Wall clock time and date at job start Tue Mar 31 2020 11:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 108.97310 * 2 1 4 4 C 1.50780 * 108.99852 * 118.83928 * 2 1 3 5 5 N 1.47680 * 108.09561 * 215.24681 * 4 2 1 6 6 C 1.46897 * 111.00127 * 151.97529 * 5 4 2 7 7 C 1.50700 * 109.47186 * 194.69079 * 6 5 4 8 8 C 1.38233 * 119.99915 * 269.72548 * 7 6 5 9 9 C 1.38236 * 119.99678 * 179.81185 * 8 7 6 10 10 C 1.38232 * 120.00099 * 0.39374 * 9 8 7 11 11 C 1.38226 * 120.00202 * 359.85844 * 10 9 8 12 12 C 1.38234 * 120.00181 * 359.95840 * 11 10 9 13 13 C 1.40085 * 114.57328 * 278.67399 * 5 4 2 14 14 C 1.54523 * 111.44886 * 61.48117 * 13 5 4 15 15 C 1.50792 * 108.92639 * 283.90398 * 14 13 5 16 16 N 1.47743 * 108.99101 * 241.24128 * 2 1 3 17 17 C 1.46898 * 111.00218 * 324.31349 * 16 2 1 18 18 C 1.52999 * 109.47499 * 170.00392 * 17 16 2 19 19 C 1.52997 * 109.47162 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46783 * 179.97438 * 19 18 17 21 21 H 1.07997 * 120.00711 * 359.97438 * 20 19 18 22 22 C 1.37883 * 119.99731 * 180.02562 * 20 19 18 23 23 N 1.31512 * 120.00166 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99987 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47192 * 59.99427 * 24 22 20 26 26 H 1.48492 * 109.47240 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.47147 * 299.99813 * 24 22 20 28 28 H 1.09006 * 109.46601 * 301.15808 * 1 2 3 29 29 H 1.08992 * 109.47329 * 61.15740 * 1 2 3 30 30 H 1.09000 * 109.46599 * 181.16179 * 1 2 3 31 31 H 1.09001 * 109.73452 * 95.59094 * 4 2 1 32 32 H 1.09002 * 109.73236 * 334.89460 * 4 2 1 33 33 H 1.09002 * 109.47005 * 314.69050 * 6 5 4 34 34 H 1.09001 * 109.47171 * 74.69113 * 6 5 4 35 35 H 1.07997 * 120.00120 * 359.97438 * 8 7 6 36 36 H 1.08004 * 119.99932 * 180.23335 * 9 8 7 37 37 H 1.08006 * 119.99886 * 179.83526 * 10 9 8 38 38 H 1.08006 * 120.00333 * 179.97438 * 11 10 9 39 39 H 1.08000 * 120.00825 * 180.02562 * 12 11 10 40 40 H 1.09002 * 109.07407 * 181.96925 * 13 5 4 41 41 H 1.08995 * 109.07312 * 300.99608 * 13 5 4 42 42 H 1.08999 * 109.55540 * 43.80880 * 14 13 5 43 43 H 1.08997 * 109.55335 * 164.12565 * 14 13 5 44 44 H 1.09003 * 108.82412 * 331.85858 * 15 14 13 45 45 H 1.09001 * 108.72552 * 213.54684 * 15 14 13 46 46 H 1.09007 * 109.47039 * 290.00173 * 17 16 2 47 47 H 1.09002 * 109.47302 * 49.99832 * 17 16 2 48 48 H 1.09007 * 109.46796 * 299.99930 * 18 17 16 49 49 H 1.09002 * 109.47301 * 59.99440 * 18 17 16 50 50 H 1.08994 * 109.47341 * 299.99538 * 19 18 17 51 51 H 1.08998 * 109.47468 * 60.00084 * 19 18 17 52 52 H 0.97003 * 119.99829 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8844 1.0308 0.0000 4 6 2.0209 -0.6877 1.2488 5 7 3.2542 -0.0072 1.6926 6 6 3.4265 -0.1252 3.1467 7 6 4.4676 0.8606 3.6108 8 6 5.7979 0.4884 3.6611 9 6 6.7534 1.3939 4.0832 10 6 6.3774 2.6689 4.4626 11 6 5.0465 3.0394 4.4172 12 6 4.0915 2.1352 3.9915 13 6 4.4145 -0.4045 1.0157 14 6 4.3211 -0.0952 -0.4953 15 6 3.4219 -1.1143 -1.1485 16 7 2.0108 -0.6721 -1.2247 17 6 1.1289 -1.7874 -1.5940 18 6 1.5071 -2.2974 -2.9860 19 6 0.5890 -3.4594 -3.3703 20 6 0.9612 -3.9613 -4.7416 21 1 1.7712 -3.4977 -5.2849 22 6 0.2668 -5.0118 -5.3031 23 7 -0.7200 -5.5761 -4.6418 24 14 0.7286 -5.6345 -7.0027 25 1 2.1385 -6.1007 -6.9929 26 1 -0.1626 -6.7622 -7.3757 27 1 0.5774 -4.5359 -7.9904 28 1 -0.3633 0.5318 0.8795 29 1 -0.3633 0.4957 -0.9001 30 1 -0.3632 -1.0275 0.0208 31 1 2.2352 -1.7343 1.0327 32 1 1.2622 -0.6201 2.0286 33 1 2.4793 0.0859 3.6431 34 1 3.7485 -1.1369 3.3935 35 1 6.0911 -0.5089 3.3683 36 1 7.7932 1.1044 4.1190 37 1 7.1237 3.3755 4.7948 38 1 4.7528 4.0355 4.7140 39 1 3.0516 2.4247 3.9556 40 1 5.2704 0.1242 1.4354 41 1 4.5567 -1.4766 1.1517 42 1 3.9076 0.9031 -0.6385 43 1 5.3147 -0.1476 -0.9405 44 1 3.4689 -2.0418 -0.5780 45 1 3.7851 -1.3052 -2.1584 46 1 1.2399 -2.5938 -0.8690 47 1 0.0940 -1.4452 -1.6012 48 1 1.3961 -1.4910 -3.7110 49 1 2.5420 -2.6396 -2.9788 50 1 0.7004 -4.2656 -2.6453 51 1 -0.4460 -3.1176 -3.3774 52 1 -1.2083 -6.3155 -5.0367 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077371721.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:32 Heat of formation + Delta-G solvation = 15.431804 kcal Electronic energy + Delta-G solvation = -26725.041861 eV Core-core repulsion = 23302.343071 eV Total energy + Delta-G solvation = -3422.698790 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.29311 -39.94869 -37.72871 -35.74055 -34.38203 -33.79377 -32.37544 -31.75233 -30.27740 -28.71191 -27.37754 -26.90016 -24.67194 -24.11782 -23.44838 -22.29447 -22.08979 -21.47993 -19.85787 -18.42744 -17.71448 -17.43433 -16.91283 -16.72519 -16.51641 -16.18208 -15.99404 -15.77092 -15.43743 -15.14563 -14.47812 -14.34312 -14.25017 -14.17319 -13.89687 -13.86623 -13.61454 -13.45221 -13.05227 -12.92905 -12.81110 -12.64274 -12.59280 -12.43002 -12.34870 -12.10127 -11.97393 -11.91790 -11.79884 -11.65509 -11.46539 -11.37968 -11.16601 -11.03811 -10.55135 -9.76018 -9.67653 -9.38935 -8.94771 -8.20523 -6.31551 0.45194 0.55327 1.38740 1.42200 1.50140 2.40217 2.71049 2.90837 3.12061 3.18134 3.74428 3.87647 3.92838 3.96176 4.01901 4.12360 4.20228 4.22436 4.28383 4.31644 4.37173 4.42975 4.48186 4.53847 4.63528 4.64419 4.68235 4.71047 4.73961 4.79722 4.83078 4.89159 4.92748 4.99160 5.05096 5.14480 5.15229 5.20730 5.21621 5.28219 5.32936 5.38527 5.51783 5.60690 5.67357 5.73931 5.74613 5.85060 6.01380 6.15939 6.18557 6.23275 6.31951 6.43963 6.84657 7.37267 8.91095 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.028872 B = 0.002258 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.572724 B =12396.635227 C =12870.500905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.091 3.909 3 H 0.092 0.908 4 C 0.045 3.955 5 N -0.544 5.544 6 C 0.099 3.901 7 C -0.087 4.087 8 C -0.127 4.127 9 C -0.129 4.129 10 C -0.128 4.128 11 C -0.128 4.128 12 C -0.109 4.109 13 C 0.071 3.929 14 C -0.111 4.111 15 C 0.062 3.938 16 N -0.546 5.546 17 C 0.067 3.933 18 C -0.090 4.090 19 C 0.028 3.972 20 C -0.543 4.543 21 H 0.057 0.943 22 C -0.002 4.002 23 N -0.933 5.933 24 Si 0.965 3.035 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.266 1.266 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.021 0.979 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.038 0.962 35 H 0.120 0.880 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.129 0.871 40 H 0.086 0.914 41 H 0.008 0.992 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.015 0.985 45 H 0.063 0.937 46 H 0.013 0.987 47 H 0.081 0.919 48 H 0.051 0.949 49 H 0.043 0.957 50 H -0.013 1.013 51 H -0.007 1.007 52 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.470 17.418 21.235 30.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 H 0.110 0.890 4 C -0.083 4.083 5 N -0.267 5.267 6 C -0.027 4.027 7 C -0.088 4.088 8 C -0.145 4.145 9 C -0.147 4.147 10 C -0.146 4.146 11 C -0.146 4.146 12 C -0.127 4.127 13 C -0.059 4.059 14 C -0.149 4.149 15 C -0.066 4.066 16 N -0.272 5.272 17 C -0.061 4.061 18 C -0.128 4.128 19 C -0.009 4.009 20 C -0.581 4.581 21 H 0.076 0.924 22 C -0.199 4.199 23 N -0.573 5.573 24 Si 0.790 3.210 25 H -0.193 1.193 26 H -0.207 1.207 27 H -0.191 1.191 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.039 0.961 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.056 0.944 35 H 0.138 0.862 36 H 0.153 0.847 37 H 0.157 0.843 38 H 0.156 0.844 39 H 0.147 0.853 40 H 0.104 0.896 41 H 0.026 0.974 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.033 0.967 45 H 0.081 0.919 46 H 0.031 0.969 47 H 0.100 0.900 48 H 0.069 0.931 49 H 0.061 0.939 50 H 0.005 0.995 51 H 0.011 0.989 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.271 18.062 20.755 30.126 hybrid contribution 0.105 -2.348 -0.209 2.360 sum 12.376 15.713 20.546 28.674 Atomic orbital electron populations 1.22084 0.93972 1.01868 1.02934 1.21537 0.95126 0.98957 0.86108 0.88998 1.22465 0.91990 0.95003 0.98873 1.59048 1.03230 1.60239 1.04210 1.21069 0.98510 0.96007 0.87164 1.19819 0.94143 0.95450 0.99366 1.21215 0.92877 1.00084 1.00335 1.21376 1.00056 0.94029 0.99254 1.21456 0.96720 0.96720 0.99725 1.21440 0.93292 1.00244 0.99659 1.21205 1.00392 0.92819 0.98282 1.21151 0.93301 0.96996 0.94423 1.21537 0.99614 0.99692 0.94031 1.21861 0.88108 0.96361 1.00228 1.62178 1.01846 1.28916 1.34237 1.22131 0.97651 0.90955 0.95321 1.21404 0.98587 0.97194 0.95567 1.18943 0.94257 0.92871 0.94853 1.21649 1.17007 1.16452 1.03009 0.92446 1.26002 0.94887 0.96818 1.02237 1.70091 1.22593 1.24725 1.39871 0.85497 0.78360 0.77972 0.79205 1.19253 1.20668 1.19112 0.89974 0.92262 0.93195 0.96052 0.88679 0.88851 0.94386 0.86201 0.84665 0.84346 0.84397 0.85272 0.89634 0.97404 0.90342 0.89456 0.96653 0.91854 0.96867 0.90048 0.93057 0.93859 0.99502 0.98871 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 7.67 71.98 0.55 -2.91 16 2 C 0.09 2.24 2.41 44.03 0.11 2.34 16 3 H 0.09 2.29 7.19 -2.38 -0.02 2.28 16 4 C 0.04 1.00 4.85 85.43 0.41 1.41 16 5 N -0.54 -11.03 3.98 -916.85 -3.65 -14.68 16 6 C 0.10 1.70 5.12 85.56 0.44 2.14 16 7 C -0.09 -1.48 4.85 -19.86 -0.10 -1.57 16 8 C -0.13 -2.05 7.89 22.27 0.18 -1.87 16 9 C -0.13 -1.83 10.05 22.27 0.22 -1.61 16 10 C -0.13 -1.69 10.05 22.27 0.22 -1.47 16 11 C -0.13 -1.77 10.05 22.27 0.22 -1.54 16 12 C -0.11 -1.70 9.70 22.27 0.22 -1.48 16 13 C 0.07 1.50 4.76 88.05 0.42 1.92 16 14 C -0.11 -2.54 5.68 30.40 0.17 -2.37 16 15 C 0.06 1.78 4.33 85.36 0.37 2.15 16 16 N -0.55 -16.70 4.71 -874.19 -4.12 -20.82 16 17 C 0.07 2.43 4.02 86.30 0.35 2.78 16 18 C -0.09 -3.93 4.99 30.59 0.15 -3.78 16 19 C 0.03 1.56 4.97 29.85 0.15 1.70 16 20 C -0.54 -32.01 9.11 25.60 0.23 -31.78 16 21 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 22 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 23 N -0.93 -57.86 13.29 21.45 0.28 -57.58 16 24 Si 0.97 45.24 29.54 68.60 2.03 47.26 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 26 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 27 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 28 H 0.08 1.45 8.09 -2.38 -0.02 1.43 16 29 H 0.06 1.46 8.01 -2.39 -0.02 1.44 16 30 H 0.05 1.26 6.44 -2.39 -0.02 1.24 16 31 H 0.02 0.57 6.37 -2.39 -0.02 0.56 16 32 H 0.09 1.78 7.10 -2.39 -0.02 1.76 16 33 H 0.09 1.39 7.62 -2.39 -0.02 1.37 16 34 H 0.04 0.67 8.05 -2.39 -0.02 0.66 16 35 H 0.12 1.80 7.94 -2.91 -0.02 1.78 16 36 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 37 H 0.14 1.21 8.06 -2.91 -0.02 1.18 16 38 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 39 H 0.13 1.75 8.06 -2.91 -0.02 1.72 16 40 H 0.09 1.68 5.41 -2.39 -0.01 1.67 16 41 H 0.01 0.19 7.59 -2.39 -0.02 0.17 16 42 H 0.08 1.90 7.18 -2.39 -0.02 1.89 16 43 H 0.09 1.74 8.14 -2.39 -0.02 1.73 16 44 H 0.02 0.48 6.34 -2.39 -0.02 0.46 16 45 H 0.06 1.98 6.98 -2.39 -0.02 1.96 16 46 H 0.01 0.50 7.74 -2.38 -0.02 0.48 16 47 H 0.08 2.92 5.59 -2.39 -0.01 2.91 16 48 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 49 H 0.04 1.88 6.71 -2.39 -0.02 1.87 16 50 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 51 H -0.01 -0.42 8.14 -2.39 -0.02 -0.43 16 52 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -66.25 389.98 0.19 -66.06 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.86 Total: 15.34 kcal Atomic # 6 Polarization: -40.36 SS G_CDS: 4.78 Total: -35.58 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -7.48 Total: -93.08 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -66.25 0.19 -66.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077371721.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.487 kcal (2) G-P(sol) polarization free energy of solvation -66.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds