Wall clock time and date at job start Tue Mar 31 2020 11:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 108.93916 * 2 1 4 4 C 1.54192 * 108.89392 * 241.27810 * 2 1 3 5 5 N 1.44578 * 108.85138 * 160.55904 * 4 2 1 6 6 C 1.46902 * 111.00124 * 220.34777 * 5 4 2 7 7 C 1.50700 * 109.47225 * 190.00251 * 6 5 4 8 8 C 1.38236 * 119.99564 * 269.72873 * 7 6 5 9 9 C 1.38237 * 119.99852 * 179.74590 * 8 7 6 10 10 C 1.38237 * 119.99830 * 0.52253 * 9 8 7 11 11 C 1.38233 * 120.00078 * 359.75235 * 10 9 8 12 12 C 1.38229 * 120.00350 * 90.00008 * 7 6 5 13 13 C 1.48067 * 113.85550 * 94.22908 * 5 4 2 14 14 C 1.53703 * 112.47129 * 318.32025 * 13 5 4 15 15 C 1.50799 * 112.09789 * 318.55113 * 14 13 5 16 16 N 1.40025 * 108.95599 * 118.74751 * 2 1 3 17 17 C 1.46900 * 111.00036 * 308.68079 * 16 2 1 18 18 C 1.53002 * 109.46885 * 165.31134 * 17 16 2 19 19 C 1.52993 * 109.46812 * 180.02562 * 18 17 16 20 20 C 1.50706 * 109.46795 * 180.02562 * 19 18 17 21 21 H 1.07996 * 120.00253 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99685 * 180.02562 * 20 19 18 23 23 N 1.31511 * 120.00060 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99604 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47034 * 180.02562 * 24 22 20 26 26 H 1.48503 * 109.47002 * 299.99468 * 24 22 20 27 27 H 1.48488 * 109.47279 * 59.99941 * 24 22 20 28 28 H 1.09000 * 109.47346 * 309.91980 * 1 2 3 29 29 H 1.08997 * 109.46799 * 69.91987 * 1 2 3 30 30 H 1.09009 * 109.46730 * 189.91542 * 1 2 3 31 31 H 1.09004 * 109.57834 * 280.36812 * 4 2 1 32 32 H 1.09002 * 109.57738 * 40.74821 * 4 2 1 33 33 H 1.09003 * 109.47183 * 309.99940 * 6 5 4 34 34 H 1.09002 * 109.46681 * 69.99888 * 6 5 4 35 35 H 1.08002 * 120.00177 * 359.97438 * 8 7 6 36 36 H 1.07999 * 119.99778 * 180.29308 * 9 8 7 37 37 H 1.08003 * 119.99880 * 179.76845 * 10 9 8 38 38 H 1.07997 * 120.00073 * 179.97438 * 11 10 9 39 39 H 1.08005 * 119.99859 * 0.02562 * 12 7 6 40 40 H 1.09004 * 108.88151 * 79.08412 * 13 5 4 41 41 H 1.08998 * 108.88142 * 197.64730 * 13 5 4 42 42 H 1.09003 * 108.95330 * 79.22772 * 14 13 5 43 43 H 1.08997 * 108.95019 * 197.96516 * 14 13 5 44 44 H 1.09002 * 109.63535 * 332.85266 * 15 14 13 45 45 H 1.08994 * 109.63404 * 212.25599 * 15 14 13 46 46 H 1.09003 * 109.46820 * 45.31343 * 17 16 2 47 47 H 1.09003 * 109.47120 * 285.31081 * 17 16 2 48 48 H 1.09006 * 109.46928 * 60.00013 * 18 17 16 49 49 H 1.08994 * 109.47330 * 300.00184 * 18 17 16 50 50 H 1.09006 * 109.47373 * 60.00273 * 19 18 17 51 51 H 1.08997 * 109.47811 * 300.00118 * 19 18 17 52 52 H 0.97003 * 119.99726 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8838 1.0310 0.0000 4 6 2.0293 -0.7011 -1.2793 5 7 3.4013 -0.3133 -1.5194 6 6 3.6403 -0.0817 -2.9502 7 6 5.1190 0.0776 -3.1932 8 6 5.6977 1.3317 -3.1356 9 6 7.0550 1.4772 -3.3533 10 6 7.8317 0.3700 -3.6393 11 6 7.2520 -0.8833 -3.7025 12 6 5.8957 -1.0295 -3.4793 13 6 4.3966 -1.2567 -0.9611 14 6 4.0110 -1.7562 0.4404 15 6 3.4570 -0.6510 1.3040 16 7 1.9848 -0.6369 1.1611 17 6 1.3452 -0.0717 2.3566 18 6 1.5719 -1.0065 3.5465 19 6 0.9052 -0.4181 4.7914 20 6 1.1290 -1.3385 5.9636 21 1 1.6909 -2.2516 5.8336 22 6 0.6163 -1.0149 7.2020 23 7 -0.0675 0.0972 7.3604 24 14 0.8943 -2.1555 8.6550 25 1 0.2461 -1.5851 9.8631 26 1 0.3052 -3.4863 8.3594 27 1 2.3519 -2.3022 8.8973 28 1 -0.3634 0.6595 0.7881 29 1 -0.3633 0.3528 -0.9652 30 1 -0.3633 -1.0124 0.1770 31 1 1.9727 -1.7818 -1.1494 32 1 1.4114 -0.4003 -2.1255 33 1 3.2674 -0.9309 -3.5230 34 1 3.1209 0.8240 -3.2633 35 1 5.0900 2.1973 -2.9168 36 1 7.5079 2.4563 -3.3036 37 1 8.8916 0.4842 -3.8130 38 1 7.8588 -1.7482 -3.9264 39 1 5.4426 -2.0087 -3.5290 40 1 4.4840 -2.1136 -1.6292 41 1 5.3629 -0.7559 -0.9021 42 1 3.2596 -2.5397 0.3427 43 1 4.8951 -2.1720 0.9237 44 1 3.8654 0.3064 0.9804 45 1 3.7221 -0.8323 2.3456 46 1 0.2753 0.0375 2.1790 47 1 1.7791 0.9045 2.5737 48 1 2.6418 -1.1157 3.7240 49 1 1.1381 -1.9826 3.3295 50 1 -0.1647 -0.3092 4.6136 51 1 1.3385 0.5582 5.0087 52 1 -0.4285 0.3247 8.2315 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077371720.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:30 Heat of formation + Delta-G solvation = 17.258848 kcal Electronic energy + Delta-G solvation = -26765.158681 eV Core-core repulsion = 23342.539117 eV Total energy + Delta-G solvation = -3422.619564 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.11429 -40.02540 -37.64511 -35.75422 -34.37614 -33.76644 -32.37242 -31.76417 -30.24414 -28.71310 -27.31441 -26.88527 -24.66697 -24.08147 -23.44946 -22.33650 -21.72257 -20.87703 -20.62680 -18.48594 -17.71948 -17.24608 -16.86699 -16.55139 -16.48354 -16.39306 -15.85745 -15.66264 -15.43032 -15.26689 -14.52290 -14.28956 -14.21226 -14.00844 -13.97078 -13.64746 -13.60086 -13.39111 -13.29920 -12.90245 -12.77894 -12.60445 -12.51519 -12.45374 -12.20245 -12.07052 -11.95017 -11.87466 -11.71821 -11.60463 -11.51680 -11.35488 -11.08506 -11.03314 -10.52948 -9.77697 -9.68294 -9.08187 -9.04027 -8.18800 -6.29776 0.43765 0.53757 1.39844 1.43351 1.51200 2.41638 2.74008 3.00920 3.13895 3.18220 3.78043 3.88480 3.96270 3.98854 4.12182 4.16910 4.19160 4.30528 4.32055 4.35192 4.40351 4.45228 4.52488 4.62728 4.65613 4.72786 4.73398 4.77774 4.78901 4.81528 4.85907 4.94096 4.97234 5.02530 5.10488 5.14004 5.18166 5.20107 5.25756 5.28074 5.37061 5.43236 5.54554 5.58973 5.65794 5.72955 5.77790 5.87774 6.12466 6.13146 6.20275 6.27598 6.36394 6.65398 6.87000 7.39070 8.92930 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.021411 B = 0.002384 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.417125 B =11743.323842 C =12369.908686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.104 3.896 3 H 0.018 0.982 4 C 0.078 3.922 5 N -0.558 5.558 6 C 0.103 3.897 7 C -0.092 4.092 8 C -0.114 4.114 9 C -0.131 4.131 10 C -0.128 4.128 11 C -0.128 4.128 12 C -0.121 4.121 13 C 0.076 3.924 14 C -0.114 4.114 15 C 0.070 3.930 16 N -0.547 5.547 17 C 0.066 3.934 18 C -0.086 4.086 19 C 0.027 3.973 20 C -0.542 4.542 21 H 0.058 0.942 22 C -0.002 4.002 23 N -0.934 5.934 24 Si 0.965 3.035 25 H -0.282 1.282 26 H -0.266 1.266 27 H -0.267 1.267 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.050 0.950 34 H 0.087 0.913 35 H 0.123 0.877 36 H 0.134 0.866 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.125 0.875 40 H 0.042 0.958 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.036 0.964 45 H 0.062 0.938 46 H 0.079 0.921 47 H 0.014 0.986 48 H 0.046 0.954 49 H 0.050 0.950 50 H -0.008 1.008 51 H -0.013 1.013 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.343 -0.867 -27.321 29.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.007 4.007 3 H 0.036 0.964 4 C -0.050 4.050 5 N -0.282 5.282 6 C -0.024 4.024 7 C -0.092 4.092 8 C -0.133 4.133 9 C -0.149 4.149 10 C -0.147 4.147 11 C -0.146 4.146 12 C -0.139 4.139 13 C -0.051 4.051 14 C -0.152 4.152 15 C -0.056 4.056 16 N -0.272 5.272 17 C -0.061 4.061 18 C -0.124 4.124 19 C -0.010 4.010 20 C -0.580 4.580 21 H 0.076 0.924 22 C -0.199 4.199 23 N -0.574 5.574 24 Si 0.789 3.211 25 H -0.207 1.207 26 H -0.191 1.191 27 H -0.192 1.192 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.068 0.932 34 H 0.105 0.895 35 H 0.141 0.859 36 H 0.152 0.848 37 H 0.156 0.844 38 H 0.155 0.845 39 H 0.143 0.857 40 H 0.060 0.940 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.055 0.945 45 H 0.080 0.920 46 H 0.097 0.903 47 H 0.033 0.967 48 H 0.065 0.935 49 H 0.069 0.931 50 H 0.010 0.990 51 H 0.005 0.995 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.167 -0.809 -27.037 29.659 hybrid contribution 0.033 -0.040 0.891 0.893 sum 12.199 -0.849 -26.145 28.864 Atomic orbital electron populations 1.22043 0.94104 1.02242 1.02239 1.20466 0.95013 0.95108 0.90143 0.96437 1.21897 0.88252 0.98408 0.96485 1.60782 1.03507 1.49428 1.14530 1.21107 0.92146 1.01716 0.87400 1.19866 0.95578 0.93788 0.99975 1.21198 0.95501 0.97189 0.99384 1.21417 0.93933 0.99768 0.99739 1.21451 1.00808 0.92729 0.99669 1.21392 0.94997 0.98208 1.00009 1.21241 0.94436 0.98290 0.99976 1.22330 0.94848 0.93527 0.94368 1.21424 1.01092 0.98040 0.94687 1.21712 0.86329 0.98242 0.99366 1.59328 1.07494 1.58296 1.02073 1.22112 0.99503 0.94899 0.89569 1.21387 0.99396 0.98300 0.93267 1.18955 0.94410 0.94814 0.92857 1.21656 1.33998 1.07224 0.95114 0.92361 1.25998 0.94804 0.96960 1.02167 1.70095 1.37136 1.25464 1.24695 0.85503 0.78754 0.78953 0.77858 1.20748 1.19126 1.19202 0.93315 0.90309 0.92200 0.93428 0.89218 0.93189 0.89513 0.85879 0.84785 0.84430 0.84469 0.85667 0.94001 0.91779 0.91563 0.90349 0.94520 0.92002 0.90325 0.96748 0.93510 0.93079 0.99003 0.99492 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 8.29 71.98 0.60 -2.93 16 2 C 0.10 2.68 2.17 46.56 0.10 2.78 16 3 H 0.02 0.52 8.07 -2.39 -0.02 0.50 16 4 C 0.08 1.62 4.77 87.14 0.42 2.04 16 5 N -0.56 -11.33 4.10 -899.75 -3.69 -15.02 16 6 C 0.10 1.68 5.12 85.56 0.44 2.12 16 7 C -0.09 -1.56 4.05 -19.87 -0.08 -1.64 16 8 C -0.11 -1.96 9.70 22.27 0.22 -1.74 16 9 C -0.13 -2.00 10.05 22.27 0.22 -1.77 16 10 C -0.13 -1.80 10.05 22.27 0.22 -1.57 16 11 C -0.13 -1.81 10.05 22.27 0.22 -1.58 16 12 C -0.12 -1.87 8.03 22.27 0.18 -1.69 16 13 C 0.08 1.56 4.12 86.32 0.36 1.91 16 14 C -0.11 -2.70 5.36 30.12 0.16 -2.54 16 15 C 0.07 2.05 5.16 85.39 0.44 2.49 16 16 N -0.55 -16.73 3.90 -886.10 -3.45 -20.18 16 17 C 0.07 2.43 4.63 86.30 0.40 2.83 16 18 C -0.09 -3.73 5.15 30.59 0.16 -3.57 16 19 C 0.03 1.49 4.97 29.85 0.15 1.64 16 20 C -0.54 -31.85 9.11 25.60 0.23 -31.62 16 21 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 22 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 23 N -0.93 -58.07 13.29 21.45 0.28 -57.78 16 24 Si 0.97 45.19 29.54 68.60 2.03 47.21 16 25 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 27 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 28 H 0.05 1.29 6.35 -2.39 -0.02 1.27 16 29 H 0.08 1.45 7.88 -2.39 -0.02 1.43 16 30 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.05 1.06 6.93 -2.38 -0.02 1.04 16 32 H 0.09 1.50 7.29 -2.39 -0.02 1.48 16 33 H 0.05 0.73 8.02 -2.39 -0.02 0.71 16 34 H 0.09 1.33 8.08 -2.39 -0.02 1.31 16 35 H 0.12 2.00 8.06 -2.91 -0.02 1.97 16 36 H 0.13 1.57 8.06 -2.91 -0.02 1.55 16 37 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 38 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 39 H 0.13 1.67 7.45 -2.91 -0.02 1.65 16 40 H 0.04 0.77 6.82 -2.38 -0.02 0.75 16 41 H 0.06 1.41 7.06 -2.39 -0.02 1.39 16 42 H 0.07 1.67 7.23 -2.39 -0.02 1.66 16 43 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.04 1.12 7.57 -2.39 -0.02 1.10 16 45 H 0.06 2.00 5.90 -2.39 -0.01 1.99 16 46 H 0.08 2.86 5.34 -2.39 -0.01 2.85 16 47 H 0.01 0.56 8.12 -2.39 -0.02 0.54 16 48 H 0.05 2.01 6.28 -2.38 -0.01 2.00 16 49 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 50 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 51 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 52 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -66.14 391.76 0.92 -65.22 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.86 Total: 15.04 kcal Atomic # 6 Polarization: -39.38 SS G_CDS: 4.90 Total: -34.49 kcal Atomic # 7 Polarization: -86.13 SS G_CDS: -6.86 Total: -92.99 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -66.14 0.92 -65.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077371720.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.477 kcal (2) G-P(sol) polarization free energy of solvation -66.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds