Wall clock time and date at job start Tue Mar 31 2020 11:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 108.97310 * 2 1 4 4 C 1.50780 * 108.99852 * 118.83928 * 2 1 3 5 5 N 1.47680 * 108.09561 * 215.24681 * 4 2 1 6 6 C 1.46897 * 111.00127 * 151.97529 * 5 4 2 7 7 C 1.50700 * 109.47186 * 194.69079 * 6 5 4 8 8 C 1.38233 * 119.99915 * 269.72548 * 7 6 5 9 9 C 1.38236 * 119.99678 * 179.81185 * 8 7 6 10 10 C 1.38232 * 120.00099 * 0.39374 * 9 8 7 11 11 C 1.38226 * 120.00202 * 359.85844 * 10 9 8 12 12 C 1.38234 * 120.00181 * 359.95840 * 11 10 9 13 13 C 1.40085 * 114.57328 * 278.67399 * 5 4 2 14 14 C 1.54523 * 111.44886 * 61.48117 * 13 5 4 15 15 C 1.50792 * 108.92639 * 283.90398 * 14 13 5 16 16 N 1.47743 * 108.99101 * 241.24128 * 2 1 3 17 17 C 1.46898 * 111.00218 * 324.31349 * 16 2 1 18 18 C 1.52999 * 109.47499 * 170.00392 * 17 16 2 19 19 C 1.52997 * 109.47162 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46783 * 179.97438 * 19 18 17 21 21 H 1.07997 * 120.00711 * 359.97438 * 20 19 18 22 22 C 1.37883 * 119.99731 * 180.02562 * 20 19 18 23 23 N 1.31512 * 120.00166 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99987 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47192 * 59.99427 * 24 22 20 26 26 H 1.48492 * 109.47240 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.47147 * 299.99813 * 24 22 20 28 28 H 1.09006 * 109.46601 * 301.15808 * 1 2 3 29 29 H 1.08992 * 109.47329 * 61.15740 * 1 2 3 30 30 H 1.09000 * 109.46599 * 181.16179 * 1 2 3 31 31 H 1.09001 * 109.73452 * 95.59094 * 4 2 1 32 32 H 1.09002 * 109.73236 * 334.89460 * 4 2 1 33 33 H 1.09002 * 109.47005 * 314.69050 * 6 5 4 34 34 H 1.09001 * 109.47171 * 74.69113 * 6 5 4 35 35 H 1.07997 * 120.00120 * 359.97438 * 8 7 6 36 36 H 1.08004 * 119.99932 * 180.23335 * 9 8 7 37 37 H 1.08006 * 119.99886 * 179.83526 * 10 9 8 38 38 H 1.08006 * 120.00333 * 179.97438 * 11 10 9 39 39 H 1.08000 * 120.00825 * 180.02562 * 12 11 10 40 40 H 1.09002 * 109.07407 * 181.96925 * 13 5 4 41 41 H 1.08995 * 109.07312 * 300.99608 * 13 5 4 42 42 H 1.08999 * 109.55540 * 43.80880 * 14 13 5 43 43 H 1.08997 * 109.55335 * 164.12565 * 14 13 5 44 44 H 1.09003 * 108.82412 * 331.85858 * 15 14 13 45 45 H 1.09001 * 108.72552 * 213.54684 * 15 14 13 46 46 H 1.09007 * 109.47039 * 290.00173 * 17 16 2 47 47 H 1.09002 * 109.47302 * 49.99832 * 17 16 2 48 48 H 1.09007 * 109.46796 * 299.99930 * 18 17 16 49 49 H 1.09002 * 109.47301 * 59.99440 * 18 17 16 50 50 H 1.08994 * 109.47341 * 299.99538 * 19 18 17 51 51 H 1.08998 * 109.47468 * 60.00084 * 19 18 17 52 52 H 0.97003 * 119.99829 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8844 1.0308 0.0000 4 6 2.0209 -0.6877 1.2488 5 7 3.2542 -0.0072 1.6926 6 6 3.4265 -0.1252 3.1467 7 6 4.4676 0.8606 3.6108 8 6 5.7979 0.4884 3.6611 9 6 6.7534 1.3939 4.0832 10 6 6.3774 2.6689 4.4626 11 6 5.0465 3.0394 4.4172 12 6 4.0915 2.1352 3.9915 13 6 4.4145 -0.4045 1.0157 14 6 4.3211 -0.0952 -0.4953 15 6 3.4219 -1.1143 -1.1485 16 7 2.0108 -0.6721 -1.2247 17 6 1.1289 -1.7874 -1.5940 18 6 1.5071 -2.2974 -2.9860 19 6 0.5890 -3.4594 -3.3703 20 6 0.9612 -3.9613 -4.7416 21 1 1.7712 -3.4977 -5.2849 22 6 0.2668 -5.0118 -5.3031 23 7 -0.7200 -5.5761 -4.6418 24 14 0.7286 -5.6345 -7.0027 25 1 2.1385 -6.1007 -6.9929 26 1 -0.1626 -6.7622 -7.3757 27 1 0.5774 -4.5359 -7.9904 28 1 -0.3633 0.5318 0.8795 29 1 -0.3633 0.4957 -0.9001 30 1 -0.3632 -1.0275 0.0208 31 1 2.2352 -1.7343 1.0327 32 1 1.2622 -0.6201 2.0286 33 1 2.4793 0.0859 3.6431 34 1 3.7485 -1.1369 3.3935 35 1 6.0911 -0.5089 3.3683 36 1 7.7932 1.1044 4.1190 37 1 7.1237 3.3755 4.7948 38 1 4.7528 4.0355 4.7140 39 1 3.0516 2.4247 3.9556 40 1 5.2704 0.1242 1.4354 41 1 4.5567 -1.4766 1.1517 42 1 3.9076 0.9031 -0.6385 43 1 5.3147 -0.1476 -0.9405 44 1 3.4689 -2.0418 -0.5780 45 1 3.7851 -1.3052 -2.1584 46 1 1.2399 -2.5938 -0.8690 47 1 0.0940 -1.4452 -1.6012 48 1 1.3961 -1.4910 -3.7110 49 1 2.5420 -2.6396 -2.9788 50 1 0.7004 -4.2656 -2.6453 51 1 -0.4460 -3.1176 -3.3774 52 1 -1.2083 -6.3155 -5.0367 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077371721.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:33 Heat of formation + Delta-G solvation = 32.157368 kcal Electronic energy + Delta-G solvation = -26724.316586 eV Core-core repulsion = 23302.343071 eV Total energy + Delta-G solvation = -3421.973515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.38257 -39.17507 -36.64400 -33.84268 -33.37597 -32.26978 -31.18487 -31.14585 -29.03088 -27.42596 -26.34797 -25.49199 -23.38160 -22.84126 -22.71293 -21.50005 -20.66630 -20.26126 -18.64066 -17.06516 -16.46685 -16.23179 -15.97436 -15.79118 -15.42416 -15.06499 -14.56178 -14.43518 -14.26957 -14.06707 -13.66789 -13.34355 -13.24778 -13.06164 -12.86946 -12.63351 -12.31561 -12.08688 -11.86879 -11.78047 -11.51386 -11.38705 -11.26127 -11.20323 -11.07314 -10.95952 -10.79739 -10.65899 -10.49536 -10.34728 -10.23899 -9.51744 -9.26098 -9.15382 -9.04434 -9.01107 -8.45100 -8.30412 -7.76356 -5.96081 -3.97791 1.06577 1.15189 3.35858 3.39748 3.40757 3.42723 3.94007 4.12083 4.48321 4.49966 4.56754 4.74533 4.80203 4.87148 4.95103 4.97085 5.01065 5.19257 5.23529 5.32003 5.34961 5.39465 5.40933 5.41093 5.52383 5.60707 5.66212 5.73716 5.78145 5.82459 5.86137 5.86782 5.93377 6.04260 6.15976 6.19689 6.23028 6.25328 6.32268 6.37355 6.41499 6.44223 6.73013 6.77739 6.88387 6.92714 7.16804 7.23096 7.54225 7.55271 7.72910 7.88947 8.04848 8.48755 9.09257 9.65774 11.15309 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.028872 B = 0.002258 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.572724 B =12396.635227 C =12870.500905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.087 3.913 3 H 0.090 0.910 4 C 0.039 3.961 5 N -0.543 5.543 6 C 0.097 3.903 7 C -0.075 4.075 8 C -0.115 4.115 9 C -0.122 4.122 10 C -0.123 4.123 11 C -0.122 4.122 12 C -0.098 4.098 13 C 0.064 3.936 14 C -0.119 4.119 15 C 0.059 3.941 16 N -0.540 5.540 17 C 0.052 3.948 18 C -0.105 4.105 19 C 0.023 3.977 20 C -0.517 4.517 21 H 0.054 0.946 22 C 0.055 3.945 23 N -0.897 5.897 24 Si 0.892 3.108 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.277 1.277 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.042 0.958 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.041 0.959 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.076 0.924 41 H 0.017 0.983 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.027 0.973 45 H 0.077 0.923 46 H 0.022 0.978 47 H 0.079 0.921 48 H 0.054 0.946 49 H 0.044 0.956 50 H 0.011 0.989 51 H 0.015 0.985 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.349 16.031 20.776 28.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.021 4.021 3 H 0.108 0.892 4 C -0.089 4.089 5 N -0.267 5.267 6 C -0.030 4.030 7 C -0.076 4.076 8 C -0.133 4.133 9 C -0.140 4.140 10 C -0.141 4.141 11 C -0.140 4.140 12 C -0.116 4.116 13 C -0.065 4.065 14 C -0.157 4.157 15 C -0.068 4.068 16 N -0.266 5.266 17 C -0.075 4.075 18 C -0.143 4.143 19 C -0.015 4.015 20 C -0.556 4.556 21 H 0.072 0.928 22 C -0.146 4.146 23 N -0.537 5.537 24 Si 0.720 3.280 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.202 1.202 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.059 0.941 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.094 0.906 41 H 0.035 0.965 42 H 0.101 0.899 43 H 0.091 0.909 44 H 0.045 0.955 45 H 0.095 0.905 46 H 0.040 0.960 47 H 0.097 0.903 48 H 0.073 0.927 49 H 0.062 0.938 50 H 0.030 0.970 51 H 0.033 0.967 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.138 16.656 20.279 28.508 hybrid contribution 0.442 -1.953 -0.126 2.006 sum 11.580 14.703 20.153 27.504 Atomic orbital electron populations 1.22112 0.94694 1.02310 1.02061 1.21504 0.94560 0.99316 0.86732 0.89243 1.22568 0.91026 0.96452 0.98902 1.59030 1.03730 1.60760 1.03202 1.21050 0.97734 0.95943 0.88290 1.19784 0.94047 0.95173 0.98547 1.21081 0.92698 0.99663 0.99880 1.21113 0.99315 0.93922 0.99616 1.21143 0.96217 0.96443 1.00299 1.21157 0.93231 0.99507 1.00087 1.21025 0.99701 0.92802 0.98099 1.21220 0.92756 0.97468 0.95036 1.21586 0.99603 1.01049 0.93455 1.21861 0.88160 0.95866 1.00930 1.62242 1.01787 1.30321 1.32219 1.22436 0.97009 0.90334 0.97764 1.21655 0.99957 0.99245 0.93455 1.19057 0.94446 0.91951 0.96024 1.21225 1.16648 1.15828 1.01859 0.92782 1.25033 0.95134 0.96714 0.97685 1.69957 1.21598 1.24244 1.37858 0.86665 0.78286 0.78360 0.84727 1.20315 1.21346 1.20212 0.92577 0.91453 0.92064 0.93935 0.90478 0.89906 0.94119 0.86403 0.86218 0.86303 0.86158 0.85973 0.90569 0.96473 0.89897 0.90927 0.95503 0.90488 0.95994 0.90261 0.92679 0.93756 0.97019 0.96668 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 7.67 37.16 0.29 -1.56 16 2 C 0.09 1.12 2.41 -68.36 -0.16 0.95 16 3 H 0.09 1.19 7.19 -51.93 -0.37 0.82 16 4 C 0.04 0.45 4.85 -4.51 -0.02 0.43 16 5 N -0.54 -5.84 3.98 -241.14 -0.96 -6.80 16 6 C 0.10 0.89 5.12 -4.98 -0.03 0.87 16 7 C -0.07 -0.69 4.85 -104.62 -0.51 -1.19 16 8 C -0.11 -1.00 7.89 -39.58 -0.31 -1.31 16 9 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 10 C -0.12 -0.94 10.05 -39.59 -0.40 -1.34 16 11 C -0.12 -0.96 10.05 -39.59 -0.40 -1.36 16 12 C -0.10 -0.85 9.70 -39.58 -0.38 -1.23 16 13 C 0.06 0.71 4.76 -6.55 -0.03 0.68 16 14 C -0.12 -1.42 5.68 -27.04 -0.15 -1.57 16 15 C 0.06 0.85 4.33 -4.29 -0.02 0.83 16 16 N -0.54 -8.27 4.71 -227.66 -1.07 -9.34 16 17 C 0.05 0.91 4.02 -3.83 -0.02 0.90 16 18 C -0.11 -2.25 4.99 -26.73 -0.13 -2.38 16 19 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 20 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 21 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 22 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 23 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 24 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 29 H 0.07 0.85 8.01 -51.93 -0.42 0.44 16 30 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 31 H 0.04 0.57 6.37 -51.93 -0.33 0.24 16 32 H 0.08 0.79 7.10 -51.93 -0.37 0.42 16 33 H 0.08 0.69 7.62 -51.93 -0.40 0.29 16 34 H 0.04 0.38 8.05 -51.93 -0.42 -0.04 16 35 H 0.12 0.94 7.94 -52.49 -0.42 0.52 16 36 H 0.12 0.74 8.06 -52.48 -0.42 0.31 16 37 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 38 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 40 H 0.08 0.80 5.41 -51.93 -0.28 0.52 16 41 H 0.02 0.20 7.59 -51.93 -0.39 -0.19 16 42 H 0.08 1.06 7.18 -51.93 -0.37 0.69 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.03 0.41 6.34 -51.93 -0.33 0.08 16 45 H 0.08 1.19 6.98 -51.93 -0.36 0.83 16 46 H 0.02 0.40 7.74 -51.92 -0.40 0.00 16 47 H 0.08 1.39 5.59 -51.93 -0.29 1.10 16 48 H 0.05 1.20 8.14 -51.92 -0.42 0.78 16 49 H 0.04 0.94 6.71 -51.93 -0.35 0.59 16 50 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 51 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 52 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 389.98 15.07 5.88 5.88 Total: -1.00 -30.69 389.98 -12.84 -43.53 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -9.18 Total: -1.69 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: -3.23 Total: -21.97 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: -1.30 Total: -42.77 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.69 -12.84 -43.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077371721.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.690 kcal (2) G-P(sol) polarization free energy of solvation -30.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds