Wall clock time and date at job start Tue Mar 31 2020 11:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47143 * 2 1 4 4 C 1.53004 * 109.47314 * 240.00311 * 2 1 3 5 5 C 1.53006 * 109.46660 * 299.99829 * 4 2 1 6 6 C 1.53005 * 109.46839 * 299.99898 * 5 4 2 7 7 C 1.52992 * 109.47283 * 60.00315 * 6 5 4 8 8 H 1.09004 * 109.47812 * 59.99742 * 7 6 5 9 9 C 1.53005 * 109.47283 * 179.97438 * 7 6 5 10 10 C 1.52997 * 109.46650 * 294.99757 * 9 7 6 11 11 N 1.46905 * 109.46937 * 179.97438 * 10 9 7 12 12 C 1.46900 * 110.99798 * 66.04902 * 11 10 9 13 13 C 1.50692 * 109.47252 * 63.33329 * 12 11 10 14 14 H 1.08001 * 120.00116 * 4.77481 * 13 12 11 15 15 C 1.37883 * 119.99859 * 184.77909 * 13 12 11 16 16 N 1.31513 * 119.99929 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00048 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47293 * 89.99663 * 17 15 13 19 19 H 1.48505 * 109.47405 * 209.99665 * 17 15 13 20 20 H 1.48498 * 109.47347 * 329.99880 * 17 15 13 21 21 C 1.46901 * 111.00206 * 190.00214 * 11 10 9 22 22 C 1.50693 * 109.47460 * 163.96753 * 21 11 10 23 23 C 1.38232 * 119.61782 * 94.72704 * 22 21 11 24 24 C 1.38623 * 119.16087 * 179.71729 * 23 22 21 25 25 C 1.38673 * 118.42098 * 0.54309 * 24 23 22 26 26 C 1.38179 * 119.16358 * 359.73957 * 25 24 23 27 27 N 1.31850 * 119.62080 * 275.00483 * 22 21 11 28 28 C 1.52996 * 109.47425 * 119.99828 * 2 1 3 29 29 H 1.09001 * 109.47016 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47055 * 299.99801 * 1 2 3 31 31 H 1.08995 * 109.47451 * 60.00167 * 1 2 3 32 32 H 1.08997 * 109.47407 * 180.02562 * 4 2 1 33 33 H 1.08995 * 109.47252 * 59.99400 * 4 2 1 34 34 H 1.08999 * 109.47025 * 180.02562 * 5 4 2 35 35 H 1.08995 * 109.47018 * 59.99493 * 5 4 2 36 36 H 1.09001 * 109.46712 * 180.02562 * 6 5 4 37 37 H 1.08995 * 109.46984 * 299.99616 * 6 5 4 38 38 H 1.08993 * 109.46982 * 54.99426 * 9 7 6 39 39 H 1.09003 * 109.47053 * 175.00020 * 9 7 6 40 40 H 1.09004 * 109.47665 * 299.99523 * 10 9 7 41 41 H 1.08997 * 109.47439 * 59.99941 * 10 9 7 42 42 H 1.09001 * 109.46965 * 183.33599 * 12 11 10 43 43 H 1.09000 * 109.46790 * 303.32803 * 12 11 10 44 44 H 0.96998 * 119.99930 * 180.02562 * 16 15 13 45 45 H 1.09001 * 109.46889 * 283.97111 * 21 11 10 46 46 H 1.09000 * 109.47148 * 43.96412 * 21 11 10 47 47 H 1.08003 * 120.41894 * 359.97438 * 23 22 21 48 48 H 1.07998 * 120.79466 * 180.26237 * 24 23 22 49 49 H 1.08005 * 120.42163 * 179.71445 * 25 24 23 50 50 H 1.07999 * 119.61926 * 179.97438 * 26 25 24 51 51 H 1.09007 * 109.47415 * 179.97438 * 28 2 1 52 52 H 1.09000 * 109.47513 * 299.99808 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5300 -2.1637 -1.2493 6 6 2.0401 -2.8849 0.0000 7 6 1.5301 -2.1637 1.2492 8 1 0.4400 -2.1637 1.2493 9 6 2.0396 -2.8853 2.4985 10 6 1.4291 -4.2867 2.5626 11 7 1.9187 -4.9798 3.7618 12 6 1.4278 -4.3285 4.9835 13 6 -0.0753 -4.4230 5.0340 14 1 -0.6068 -4.9835 4.2791 15 6 -0.7721 -3.7939 6.0438 16 7 -0.1249 -3.1118 6.9633 17 14 -2.6354 -3.9105 6.1060 18 1 -3.0308 -5.0954 6.9091 19 1 -3.1878 -2.6819 6.7313 20 1 -3.1692 -4.0469 4.7269 21 6 1.5473 -6.4008 3.7371 22 6 2.3756 -7.1542 4.7457 23 6 1.8721 -7.3765 6.0137 24 6 2.6397 -8.0757 6.9322 25 6 3.8953 -8.5173 6.5429 26 6 4.3343 -8.2523 5.2598 27 7 3.5743 -7.5888 4.4103 28 6 2.0400 -0.7212 1.2492 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 3.1300 -0.7216 -1.2491 33 1 1.6766 -0.2074 -2.1392 34 1 1.8937 -2.6777 -2.1390 35 1 0.4400 -2.1637 -1.2492 36 1 1.6771 -3.9127 -0.0002 37 1 3.1300 -2.8850 -0.0001 38 1 3.1259 -2.9639 2.4550 39 1 1.7513 -2.3224 3.3863 40 1 0.3427 -4.2082 2.6061 41 1 1.7173 -4.8496 1.6749 42 1 1.8526 -4.8252 5.8559 43 1 1.7261 -3.2801 4.9813 44 1 -0.6151 -2.6695 7.6739 45 1 0.4908 -6.5045 3.9843 46 1 1.7290 -6.8066 2.7419 47 1 0.8914 -7.0137 6.2841 48 1 2.2706 -8.2681 7.9288 49 1 4.5223 -9.0611 7.2340 50 1 5.3111 -8.5924 4.9490 51 1 3.1301 -0.7216 1.2490 52 1 1.6768 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089129865.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:30 Heat of formation + Delta-G solvation = 3.933819 kcal Electronic energy + Delta-G solvation = -27254.079013 eV Core-core repulsion = 23830.881633 eV Total energy + Delta-G solvation = -3423.197380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.71127 -39.20098 -36.83728 -33.37767 -32.56002 -31.91292 -31.40128 -30.88011 -27.84331 -27.15214 -26.61861 -24.75839 -23.37123 -22.92783 -22.12431 -21.76457 -20.35053 -19.40154 -18.41029 -16.65879 -16.05121 -15.78013 -15.62796 -15.09871 -14.84354 -14.60871 -14.44789 -14.13160 -13.87055 -13.68971 -13.40585 -13.02900 -12.87918 -12.75198 -12.47759 -12.28737 -12.06412 -11.92627 -11.49549 -11.42065 -11.28719 -11.17619 -10.92775 -10.89062 -10.87936 -10.74776 -10.59359 -10.22493 -10.18389 -10.01564 -9.84777 -9.75771 -9.56626 -9.41766 -9.33828 -8.90540 -8.48301 -8.42709 -7.12852 -6.04308 -4.13599 1.59933 1.78033 3.23245 3.31612 3.33725 4.24084 4.37225 4.77785 4.82842 4.84739 4.89383 5.14366 5.22022 5.25311 5.31096 5.35456 5.43101 5.48334 5.51337 5.54857 5.64818 5.68178 5.73927 5.81851 5.85536 5.94632 5.96685 6.01597 6.06774 6.12123 6.15504 6.20267 6.26721 6.32463 6.33345 6.34434 6.45320 6.47399 6.51265 6.55658 6.64255 6.67473 6.73220 6.74880 6.99992 7.04584 7.19520 7.31492 7.54283 7.90181 8.07691 8.28554 8.31179 8.55032 8.97425 9.52672 10.99904 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010200 B = 0.004168 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.474912 B = 6715.450697 C = 8810.613134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 H 0.063 0.937 4 C -0.112 4.112 5 C -0.121 4.121 6 C -0.113 4.113 7 C -0.084 4.084 8 H 0.071 0.929 9 C -0.105 4.105 10 C 0.067 3.933 11 N -0.534 5.534 12 C 0.183 3.817 13 C -0.546 4.546 14 H 0.056 0.944 15 C 0.068 3.932 16 N -0.888 5.888 17 Si 0.882 3.118 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.105 3.895 22 C 0.157 3.843 23 C -0.147 4.147 24 C -0.083 4.083 25 C -0.188 4.188 26 C 0.087 3.913 27 N -0.475 5.475 28 C -0.108 4.108 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.041 0.959 41 H 0.051 0.949 42 H 0.027 0.973 43 H 0.038 0.962 44 H 0.262 0.738 45 H 0.063 0.937 46 H 0.067 0.933 47 H 0.142 0.858 48 H 0.127 0.873 49 H 0.125 0.875 50 H 0.146 0.854 51 H 0.058 0.942 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.689 -1.607 -9.812 10.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 H 0.081 0.919 4 C -0.150 4.150 5 C -0.159 4.159 6 C -0.151 4.151 7 C -0.103 4.103 8 H 0.089 0.911 9 C -0.143 4.143 10 C -0.061 4.061 11 N -0.258 5.258 12 C 0.057 3.943 13 C -0.585 4.585 14 H 0.075 0.925 15 C -0.135 4.135 16 N -0.526 5.526 17 Si 0.710 3.290 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.024 4.024 22 C 0.019 3.981 23 C -0.167 4.167 24 C -0.109 4.109 25 C -0.208 4.208 26 C -0.071 4.071 27 N -0.184 5.184 28 C -0.145 4.145 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.045 0.955 43 H 0.056 0.944 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.086 0.914 47 H 0.160 0.840 48 H 0.145 0.855 49 H 0.143 0.857 50 H 0.164 0.836 51 H 0.077 0.923 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.490 -1.293 -10.498 11.917 hybrid contribution -2.242 -0.156 1.277 2.585 sum 3.248 -1.449 -9.220 9.882 Atomic orbital electron populations 1.21942 0.95496 1.02344 1.01042 1.21087 0.95888 0.98668 0.95309 0.91898 1.21547 1.00292 0.95919 0.97217 1.21585 1.00900 0.95456 0.97927 1.21620 1.00515 0.99014 0.93910 1.21149 1.00510 0.94036 0.94620 0.91116 1.21542 0.99933 0.95721 0.97084 1.21919 0.98138 0.94084 0.91937 1.62443 1.59073 0.99940 1.04298 1.19836 0.92849 0.95090 0.86532 1.21689 0.93224 1.32666 1.10916 0.92545 1.24913 0.97894 0.95042 0.95612 1.69944 1.35459 1.33197 1.14034 0.86751 0.86409 0.77586 0.78229 1.20692 1.21198 1.19946 1.20830 0.96145 0.89637 0.95765 1.21248 0.90527 0.92882 0.93460 1.22222 1.02362 0.98043 0.94076 1.21537 0.94093 0.95807 0.99478 1.21993 0.97360 1.03371 0.98098 1.22610 0.98915 0.95337 0.90198 1.67487 1.05077 1.09156 1.36717 1.21593 1.00254 0.95676 0.97014 0.91777 0.92803 0.93425 0.92296 0.92705 0.92699 0.91904 0.91873 0.92286 0.92441 0.91048 0.94055 0.93057 0.95513 0.94439 0.92868 0.91929 0.91437 0.84013 0.85493 0.85726 0.83634 0.92290 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.50 37.15 0.32 -1.42 16 2 C -0.09 -1.04 3.19 -90.62 -0.29 -1.33 16 3 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 4 C -0.11 -1.19 5.45 -26.73 -0.15 -1.33 16 5 C -0.12 -1.34 5.65 -26.73 -0.15 -1.50 16 6 C -0.11 -1.45 4.96 -26.73 -0.13 -1.58 16 7 C -0.08 -1.22 1.91 -90.62 -0.17 -1.39 16 8 H 0.07 1.09 6.43 -51.93 -0.33 0.76 16 9 C -0.10 -1.85 4.61 -26.73 -0.12 -1.97 16 10 C 0.07 1.28 4.53 -3.82 -0.02 1.26 16 11 N -0.53 -11.35 4.66 -237.52 -1.11 -12.45 16 12 C 0.18 4.52 4.70 -4.98 -0.02 4.50 16 13 C -0.55 -14.09 7.34 -34.44 -0.25 -14.35 16 14 H 0.06 1.45 5.95 -52.49 -0.31 1.13 16 15 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 16 N -0.89 -25.19 13.29 55.43 0.74 -24.46 16 17 Si 0.88 20.67 29.54 -169.99 -5.02 15.65 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 C 0.10 2.08 5.12 -4.98 -0.03 2.05 16 22 C 0.16 3.05 5.84 -82.59 -0.48 2.57 16 23 C -0.15 -2.74 8.46 -39.44 -0.33 -3.07 16 24 C -0.08 -1.31 10.18 -39.28 -0.40 -1.71 16 25 C -0.19 -2.68 10.11 -39.44 -0.40 -3.08 16 26 C 0.09 1.34 11.18 -17.55 -0.20 1.14 16 27 N -0.47 -8.87 10.27 -9.48 -0.10 -8.97 16 28 C -0.11 -1.43 4.73 -26.73 -0.13 -1.56 16 29 H 0.06 0.78 4.81 -51.93 -0.25 0.53 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.70 6.43 -51.93 -0.33 0.37 16 36 H 0.06 0.83 6.56 -51.93 -0.34 0.49 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 1.46 6.49 -51.93 -0.34 1.12 16 40 H 0.04 0.86 6.62 -51.93 -0.34 0.51 16 41 H 0.05 0.88 6.28 -51.93 -0.33 0.56 16 42 H 0.03 0.72 6.56 -51.93 -0.34 0.38 16 43 H 0.04 1.02 6.32 -51.93 -0.33 0.69 16 44 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 45 H 0.06 1.29 6.02 -51.93 -0.31 0.98 16 46 H 0.07 1.24 7.81 -51.93 -0.41 0.83 16 47 H 0.14 2.81 8.06 -52.48 -0.42 2.39 16 48 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 49 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 50 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 51 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 52 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 389.24 15.07 5.87 5.87 Total: -1.00 -28.39 389.24 -11.69 -40.08 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -9.02 Total: 5.31 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -3.05 Total: -21.03 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -0.47 Total: -45.88 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -28.39 -11.69 -40.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089129865.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.018 kcal (2) G-P(sol) polarization free energy of solvation -28.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds