05 16 14 C 0.09 1.56 2.31 -67.63 -0.16 1.40 16 15 H 0.08 1.34 6.85 -51.93 -0.36 0.98 16 16 C -0.16 -2.53 4.66 -26.61 -0.12 -2.65 16 17 C -0.11 -1.46 6.11 -26.58 -0.16 -1.62 16 18 C 0.05 0.69 4.58 -3.77 -0.02 0.67 16 19 N -0.53 -7.35 4.80 -236.03 -1.13 -8.49 16 20 C 0.09 1.12 5.43 -4.97 -0.03 1.10 16 21 C -0.08 -0.84 4.11 -104.63 -0.43 -1.28 16 22 C -0.11 -1.22 7.82 -39.59 -0.31 -1.53 16 23 C -0.12 -1.16 10.05 -39.58 -0.40 -1.55 16 24 C -0.12 -1.10 10.05 -39.59 -0.40 -1.50 16 25 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 26 C -0.10 -1.02 9.70 -39.58 -0.38 -1.41 16 27 C 0.06 1.02 4.57 -3.83 -0.02 1.00 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.05 0.75 7.04 -51.93 -0.37 0.39 16 33 H 0.02 0.42 5.93 -51.93 -0.31 0.11 16 34 H 0.09 1.86 7.10 -51.93 -0.37 1.49 16 35 H -0.01 -0.23 5.78 -51.93 -0.30 -0.53 16 36 H 0.02 0.58 5.34 -51.92 -0.28 0.30 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.06 1.13 6.64 -51.93 -0.34 0.78 16 39 H 0.06 1.00 6.36 -51.93 -0.33 0.67 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 42 H 0.08 0.97 5.65 -51.93 -0.29 0.68 16 43 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.09 0.98 8.09 -51.93 -0.42 0.56 16 45 H 0.04 0.55 8.02 -51.93 -0.42 0.13 16 46 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 47 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 48 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 49 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 50 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 51 H 0.08 1.39 8.12 -51.93 -0.42 0.97 16 52 H 0.04 0.77 6.08 -51.93 -0.32 0.45 16 LS Contribution 389.00 15.07 5.86 5.86 Total: -1.00 -29.77 389.00 -12.41 -42.18 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -9.19 Total: 2.24 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -3.05 Total: -20.29 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: -1.36 Total: -46.78 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.69 Total: 16.79 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.77 -12.41 -42.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076746455.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.246 kcal (2) G-P(sol) polarization free energy of solvation -29.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds