Wall clock time and date at job start Tue Mar 31 2020 11:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47143 * 2 1 4 4 C 1.53004 * 109.47314 * 240.00311 * 2 1 3 5 5 C 1.53006 * 109.46660 * 299.99829 * 4 2 1 6 6 C 1.53005 * 109.46839 * 299.99898 * 5 4 2 7 7 C 1.52992 * 109.47283 * 60.00315 * 6 5 4 8 8 H 1.09004 * 109.47812 * 59.99742 * 7 6 5 9 9 C 1.53005 * 109.47283 * 179.97438 * 7 6 5 10 10 C 1.52997 * 109.46650 * 294.99757 * 9 7 6 11 11 N 1.46905 * 109.46937 * 179.97438 * 10 9 7 12 12 C 1.46900 * 110.99798 * 66.04902 * 11 10 9 13 13 C 1.50692 * 109.47252 * 63.33329 * 12 11 10 14 14 H 1.08001 * 120.00116 * 4.77481 * 13 12 11 15 15 C 1.37883 * 119.99859 * 184.77909 * 13 12 11 16 16 N 1.31513 * 119.99929 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00048 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47293 * 89.99663 * 17 15 13 19 19 H 1.48505 * 109.47405 * 209.99665 * 17 15 13 20 20 H 1.48498 * 109.47347 * 329.99880 * 17 15 13 21 21 C 1.46901 * 111.00206 * 190.00214 * 11 10 9 22 22 C 1.50693 * 109.47460 * 163.96753 * 21 11 10 23 23 C 1.38232 * 119.61782 * 94.72704 * 22 21 11 24 24 C 1.38623 * 119.16087 * 179.71729 * 23 22 21 25 25 C 1.38673 * 118.42098 * 0.54309 * 24 23 22 26 26 C 1.38179 * 119.16358 * 359.73957 * 25 24 23 27 27 N 1.31850 * 119.62080 * 275.00483 * 22 21 11 28 28 C 1.52996 * 109.47425 * 119.99828 * 2 1 3 29 29 H 1.09001 * 109.47016 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47055 * 299.99801 * 1 2 3 31 31 H 1.08995 * 109.47451 * 60.00167 * 1 2 3 32 32 H 1.08997 * 109.47407 * 180.02562 * 4 2 1 33 33 H 1.08995 * 109.47252 * 59.99400 * 4 2 1 34 34 H 1.08999 * 109.47025 * 180.02562 * 5 4 2 35 35 H 1.08995 * 109.47018 * 59.99493 * 5 4 2 36 36 H 1.09001 * 109.46712 * 180.02562 * 6 5 4 37 37 H 1.08995 * 109.46984 * 299.99616 * 6 5 4 38 38 H 1.08993 * 109.46982 * 54.99426 * 9 7 6 39 39 H 1.09003 * 109.47053 * 175.00020 * 9 7 6 40 40 H 1.09004 * 109.47665 * 299.99523 * 10 9 7 41 41 H 1.08997 * 109.47439 * 59.99941 * 10 9 7 42 42 H 1.09001 * 109.46965 * 183.33599 * 12 11 10 43 43 H 1.09000 * 109.46790 * 303.32803 * 12 11 10 44 44 H 0.96998 * 119.99930 * 180.02562 * 16 15 13 45 45 H 1.09001 * 109.46889 * 283.97111 * 21 11 10 46 46 H 1.09000 * 109.47148 * 43.96412 * 21 11 10 47 47 H 1.08003 * 120.41894 * 359.97438 * 23 22 21 48 48 H 1.07998 * 120.79466 * 180.26237 * 24 23 22 49 49 H 1.08005 * 120.42163 * 179.71445 * 25 24 23 50 50 H 1.07999 * 119.61926 * 179.97438 * 26 25 24 51 51 H 1.09007 * 109.47415 * 179.97438 * 28 2 1 52 52 H 1.09000 * 109.47513 * 299.99808 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5300 -2.1637 -1.2493 6 6 2.0401 -2.8849 0.0000 7 6 1.5301 -2.1637 1.2492 8 1 0.4400 -2.1637 1.2493 9 6 2.0396 -2.8853 2.4985 10 6 1.4291 -4.2867 2.5626 11 7 1.9187 -4.9798 3.7618 12 6 1.4278 -4.3285 4.9835 13 6 -0.0753 -4.4230 5.0340 14 1 -0.6068 -4.9835 4.2791 15 6 -0.7721 -3.7939 6.0438 16 7 -0.1249 -3.1118 6.9633 17 14 -2.6354 -3.9105 6.1060 18 1 -3.0308 -5.0954 6.9091 19 1 -3.1878 -2.6819 6.7313 20 1 -3.1692 -4.0469 4.7269 21 6 1.5473 -6.4008 3.7371 22 6 2.3756 -7.1542 4.7457 23 6 1.8721 -7.3765 6.0137 24 6 2.6397 -8.0757 6.9322 25 6 3.8953 -8.5173 6.5429 26 6 4.3343 -8.2523 5.2598 27 7 3.5743 -7.5888 4.4103 28 6 2.0400 -0.7212 1.2492 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 3.1300 -0.7216 -1.2491 33 1 1.6766 -0.2074 -2.1392 34 1 1.8937 -2.6777 -2.1390 35 1 0.4400 -2.1637 -1.2492 36 1 1.6771 -3.9127 -0.0002 37 1 3.1300 -2.8850 -0.0001 38 1 3.1259 -2.9639 2.4550 39 1 1.7513 -2.3224 3.3863 40 1 0.3427 -4.2082 2.6061 41 1 1.7173 -4.8496 1.6749 42 1 1.8526 -4.8252 5.8559 43 1 1.7261 -3.2801 4.9813 44 1 -0.6151 -2.6695 7.6739 45 1 0.4908 -6.5045 3.9843 46 1 1.7290 -6.8066 2.7419 47 1 0.8914 -7.0137 6.2841 48 1 2.2706 -8.2681 7.9288 49 1 4.5223 -9.0611 7.2340 50 1 5.3111 -8.5924 4.9490 51 1 3.1301 -0.7216 1.2490 52 1 1.6768 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089129865.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:29 Heat of formation + Delta-G solvation = -10.314177 kcal Electronic energy + Delta-G solvation = -27254.696853 eV Core-core repulsion = 23830.881633 eV Total energy + Delta-G solvation = -3423.815220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.06463 -40.29456 -38.46402 -34.83569 -34.38087 -33.26376 -32.49137 -32.13814 -29.43102 -28.84242 -27.58121 -26.38567 -25.07395 -24.24062 -23.17780 -23.02950 -21.72646 -21.05819 -19.41451 -18.54713 -17.47759 -17.22138 -16.87419 -16.67516 -16.24420 -16.22271 -15.63618 -15.39707 -15.22001 -14.94281 -14.63299 -14.50969 -14.26121 -14.10811 -13.91901 -13.47051 -13.42176 -13.20973 -13.01920 -12.84617 -12.61962 -12.60358 -12.42375 -12.38994 -12.27698 -12.05501 -11.89378 -11.85006 -11.79585 -11.63446 -11.37586 -11.00805 -10.75808 -10.70255 -10.63416 -10.52875 -10.24645 -9.81303 -8.96091 -8.11502 -6.29766 0.29009 0.48051 1.34821 1.36827 1.45769 2.37405 2.88206 3.13242 3.46616 3.56788 3.82620 3.85147 3.91529 4.03955 4.09042 4.21860 4.27840 4.32527 4.34935 4.40560 4.53840 4.56463 4.58988 4.65256 4.67104 4.72299 4.78688 4.83510 4.88139 4.91384 4.94131 4.99390 5.04226 5.11846 5.17527 5.22141 5.23392 5.25196 5.32146 5.34573 5.38273 5.41380 5.42361 5.47442 5.49974 5.54316 5.63079 5.74783 5.79837 5.92097 6.09416 6.30330 6.55722 6.90527 7.21158 7.40419 8.90324 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010200 B = 0.004168 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.474912 B = 6715.450697 C = 8810.613134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.088 4.088 3 H 0.074 0.926 4 C -0.109 4.109 5 C -0.118 4.118 6 C -0.109 4.109 7 C -0.077 4.077 8 H 0.059 0.941 9 C -0.095 4.095 10 C 0.072 3.928 11 N -0.537 5.537 12 C 0.206 3.794 13 C -0.543 4.543 14 H 0.056 0.944 15 C 0.019 3.981 16 N -0.924 5.924 17 Si 0.946 3.054 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.269 1.269 21 C 0.109 3.891 22 C 0.133 3.867 23 C -0.171 4.171 24 C -0.085 4.085 25 C -0.172 4.172 26 C 0.082 3.918 27 N -0.498 5.498 28 C -0.107 4.107 29 H 0.054 0.946 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.033 0.967 40 H 0.021 0.979 41 H 0.075 0.925 42 H 0.001 0.999 43 H 0.007 0.993 44 H 0.262 0.738 45 H 0.046 0.954 46 H 0.081 0.919 47 H 0.116 0.884 48 H 0.152 0.848 49 H 0.170 0.830 50 H 0.183 0.817 51 H 0.062 0.938 52 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.480 -2.653 -11.162 12.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.107 4.107 3 H 0.092 0.908 4 C -0.146 4.146 5 C -0.155 4.155 6 C -0.146 4.146 7 C -0.096 4.096 8 H 0.077 0.923 9 C -0.133 4.133 10 C -0.056 4.056 11 N -0.260 5.260 12 C 0.079 3.921 13 C -0.582 4.582 14 H 0.074 0.926 15 C -0.181 4.181 16 N -0.564 5.564 17 Si 0.771 3.229 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.193 1.193 21 C -0.019 4.019 22 C -0.004 4.004 23 C -0.192 4.192 24 C -0.111 4.111 25 C -0.192 4.192 26 C -0.075 4.075 27 N -0.208 5.208 28 C -0.144 4.144 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.052 0.948 40 H 0.039 0.961 41 H 0.093 0.907 42 H 0.019 0.981 43 H 0.025 0.975 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.100 0.900 47 H 0.134 0.866 48 H 0.169 0.831 49 H 0.187 0.813 50 H 0.200 0.800 51 H 0.080 0.920 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.272 -2.348 -11.866 13.625 hybrid contribution -2.371 0.088 1.746 2.946 sum 3.902 -2.260 -10.119 11.078 Atomic orbital electron populations 1.21937 0.95594 1.01864 1.01408 1.21082 0.95779 0.99124 0.94681 0.90789 1.21538 1.00595 0.95386 0.97117 1.21567 1.00843 0.95819 0.97321 1.21570 1.00592 0.98732 0.93747 1.21060 0.99725 0.94808 0.93987 0.92264 1.21436 0.99717 0.94842 0.97286 1.21964 0.96879 0.94969 0.91804 1.62397 1.58997 1.00931 1.03674 1.19374 0.92276 0.93118 0.87330 1.21848 0.93812 1.31955 1.10585 0.92580 1.25664 1.02314 0.94779 0.95304 1.70070 1.37194 1.34320 1.14803 0.85745 0.81063 0.77649 0.78422 1.19855 1.21061 1.19325 1.20782 0.95554 0.88628 0.96951 1.21090 0.91409 0.94240 0.93652 1.22122 1.02124 0.99977 0.94974 1.21887 0.94553 0.94754 0.99930 1.22447 0.96668 1.01830 0.98224 1.23318 0.99764 0.94015 0.90437 1.67455 1.04934 1.10265 1.38138 1.21569 1.00403 0.94839 0.97628 0.92678 0.93876 0.91634 0.91806 0.90940 0.91064 0.92033 0.92286 0.92032 0.92515 0.94825 0.96070 0.90694 0.98128 0.97524 0.92851 0.93553 0.90047 0.86563 0.83069 0.81281 0.79963 0.91956 0.93780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 8.50 71.98 0.61 -2.71 16 2 C -0.09 -1.90 3.19 -10.80 -0.03 -1.94 16 3 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 4 C -0.11 -2.02 5.45 30.60 0.17 -1.85 16 5 C -0.12 -2.36 5.65 30.60 0.17 -2.19 16 6 C -0.11 -2.68 4.96 30.59 0.15 -2.53 16 7 C -0.08 -2.27 1.91 -10.79 -0.02 -2.29 16 8 H 0.06 1.89 6.43 -2.38 -0.02 1.87 16 9 C -0.09 -3.52 4.61 30.59 0.14 -3.38 16 10 C 0.07 2.82 4.53 86.30 0.39 3.21 16 11 N -0.54 -23.87 4.66 -905.38 -4.22 -28.09 16 12 C 0.21 10.83 4.70 85.55 0.40 11.23 16 13 C -0.54 -29.38 7.34 25.60 0.19 -29.19 16 14 H 0.06 2.99 5.95 -2.91 -0.02 2.98 16 15 C 0.02 1.04 5.46 84.66 0.46 1.51 16 16 N -0.92 -54.52 13.29 21.45 0.28 -54.23 16 17 Si 0.95 43.45 29.54 68.60 2.03 45.47 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 C 0.11 4.49 5.12 85.55 0.44 4.93 16 22 C 0.13 5.30 5.84 42.55 0.25 5.55 16 23 C -0.17 -6.60 8.46 22.36 0.19 -6.41 16 24 C -0.09 -2.59 10.18 22.47 0.23 -2.36 16 25 C -0.17 -4.37 10.11 22.36 0.23 -4.14 16 26 C 0.08 2.33 11.18 84.67 0.95 3.27 16 27 N -0.50 -18.27 10.27 -183.89 -1.89 -20.16 16 28 C -0.11 -2.87 4.73 30.59 0.14 -2.72 16 29 H 0.05 1.31 4.81 -2.39 -0.01 1.29 16 30 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.06 1.26 6.43 -2.39 -0.02 1.25 16 36 H 0.06 1.49 6.56 -2.39 -0.02 1.47 16 37 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.03 1.48 6.49 -2.39 -0.02 1.47 16 40 H 0.02 0.92 6.62 -2.39 -0.02 0.90 16 41 H 0.07 2.59 6.28 -2.39 -0.02 2.58 16 42 H 0.00 0.04 6.56 -2.39 -0.02 0.02 16 43 H 0.01 0.39 6.32 -2.39 -0.02 0.38 16 44 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 45 H 0.05 2.02 6.02 -2.39 -0.01 2.01 16 46 H 0.08 3.04 7.81 -2.39 -0.02 3.02 16 47 H 0.12 4.95 8.06 -2.91 -0.02 4.93 16 48 H 0.15 3.74 8.06 -2.91 -0.02 3.71 16 49 H 0.17 2.80 8.06 -2.91 -0.02 2.77 16 50 H 0.18 3.71 8.06 -2.91 -0.02 3.69 16 51 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 52 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -64.40 389.24 2.14 -62.26 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: 0.88 Total: 26.76 kcal Atomic # 6 Polarization: -37.07 SS G_CDS: 5.05 Total: -32.01 kcal Atomic # 7 Polarization: -96.67 SS G_CDS: -5.82 Total: -102.49 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -64.40 2.14 -62.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089129865.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.950 kcal (2) G-P(sol) polarization free energy of solvation -64.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds