Wall clock time and date at job start Tue Mar 31 2020 11:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 108.93916 * 2 1 4 4 C 1.54192 * 108.89392 * 241.27810 * 2 1 3 5 5 N 1.44578 * 108.85138 * 160.55904 * 4 2 1 6 6 C 1.46902 * 111.00124 * 220.34777 * 5 4 2 7 7 C 1.50700 * 109.47225 * 190.00251 * 6 5 4 8 8 C 1.38236 * 119.99564 * 269.72873 * 7 6 5 9 9 C 1.38237 * 119.99852 * 179.74590 * 8 7 6 10 10 C 1.38237 * 119.99830 * 0.52253 * 9 8 7 11 11 C 1.38233 * 120.00078 * 359.75235 * 10 9 8 12 12 C 1.38229 * 120.00350 * 90.00008 * 7 6 5 13 13 C 1.48067 * 113.85550 * 94.22908 * 5 4 2 14 14 C 1.53703 * 112.47129 * 318.32025 * 13 5 4 15 15 C 1.50799 * 112.09789 * 318.55113 * 14 13 5 16 16 N 1.40025 * 108.95599 * 118.74751 * 2 1 3 17 17 C 1.46900 * 111.00036 * 308.68079 * 16 2 1 18 18 C 1.53002 * 109.46885 * 165.31134 * 17 16 2 19 19 C 1.52993 * 109.46812 * 180.02562 * 18 17 16 20 20 C 1.50706 * 109.46795 * 180.02562 * 19 18 17 21 21 H 1.07996 * 120.00253 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99685 * 180.02562 * 20 19 18 23 23 N 1.31511 * 120.00060 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99604 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47034 * 180.02562 * 24 22 20 26 26 H 1.48503 * 109.47002 * 299.99468 * 24 22 20 27 27 H 1.48488 * 109.47279 * 59.99941 * 24 22 20 28 28 H 1.09000 * 109.47346 * 309.91980 * 1 2 3 29 29 H 1.08997 * 109.46799 * 69.91987 * 1 2 3 30 30 H 1.09009 * 109.46730 * 189.91542 * 1 2 3 31 31 H 1.09004 * 109.57834 * 280.36812 * 4 2 1 32 32 H 1.09002 * 109.57738 * 40.74821 * 4 2 1 33 33 H 1.09003 * 109.47183 * 309.99940 * 6 5 4 34 34 H 1.09002 * 109.46681 * 69.99888 * 6 5 4 35 35 H 1.08002 * 120.00177 * 359.97438 * 8 7 6 36 36 H 1.07999 * 119.99778 * 180.29308 * 9 8 7 37 37 H 1.08003 * 119.99880 * 179.76845 * 10 9 8 38 38 H 1.07997 * 120.00073 * 179.97438 * 11 10 9 39 39 H 1.08005 * 119.99859 * 0.02562 * 12 7 6 40 40 H 1.09004 * 108.88151 * 79.08412 * 13 5 4 41 41 H 1.08998 * 108.88142 * 197.64730 * 13 5 4 42 42 H 1.09003 * 108.95330 * 79.22772 * 14 13 5 43 43 H 1.08997 * 108.95019 * 197.96516 * 14 13 5 44 44 H 1.09002 * 109.63535 * 332.85266 * 15 14 13 45 45 H 1.08994 * 109.63404 * 212.25599 * 15 14 13 46 46 H 1.09003 * 109.46820 * 45.31343 * 17 16 2 47 47 H 1.09003 * 109.47120 * 285.31081 * 17 16 2 48 48 H 1.09006 * 109.46928 * 60.00013 * 18 17 16 49 49 H 1.08994 * 109.47330 * 300.00184 * 18 17 16 50 50 H 1.09006 * 109.47373 * 60.00273 * 19 18 17 51 51 H 1.08997 * 109.47811 * 300.00118 * 19 18 17 52 52 H 0.97003 * 119.99726 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8838 1.0310 0.0000 4 6 2.0293 -0.7011 -1.2793 5 7 3.4013 -0.3133 -1.5194 6 6 3.6403 -0.0817 -2.9502 7 6 5.1190 0.0776 -3.1932 8 6 5.6977 1.3317 -3.1356 9 6 7.0550 1.4772 -3.3533 10 6 7.8317 0.3700 -3.6393 11 6 7.2520 -0.8833 -3.7025 12 6 5.8957 -1.0295 -3.4793 13 6 4.3966 -1.2567 -0.9611 14 6 4.0110 -1.7562 0.4404 15 6 3.4570 -0.6510 1.3040 16 7 1.9848 -0.6369 1.1611 17 6 1.3452 -0.0717 2.3566 18 6 1.5719 -1.0065 3.5465 19 6 0.9052 -0.4181 4.7914 20 6 1.1290 -1.3385 5.9636 21 1 1.6909 -2.2516 5.8336 22 6 0.6163 -1.0149 7.2020 23 7 -0.0675 0.0972 7.3604 24 14 0.8943 -2.1555 8.6550 25 1 0.2461 -1.5851 9.8631 26 1 0.3052 -3.4863 8.3594 27 1 2.3519 -2.3022 8.8973 28 1 -0.3634 0.6595 0.7881 29 1 -0.3633 0.3528 -0.9652 30 1 -0.3633 -1.0124 0.1770 31 1 1.9727 -1.7818 -1.1494 32 1 1.4114 -0.4003 -2.1255 33 1 3.2674 -0.9309 -3.5230 34 1 3.1209 0.8240 -3.2633 35 1 5.0900 2.1973 -2.9168 36 1 7.5079 2.4563 -3.3036 37 1 8.8916 0.4842 -3.8130 38 1 7.8588 -1.7482 -3.9264 39 1 5.4426 -2.0087 -3.5290 40 1 4.4840 -2.1136 -1.6292 41 1 5.3629 -0.7559 -0.9021 42 1 3.2596 -2.5397 0.3427 43 1 4.8951 -2.1720 0.9237 44 1 3.8654 0.3064 0.9804 45 1 3.7221 -0.8323 2.3456 46 1 0.2753 0.0375 2.1790 47 1 1.7791 0.9045 2.5737 48 1 2.6418 -1.1157 3.7240 49 1 1.1381 -1.9826 3.3295 50 1 -0.1647 -0.3092 4.6136 51 1 1.3385 0.5582 5.0087 52 1 -0.4285 0.3247 8.2315 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077371720.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:31 Heat of formation + Delta-G solvation = 33.392947 kcal Electronic energy + Delta-G solvation = -26764.459054 eV Core-core repulsion = 23342.539117 eV Total energy + Delta-G solvation = -3421.919937 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.21144 -39.17544 -36.62410 -33.84913 -33.33244 -32.26887 -31.16956 -31.10544 -29.06149 -27.36877 -26.24589 -25.54619 -23.44429 -22.83129 -22.57834 -21.49077 -20.19760 -19.73838 -19.48938 -17.05844 -16.46180 -16.07913 -15.90143 -15.66387 -15.49087 -14.96980 -14.60784 -14.53486 -14.19495 -13.92899 -13.66116 -13.39132 -13.27843 -12.83917 -12.73443 -12.72759 -12.28381 -12.20940 -11.78578 -11.75857 -11.44430 -11.35986 -11.25008 -11.07906 -11.03112 -10.86807 -10.75061 -10.63795 -10.48292 -10.38159 -10.17511 -9.44256 -9.24651 -9.15987 -9.04120 -8.99900 -8.28473 -8.22659 -7.77709 -5.94274 -3.95923 1.06120 1.15382 3.36967 3.40880 3.42949 3.43759 3.92002 4.25491 4.45828 4.51441 4.57223 4.74377 4.83977 4.89731 4.99729 5.03165 5.12160 5.20409 5.23676 5.33737 5.40870 5.41370 5.45484 5.50357 5.60868 5.66496 5.73700 5.78036 5.80646 5.85581 5.92688 5.98673 5.99576 6.08266 6.18368 6.20008 6.25730 6.28220 6.36631 6.37680 6.46410 6.50155 6.73322 6.84472 6.93305 6.96236 7.13375 7.24736 7.59967 7.75408 7.85867 7.92280 8.07091 8.50842 9.11278 9.67564 11.17152 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.021411 B = 0.002384 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.417125 B =11743.323842 C =12369.908686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.107 3.893 3 H 0.031 0.969 4 C 0.069 3.931 5 N -0.546 5.546 6 C 0.099 3.901 7 C -0.081 4.081 8 C -0.099 4.099 9 C -0.121 4.121 10 C -0.122 4.122 11 C -0.122 4.122 12 C -0.113 4.113 13 C 0.066 3.934 14 C -0.120 4.120 15 C 0.068 3.932 16 N -0.550 5.550 17 C 0.054 3.946 18 C -0.103 4.103 19 C 0.022 3.978 20 C -0.517 4.517 21 H 0.054 0.946 22 C 0.055 3.945 23 N -0.897 5.897 24 Si 0.891 3.109 25 H -0.288 1.288 26 H -0.277 1.277 27 H -0.277 1.277 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.040 0.960 34 H 0.082 0.918 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.030 0.970 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.043 0.957 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.026 0.974 48 H 0.045 0.955 49 H 0.053 0.947 50 H 0.014 0.986 51 H 0.012 0.988 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.348 0.429 -26.068 28.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.004 4.004 3 H 0.049 0.951 4 C -0.060 4.060 5 N -0.271 5.271 6 C -0.028 4.028 7 C -0.081 4.081 8 C -0.118 4.118 9 C -0.139 4.139 10 C -0.140 4.140 11 C -0.140 4.140 12 C -0.132 4.132 13 C -0.060 4.060 14 C -0.159 4.159 15 C -0.059 4.059 16 N -0.274 5.274 17 C -0.072 4.072 18 C -0.141 4.141 19 C -0.015 4.015 20 C -0.555 4.555 21 H 0.072 0.928 22 C -0.145 4.145 23 N -0.537 5.537 24 Si 0.719 3.281 25 H -0.214 1.214 26 H -0.203 1.203 27 H -0.203 1.203 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.100 0.900 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.048 0.952 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.062 0.938 45 H 0.097 0.903 46 H 0.095 0.905 47 H 0.044 0.956 48 H 0.064 0.936 49 H 0.071 0.929 50 H 0.033 0.967 51 H 0.031 0.969 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.161 0.491 -25.757 28.075 hybrid contribution 0.315 -0.506 0.535 0.801 sum 11.476 -0.015 -25.222 27.710 Atomic orbital electron populations 1.22088 0.94884 1.02826 1.01257 1.20343 0.94316 0.95727 0.90039 0.95083 1.22018 0.87677 0.99121 0.97182 1.60851 1.03770 1.49387 1.13084 1.21103 0.91897 1.01136 0.88628 1.19800 0.95483 0.93492 0.99331 1.21051 0.94917 0.97009 0.98812 1.21171 0.94043 0.98786 0.99934 1.21154 0.99780 0.92864 1.00252 1.21108 0.94930 0.97436 1.00500 1.21084 0.94049 0.98104 0.99957 1.22466 0.95191 0.93200 0.95186 1.21488 1.01051 0.99244 0.94069 1.21730 0.86738 0.97607 0.99833 1.59298 1.07173 1.58506 1.02469 1.22380 0.99076 0.96351 0.89391 1.21654 1.00124 0.98226 0.94090 1.19064 0.95639 0.96012 0.90835 1.21229 1.33698 1.06666 0.93938 0.92802 1.25028 0.95344 0.95281 0.98885 1.69958 1.36336 1.23624 1.23737 0.86674 0.78358 0.81080 0.81978 1.21355 1.20268 1.20299 0.91893 0.92895 0.91682 0.92932 0.91314 0.94152 0.90008 0.85913 0.86122 0.86270 0.86211 0.86448 0.95198 0.91184 0.90932 0.91369 0.93845 0.90287 0.90540 0.95572 0.93593 0.92857 0.96725 0.96917 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.29 37.16 0.31 -1.58 16 2 C 0.11 1.42 2.17 -70.64 -0.15 1.27 16 3 H 0.03 0.46 8.07 -51.93 -0.42 0.04 16 4 C 0.07 0.77 4.77 -4.45 -0.02 0.75 16 5 N -0.55 -5.97 4.10 -235.74 -0.97 -6.94 16 6 C 0.10 0.90 5.12 -4.98 -0.03 0.88 16 7 C -0.08 -0.74 4.05 -104.63 -0.42 -1.17 16 8 C -0.10 -0.90 9.70 -39.58 -0.38 -1.28 16 9 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 10 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 11 C -0.12 -0.98 10.05 -39.58 -0.40 -1.37 16 12 C -0.11 -0.98 8.03 -39.58 -0.32 -1.30 16 13 C 0.07 0.73 4.12 -2.82 -0.01 0.72 16 14 C -0.12 -1.49 5.36 -27.47 -0.15 -1.63 16 15 C 0.07 0.99 5.16 -4.37 -0.02 0.97 16 16 N -0.55 -8.42 3.90 -231.43 -0.90 -9.32 16 17 C 0.05 0.97 4.63 -3.82 -0.02 0.95 16 18 C -0.10 -2.19 5.15 -26.73 -0.14 -2.33 16 19 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 20 C -0.52 -14.95 9.11 -34.43 -0.31 -15.27 16 21 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 22 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 23 N -0.90 -27.41 13.29 55.43 0.74 -26.68 16 24 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 H 0.06 0.83 6.35 -51.93 -0.33 0.50 16 29 H 0.05 0.54 7.88 -51.93 -0.41 0.13 16 30 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 31 H 0.05 0.64 6.93 -51.93 -0.36 0.28 16 32 H 0.07 0.67 7.29 -51.93 -0.38 0.29 16 33 H 0.04 0.35 8.02 -51.93 -0.42 -0.07 16 34 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 35 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 36 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 38 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.12 0.91 7.45 -52.48 -0.39 0.52 16 40 H 0.03 0.31 6.82 -51.93 -0.35 -0.05 16 41 H 0.07 0.82 7.06 -51.93 -0.37 0.45 16 42 H 0.07 0.96 7.23 -51.93 -0.38 0.59 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.04 0.66 7.57 -51.93 -0.39 0.26 16 45 H 0.08 1.26 5.90 -51.93 -0.31 0.95 16 46 H 0.08 1.35 5.34 -51.93 -0.28 1.08 16 47 H 0.03 0.49 8.12 -51.93 -0.42 0.06 16 48 H 0.05 0.97 6.28 -51.93 -0.33 0.64 16 49 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 50 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 52 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 391.76 15.07 5.90 5.90 Total: -1.00 -30.62 391.76 -12.64 -43.26 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -9.29 Total: -2.06 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: -3.10 Total: -21.18 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: -1.13 Total: -42.94 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.62 -12.64 -43.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077371720.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.650 kcal (2) G-P(sol) polarization free energy of solvation -30.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds