Wall clock time and date at job start Tue Mar 31 2020 11:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47384 * 2 1 4 4 C 1.53000 * 109.46804 * 119.99765 * 2 1 3 5 5 C 1.53005 * 109.47231 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.46742 * 300.00180 * 5 4 2 7 7 C 1.53000 * 109.47405 * 59.99926 * 6 5 4 8 8 H 1.09000 * 109.46958 * 59.99760 * 7 6 5 9 9 C 1.52996 * 109.47204 * 179.97438 * 7 6 5 10 10 C 1.52998 * 109.47499 * 294.99758 * 9 7 6 11 11 N 1.46892 * 109.47715 * 181.18571 * 10 9 7 12 12 C 1.46908 * 111.00304 * 287.63817 * 11 10 9 13 13 C 1.50701 * 109.46654 * 298.56373 * 12 11 10 14 14 H 1.08000 * 120.00051 * 4.77898 * 13 12 11 15 15 C 1.37874 * 119.99969 * 184.78021 * 13 12 11 16 16 N 1.31515 * 119.99808 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99981 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47199 * 89.99747 * 17 15 13 19 19 H 1.48496 * 109.47520 * 209.99915 * 17 15 13 20 20 H 1.48506 * 109.47048 * 329.99927 * 17 15 13 21 21 C 1.46904 * 111.00491 * 163.67769 * 11 10 9 22 22 C 1.50695 * 109.47030 * 190.00212 * 21 11 10 23 23 C 1.38225 * 119.61866 * 95.00629 * 22 21 11 24 24 C 1.38626 * 119.16495 * 179.97438 * 23 22 21 25 25 C 1.38674 * 118.41842 * 0.02562 * 24 23 22 26 26 C 1.38185 * 119.16239 * 359.97438 * 25 24 23 27 27 N 1.31852 * 119.62101 * 274.71968 * 22 21 11 28 28 C 1.52996 * 109.47295 * 239.99776 * 2 1 3 29 29 H 1.09000 * 109.47608 * 300.00070 * 1 2 3 30 30 H 1.09002 * 109.46832 * 60.00059 * 1 2 3 31 31 H 1.09000 * 109.47384 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47340 * 60.00260 * 4 2 1 33 33 H 1.09001 * 109.47455 * 299.99963 * 4 2 1 34 34 H 1.08994 * 109.47459 * 179.97438 * 5 4 2 35 35 H 1.08996 * 109.46713 * 59.99917 * 5 4 2 36 36 H 1.08996 * 109.47302 * 299.99377 * 6 5 4 37 37 H 1.09000 * 109.46878 * 179.97438 * 6 5 4 38 38 H 1.09004 * 109.47255 * 174.99626 * 9 7 6 39 39 H 1.09000 * 109.47260 * 55.00131 * 9 7 6 40 40 H 1.09004 * 109.46654 * 61.18380 * 10 9 7 41 41 H 1.09002 * 109.47168 * 301.19403 * 10 9 7 42 42 H 1.08993 * 109.46722 * 58.55818 * 12 11 10 43 43 H 1.08994 * 109.47142 * 178.56667 * 12 11 10 44 44 H 0.97003 * 119.99682 * 179.97438 * 16 15 13 45 45 H 1.08999 * 109.46676 * 70.00133 * 21 11 10 46 46 H 1.08995 * 109.46491 * 310.00592 * 21 11 10 47 47 H 1.08003 * 120.41849 * 359.97438 * 23 22 21 48 48 H 1.07996 * 120.79081 * 179.97438 * 24 23 22 49 49 H 1.07999 * 120.41726 * 180.02562 * 25 24 23 50 50 H 1.07993 * 119.61380 * 180.02562 * 26 25 24 51 51 H 1.08994 * 109.47141 * 59.99993 * 28 2 1 52 52 H 1.09008 * 109.46881 * 300.00155 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7218 1.2491 6 6 4.0794 -1.4435 -0.0001 7 6 3.5694 -0.7223 -1.2494 8 1 3.9332 0.3052 -1.2497 9 6 4.0794 -1.4436 -2.4986 10 6 5.6042 -1.3357 -2.5631 11 7 6.0915 -2.0038 -3.7772 12 6 5.9831 -3.4637 -3.6545 13 6 6.8340 -3.9356 -2.5037 14 1 7.3374 -3.2168 -1.8740 15 6 6.9699 -5.2848 -2.2546 16 7 7.7129 -5.6966 -1.2507 17 14 6.0999 -6.5279 -3.3441 18 1 6.9863 -6.9004 -4.4758 19 1 5.7748 -7.7401 -2.5503 20 1 4.8467 -5.9316 -3.8725 21 6 7.4715 -1.6021 -4.0814 22 6 7.8512 -2.1063 -5.4498 23 6 7.7153 -1.2753 -6.5460 24 6 8.0680 -1.7485 -7.8003 25 6 8.5459 -3.0460 -7.9058 26 6 8.6544 -3.8184 -6.7652 27 7 8.3147 -3.3330 -5.5869 28 6 2.0400 -0.7213 -1.2492 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6766 -1.7488 1.2493 33 1 1.6766 -0.2074 2.1393 34 1 3.9332 -1.2352 2.1393 35 1 3.9336 0.3057 1.2488 36 1 3.7157 -2.4710 0.0001 37 1 5.1694 -1.4435 -0.0005 38 1 3.6448 -0.9841 -3.3864 39 1 3.7910 -2.4938 -2.4549 40 1 6.0397 -1.8138 -1.6856 41 1 5.8935 -0.2850 -2.5855 42 1 4.9435 -3.7368 -3.4735 43 1 6.3268 -3.9323 -4.5765 44 1 7.8082 -6.6458 -1.0752 45 1 8.1457 -2.0267 -3.3377 46 1 7.5462 -0.5149 -4.0610 47 1 7.3391 -0.2699 -6.4268 48 1 7.9721 -1.1219 -8.6747 49 1 8.8304 -3.4475 -8.8672 50 1 9.0260 -4.8297 -6.8388 51 1 1.6767 -0.2075 -2.1391 52 1 1.6766 -1.7490 -1.2491 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089129866.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:32 Heat of formation + Delta-G solvation = 8.538716 kcal Electronic energy + Delta-G solvation = -27213.687263 eV Core-core repulsion = 23790.689566 eV Total energy + Delta-G solvation = -3422.997697 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.79816 -38.94697 -36.85546 -33.59641 -32.33999 -32.03371 -31.72042 -31.02005 -28.19681 -27.48360 -26.21106 -24.76746 -23.14778 -22.86457 -21.88063 -21.63100 -20.09754 -19.54231 -19.13115 -16.91241 -16.34488 -15.78506 -15.30785 -15.12883 -14.90813 -14.60323 -14.41052 -14.14375 -13.99855 -13.54120 -13.40414 -13.08619 -13.05320 -12.62737 -12.38405 -12.28610 -12.16767 -11.95253 -11.72396 -11.56317 -11.39717 -11.16381 -11.00950 -10.85454 -10.78956 -10.70036 -10.54313 -10.27613 -10.25359 -10.10905 -9.79039 -9.67856 -9.56031 -9.48127 -9.35591 -8.77829 -8.60734 -8.41174 -7.13409 -5.95731 -3.91176 1.51020 1.69173 3.38391 3.44048 3.48390 4.18353 4.54102 4.71027 4.79022 4.82471 4.90989 5.05307 5.15215 5.25225 5.27134 5.32901 5.40242 5.40869 5.51759 5.54545 5.58595 5.63823 5.66909 5.73307 5.80234 5.87718 5.89418 5.94533 6.02043 6.03164 6.09446 6.13817 6.19388 6.22629 6.29599 6.32831 6.41901 6.43944 6.49978 6.51553 6.55758 6.64251 6.68939 6.75194 6.92574 7.00019 7.06326 7.12352 7.30273 7.70392 8.09591 8.15535 8.57024 8.60394 9.04925 9.69835 11.17802 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012257 B = 0.003841 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.899778 B = 7287.428063 C = 8690.519411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.066 0.934 4 C -0.113 4.113 5 C -0.119 4.119 6 C -0.116 4.116 7 C -0.081 4.081 8 H 0.063 0.937 9 C -0.103 4.103 10 C 0.058 3.942 11 N -0.531 5.531 12 C 0.153 3.847 13 C -0.526 4.526 14 H 0.072 0.928 15 C 0.078 3.922 16 N -0.903 5.903 17 Si 0.874 3.126 18 H -0.276 1.276 19 H -0.292 1.292 20 H -0.269 1.269 21 C 0.102 3.898 22 C 0.157 3.843 23 C -0.165 4.165 24 C -0.085 4.085 25 C -0.189 4.189 26 C 0.096 3.904 27 N -0.449 5.449 28 C -0.107 4.107 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.023 0.977 43 H 0.034 0.966 44 H 0.260 0.740 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.129 0.871 48 H 0.126 0.874 49 H 0.126 0.874 50 H 0.148 0.852 51 H 0.057 0.943 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.319 11.996 -4.475 14.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 H 0.084 0.916 4 C -0.151 4.151 5 C -0.156 4.156 6 C -0.153 4.153 7 C -0.100 4.100 8 H 0.081 0.919 9 C -0.141 4.141 10 C -0.070 4.070 11 N -0.254 5.254 12 C 0.026 3.974 13 C -0.565 4.565 14 H 0.090 0.910 15 C -0.123 4.123 16 N -0.543 5.543 17 Si 0.702 3.298 18 H -0.202 1.202 19 H -0.218 1.218 20 H -0.194 1.194 21 C -0.027 4.027 22 C 0.019 3.981 23 C -0.185 4.185 24 C -0.111 4.111 25 C -0.210 4.210 26 C -0.062 4.062 27 N -0.158 5.158 28 C -0.145 4.145 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.041 0.959 43 H 0.052 0.948 44 H 0.070 0.930 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.147 0.853 48 H 0.144 0.856 49 H 0.144 0.856 50 H 0.165 0.835 51 H 0.076 0.924 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.473 11.460 -4.028 14.262 hybrid contribution 0.080 -0.689 -0.732 1.009 sum -7.393 10.772 -4.760 13.905 Atomic orbital electron populations 1.21835 0.95788 1.01636 1.01153 1.21130 0.94858 0.99514 0.95497 0.91590 1.21592 0.96033 1.00500 0.96938 1.21539 0.95140 1.00470 0.98486 1.21622 1.01183 0.99340 0.93149 1.21087 0.94445 0.99252 0.95216 0.91902 1.21517 0.95640 1.00920 0.96066 1.22029 0.94821 0.96863 0.93297 1.62494 1.17898 1.10232 1.34812 1.20234 0.96425 0.83532 0.97202 1.21443 1.29372 0.92803 1.12884 0.91021 1.24802 0.94594 0.98287 0.94656 1.69922 1.39724 1.14973 1.29646 0.86883 0.80698 0.81141 0.81100 1.20184 1.21808 1.19393 1.20870 0.92420 0.97601 0.91765 1.21294 0.91946 0.89026 0.95810 1.21936 1.01955 1.01498 0.93134 1.21446 0.96632 0.95573 0.97435 1.22041 1.03314 0.95614 0.99984 1.22821 0.95735 0.99763 0.87896 1.67782 1.08527 1.13515 1.25974 1.21620 0.95632 1.00511 0.96697 0.93107 0.92940 0.92804 0.92108 0.92717 0.92322 0.92494 0.91786 0.91224 0.92448 0.91618 0.92285 0.93271 0.95938 0.94831 0.93049 0.91216 0.91386 0.85301 0.85621 0.85637 0.83464 0.92397 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.19 37.16 0.34 -1.05 16 2 C -0.09 -0.99 2.72 -90.62 -0.25 -1.24 16 3 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.11 -1.27 5.20 -26.73 -0.14 -1.41 16 5 C -0.12 -1.48 5.92 -26.73 -0.16 -1.64 16 6 C -0.12 -1.72 4.96 -26.73 -0.13 -1.85 16 7 C -0.08 -1.12 2.19 -90.65 -0.20 -1.32 16 8 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 9 C -0.10 -1.70 4.71 -26.73 -0.13 -1.83 16 10 C 0.06 1.06 4.53 -3.83 -0.02 1.04 16 11 N -0.53 -10.86 4.65 -237.52 -1.11 -11.97 16 12 C 0.15 3.71 3.77 -4.97 -0.02 3.69 16 13 C -0.53 -14.51 7.88 -34.44 -0.27 -14.79 16 14 H 0.07 2.14 6.20 -52.49 -0.33 1.81 16 15 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 16 N -0.90 -27.79 13.96 55.43 0.77 -27.01 16 17 Si 0.87 22.42 27.38 -169.99 -4.65 17.77 16 18 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 20 H -0.27 -6.73 6.68 56.52 0.38 -6.35 16 21 C 0.10 1.97 5.09 -4.98 -0.03 1.95 16 22 C 0.16 2.97 5.69 -82.59 -0.47 2.50 16 23 C -0.16 -2.51 9.72 -39.44 -0.38 -2.89 16 24 C -0.08 -1.13 10.18 -39.28 -0.40 -1.53 16 25 C -0.19 -2.61 10.11 -39.44 -0.40 -3.01 16 26 C 0.10 1.63 11.18 -17.55 -0.20 1.43 16 27 N -0.45 -9.31 8.80 -9.48 -0.08 -9.40 16 28 C -0.11 -1.31 4.48 -26.76 -0.12 -1.43 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.15 6.59 -51.93 -0.34 0.81 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 1.24 6.80 -51.93 -0.35 0.88 16 40 H 0.06 1.24 4.66 -51.93 -0.24 1.00 16 41 H 0.05 0.80 7.80 -51.93 -0.41 0.39 16 42 H 0.02 0.57 6.08 -51.93 -0.32 0.25 16 43 H 0.03 0.86 5.38 -51.93 -0.28 0.59 16 44 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 45 H 0.07 1.57 6.56 -51.93 -0.34 1.23 16 46 H 0.07 1.10 7.76 -51.93 -0.40 0.70 16 47 H 0.13 1.66 8.06 -52.48 -0.42 1.23 16 48 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 49 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 50 H 0.15 2.24 8.06 -52.49 -0.42 1.81 16 51 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 52 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 LS Contribution 392.91 15.07 5.92 5.92 Total: -1.00 -31.10 392.91 -11.56 -42.66 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -9.35 Total: 3.23 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -3.06 Total: -21.20 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -0.42 Total: -48.38 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.65 Total: 17.77 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.10 -11.56 -42.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089129866.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.199 kcal (2) G-P(sol) polarization free energy of solvation -31.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds