Wall clock time and date at job start Tue Mar 31 2020 11:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46947 * 2 1 4 4 N 1.46900 * 109.46828 * 185.28560 * 3 2 1 5 5 C 1.46895 * 110.99726 * 160.24472 * 4 3 2 6 6 C 1.50702 * 109.47333 * 288.27595 * 5 4 3 7 7 H 1.08006 * 119.99527 * 354.96400 * 6 5 4 8 8 C 1.37876 * 120.00269 * 174.95208 * 6 5 4 9 9 N 1.31517 * 119.99709 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99855 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.46913 * 89.99728 * 10 8 6 12 12 H 1.48496 * 109.47036 * 209.99627 * 10 8 6 13 13 H 1.48493 * 109.47140 * 329.99695 * 10 8 6 14 14 C 1.46896 * 111.00228 * 284.19812 * 4 3 2 15 15 H 1.09005 * 109.50391 * 55.07646 * 14 4 3 16 16 C 1.53120 * 109.50398 * 295.00125 * 14 4 3 17 17 C 1.53121 * 109.21544 * 182.37379 * 16 14 4 18 18 C 1.53167 * 109.20657 * 57.62104 * 17 16 14 19 19 N 1.46847 * 109.55926 * 300.86193 * 18 17 16 20 20 C 1.46907 * 110.99768 * 185.84186 * 19 18 17 21 21 C 1.50696 * 109.47083 * 45.78987 * 20 19 18 22 22 C 1.38233 * 120.00074 * 269.72106 * 21 20 19 23 23 C 1.38230 * 119.99993 * 179.81251 * 22 21 20 24 24 C 1.38236 * 120.00050 * 0.42252 * 23 22 21 25 25 C 1.38229 * 119.99997 * 359.81515 * 24 23 22 26 26 C 1.38237 * 119.99892 * 90.00343 * 21 20 19 27 27 C 1.46843 * 111.19709 * 61.74645 * 19 18 17 28 28 H 1.08995 * 109.47239 * 59.99711 * 1 2 3 29 29 H 1.09004 * 109.47022 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46938 * 299.99700 * 1 2 3 31 31 H 1.09003 * 109.46500 * 240.00511 * 2 1 3 32 32 H 1.08995 * 109.47239 * 120.00289 * 2 1 3 33 33 H 1.08997 * 109.46998 * 65.29187 * 3 2 1 34 34 H 1.08996 * 109.47465 * 305.28545 * 3 2 1 35 35 H 1.08995 * 109.47492 * 48.27805 * 5 4 3 36 36 H 1.09009 * 109.47124 * 168.28522 * 5 4 3 37 37 H 0.97004 * 119.99597 * 180.02562 * 9 8 6 38 38 H 1.09000 * 109.52397 * 302.31092 * 16 14 4 39 39 H 1.08995 * 109.52233 * 62.43318 * 16 14 4 40 40 H 1.08998 * 109.50405 * 177.62854 * 17 16 14 41 41 H 1.09007 * 109.49995 * 297.74308 * 17 16 14 42 42 H 1.08999 * 109.44601 * 180.83368 * 18 17 16 43 43 H 1.09003 * 109.43590 * 60.88949 * 18 17 16 44 44 H 1.09000 * 109.46872 * 165.79651 * 20 19 18 45 45 H 1.09000 * 109.46906 * 285.78504 * 20 19 18 46 46 H 1.08004 * 119.99932 * 0.02562 * 22 21 20 47 47 H 1.08008 * 120.00416 * 180.20985 * 23 22 21 48 48 H 1.08006 * 120.00095 * 179.78827 * 24 23 22 49 49 H 1.08001 * 120.00532 * 179.97438 * 25 24 23 50 50 H 1.07999 * 119.99918 * 359.97438 * 26 21 20 51 51 H 1.09005 * 109.46121 * 178.24424 * 27 19 18 52 52 H 1.08994 * 109.46494 * 58.27012 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5034 1.4445 -0.1276 5 6 3.9893 2.7495 -0.5952 6 6 3.6257 2.9303 -2.0465 7 1 3.1602 2.1221 -2.5913 8 6 3.8870 4.1273 -2.6788 9 7 3.5692 4.2852 -3.9452 10 14 4.6924 5.5249 -1.7366 11 1 6.1684 5.4209 -1.8629 12 1 4.2382 6.8241 -2.2941 13 1 4.3110 5.4405 -0.3040 14 6 4.1429 1.0681 1.1402 15 1 3.7529 0.1062 1.4731 16 6 3.8461 2.1340 2.1987 17 6 4.5642 1.7657 3.4999 18 6 6.0665 1.6411 3.2285 19 7 6.2981 0.6089 2.2101 20 6 7.7350 0.3652 2.0249 21 6 8.4019 0.2465 3.3709 22 6 8.9137 1.3713 3.9903 23 6 9.5221 1.2630 5.2268 24 6 9.6265 0.0285 5.8400 25 6 9.1190 -1.0971 5.2185 26 6 8.5071 -0.9882 3.9837 27 6 5.6564 0.9645 0.9381 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.7561 1.9282 0.9336 34 1 1.6015 1.9830 -0.8388 35 1 3.5296 3.5415 -0.0042 36 1 5.0727 2.7950 -0.4839 37 1 3.7534 5.1273 -4.3901 38 1 4.2006 3.1035 1.8488 39 1 2.7718 2.1816 2.3764 40 1 4.3905 2.5430 4.2440 41 1 4.1814 0.8146 3.8702 42 1 6.5799 1.3645 4.1494 43 1 6.4510 2.5965 2.8714 44 1 7.8775 -0.5596 1.4658 45 1 8.1760 1.1950 1.4726 46 1 8.8352 2.3353 3.5097 47 1 9.9190 2.1424 5.7123 48 1 10.1048 -0.0566 6.8046 49 1 9.2009 -2.0616 5.6973 50 1 8.1110 -1.8676 3.4979 51 1 5.8718 0.1963 0.1954 52 1 6.0430 1.9230 0.5917 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076746455.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:25 Heat of formation + Delta-G solvation = 11.896710 kcal Electronic energy + Delta-G solvation = -27420.051527 eV Core-core repulsion = 23997.199444 eV Total energy + Delta-G solvation = -3422.852083 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.09269 -39.96871 -37.88452 -34.94484 -34.75028 -33.58496 -32.06499 -31.77788 -30.75768 -29.15930 -27.37151 -26.15405 -24.30432 -24.02190 -23.45164 -22.73631 -22.13825 -21.28214 -19.93512 -19.01321 -17.64410 -17.22805 -16.87073 -16.35883 -16.31866 -15.97597 -15.88637 -15.45340 -15.31816 -14.96263 -14.87789 -14.64150 -14.49214 -14.31956 -14.17524 -13.80889 -13.61994 -13.45095 -13.33883 -12.97541 -12.95955 -12.72865 -12.51166 -12.33700 -12.18956 -11.99260 -11.93921 -11.85146 -11.75543 -11.61186 -11.57881 -11.52243 -11.27859 -11.09233 -10.78442 -9.77497 -9.71502 -9.25465 -8.88852 -8.29846 -6.30957 0.42294 0.53393 1.27875 1.29341 1.39221 2.29868 2.65689 3.03228 3.04956 3.38899 3.75101 3.82448 3.88041 3.98153 4.01554 4.16315 4.19064 4.22568 4.30764 4.32658 4.38316 4.41369 4.53485 4.54874 4.61823 4.66167 4.69419 4.70214 4.72509 4.80411 4.82647 4.92859 4.94958 5.00477 5.03604 5.05608 5.11132 5.12275 5.19800 5.20812 5.25670 5.39149 5.44712 5.51799 5.57200 5.58751 5.65316 5.73241 5.97335 6.07592 6.08939 6.15008 6.45216 6.70038 6.76513 7.32000 8.87192 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012810 B = 0.003709 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.326028 B = 7546.451131 C = 8922.335030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 C 0.062 3.938 4 N -0.536 5.536 5 C 0.175 3.825 6 C -0.508 4.508 7 H 0.037 0.963 8 C 0.011 3.989 9 N -0.947 5.947 10 Si 0.937 3.063 11 H -0.267 1.267 12 H -0.280 1.280 13 H -0.255 1.255 14 C 0.095 3.905 15 H 0.093 0.907 16 C -0.153 4.153 17 C -0.102 4.102 18 C 0.055 3.945 19 N -0.525 5.525 20 C 0.092 3.908 21 C -0.089 4.089 22 C -0.127 4.127 23 C -0.127 4.127 24 C -0.124 4.124 25 C -0.125 4.125 26 C -0.109 4.109 27 C 0.070 3.930 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.036 0.964 34 H 0.048 0.952 35 H -0.014 1.014 36 H 0.024 0.976 37 H 0.266 0.734 38 H 0.039 0.961 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.017 0.983 44 H 0.089 0.911 45 H 0.033 0.967 46 H 0.114 0.886 47 H 0.137 0.863 48 H 0.143 0.857 49 H 0.142 0.858 50 H 0.129 0.871 51 H 0.074 0.926 52 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.303 -9.265 22.660 25.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.146 4.146 3 C -0.065 4.065 4 N -0.259 5.259 5 C 0.048 3.952 6 C -0.546 4.546 7 H 0.056 0.944 8 C -0.187 4.187 9 N -0.588 5.588 10 Si 0.762 3.238 11 H -0.192 1.192 12 H -0.205 1.205 13 H -0.179 1.179 14 C -0.014 4.014 15 H 0.111 0.889 16 C -0.193 4.193 17 C -0.140 4.140 18 C -0.073 4.073 19 N -0.250 5.250 20 C -0.035 4.035 21 C -0.089 4.089 22 C -0.146 4.146 23 C -0.145 4.145 24 C -0.142 4.142 25 C -0.143 4.143 26 C -0.128 4.128 27 C -0.058 4.058 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.003 0.997 36 H 0.042 0.958 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.108 0.892 43 H 0.036 0.964 44 H 0.108 0.892 45 H 0.051 0.949 46 H 0.132 0.868 47 H 0.155 0.845 48 H 0.161 0.839 49 H 0.160 0.840 50 H 0.147 0.853 51 H 0.093 0.907 52 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 8.214 -9.926 22.294 25.749 hybrid contribution 0.372 2.430 -0.441 2.497 sum 8.586 -7.497 21.853 24.647 Atomic orbital electron populations 1.21696 0.94614 1.02290 1.01588 1.21415 0.96103 0.95275 1.01759 1.22061 0.87353 0.97743 0.99381 1.61995 1.06105 1.30453 1.27335 1.19921 0.94946 0.86794 0.93563 1.21285 1.39000 0.98880 0.95482 0.94445 1.25757 0.96240 1.01064 0.95595 1.70047 1.50026 1.26687 1.12067 0.85860 0.79375 0.78813 0.79801 1.19238 1.20528 1.17877 1.21659 0.93558 0.98538 0.87640 0.88915 1.22260 1.00927 0.98897 0.97169 1.21499 0.93946 1.02444 0.96119 1.22240 0.97043 0.92060 0.95951 1.62041 1.11027 1.44165 1.07725 1.21098 0.86590 1.01592 0.94188 1.19737 0.98900 0.94245 0.96056 1.21201 0.99078 0.97931 0.96354 1.21366 0.99327 0.98779 0.95036 1.21478 0.99611 0.92425 1.00732 1.21453 0.97960 0.99776 0.95079 1.21216 0.98652 0.97048 0.95851 1.22020 0.94070 0.98898 0.90848 0.93854 0.91099 0.92117 0.93065 0.91292 0.94553 0.93348 0.99663 0.95774 0.92517 0.94250 0.91443 0.90386 0.90387 0.89222 0.96447 0.89227 0.94893 0.86766 0.84508 0.83914 0.84004 0.85275 0.90717 0.96401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 9.91 71.98 0.71 -3.01 16 2 C -0.11 -3.33 5.96 30.60 0.18 -3.15 16 3 C 0.06 2.38 4.71 86.30 0.41 2.78 16 4 N -0.54 -22.15 4.37 -875.22 -3.83 -25.98 16 5 C 0.17 8.47 2.74 85.56 0.23 8.70 16 6 C -0.51 -29.80 8.84 25.60 0.23 -29.57 16 7 H 0.04 2.46 8.05 -2.91 -0.02 2.44 16 8 C 0.01 0.63 5.47 84.65 0.46 1.09 16 9 N -0.95 -59.97 13.96 21.45 0.30 -59.67 16 10 Si 0.94 44.98 27.57 68.60 1.89 46.87 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 13 H -0.25 -11.57 6.40 99.48 0.64 -10.93 16 14 C 0.09 3.16 2.31 44.97 0.10 3.26 16 15 H 0.09 2.90 6.85 -2.38 -0.02 2.89 16 16 C -0.15 -4.67 4.66 30.67 0.14 -4.53 16 17 C -0.10 -2.46 6.11 30.69 0.19 -2.27 16 18 C 0.05 1.37 4.58 86.37 0.40 1.76 16 19 N -0.52 -14.06 4.80 -900.65 -4.32 -18.38 16 20 C 0.09 2.22 5.43 85.55 0.46 2.69 16 21 C -0.09 -1.88 4.11 -19.87 -0.08 -1.96 16 22 C -0.13 -2.52 7.82 22.27 0.17 -2.35 16 23 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16 24 C -0.12 -1.81 10.05 22.27 0.22 -1.58 16 25 C -0.12 -1.92 10.05 22.27 0.22 -1.69 16 26 C -0.11 -2.03 9.70 22.27 0.22 -1.82 16 27 C 0.07 2.28 4.57 86.33 0.39 2.68 16 28 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.07 1.89 7.04 -2.39 -0.02 1.88 16 33 H 0.04 1.28 5.93 -2.39 -0.01 1.26 16 34 H 0.05 2.19 7.10 -2.39 -0.02 2.17 16 35 H -0.01 -0.70 5.78 -2.39 -0.01 -0.72 16 36 H 0.02 1.18 5.34 -2.38 -0.01 1.17 16 37 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 38 H 0.04 1.38 6.64 -2.39 -0.02 1.36 16 39 H 0.07 1.99 6.36 -2.39 -0.02 1.98 16 40 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 42 H 0.09 2.06 5.65 -2.39 -0.01 2.05 16 43 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.09 2.03 8.09 -2.39 -0.02 2.01 16 45 H 0.03 0.85 8.02 -2.39 -0.02 0.83 16 46 H 0.11 2.28 8.06 -2.91 -0.02 2.26 16 47 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 48 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 49 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 50 H 0.13 2.19 8.06 -2.91 -0.02 2.16 16 51 H 0.07 2.54 8.12 -2.38 -0.02 2.52 16 52 H 0.02 0.67 6.08 -2.39 -0.01 0.66 16 Total: -1.00 -66.68 389.00 -0.27 -66.95 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.80 Total: 21.03 kcal Atomic # 6 Polarization: -35.72 SS G_CDS: 4.89 Total: -30.82 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: -7.85 Total: -104.02 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.89 Total: 46.87 kcal Total: -66.68 -0.27 -66.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076746455.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.849 kcal (2) G-P(sol) polarization free energy of solvation -66.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds