Wall clock time and date at job start Tue Mar 31 2020 11:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47384 * 2 1 4 4 C 1.53000 * 109.46804 * 119.99765 * 2 1 3 5 5 C 1.53005 * 109.47231 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.46742 * 300.00180 * 5 4 2 7 7 C 1.53000 * 109.47405 * 59.99926 * 6 5 4 8 8 H 1.09000 * 109.46958 * 59.99760 * 7 6 5 9 9 C 1.52996 * 109.47204 * 179.97438 * 7 6 5 10 10 C 1.52998 * 109.47499 * 294.99758 * 9 7 6 11 11 N 1.46892 * 109.47715 * 181.18571 * 10 9 7 12 12 C 1.46908 * 111.00304 * 287.63817 * 11 10 9 13 13 C 1.50701 * 109.46654 * 298.56373 * 12 11 10 14 14 H 1.08000 * 120.00051 * 4.77898 * 13 12 11 15 15 C 1.37874 * 119.99969 * 184.78021 * 13 12 11 16 16 N 1.31515 * 119.99808 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99981 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47199 * 89.99747 * 17 15 13 19 19 H 1.48496 * 109.47520 * 209.99915 * 17 15 13 20 20 H 1.48506 * 109.47048 * 329.99927 * 17 15 13 21 21 C 1.46904 * 111.00491 * 163.67769 * 11 10 9 22 22 C 1.50695 * 109.47030 * 190.00212 * 21 11 10 23 23 C 1.38225 * 119.61866 * 95.00629 * 22 21 11 24 24 C 1.38626 * 119.16495 * 179.97438 * 23 22 21 25 25 C 1.38674 * 118.41842 * 0.02562 * 24 23 22 26 26 C 1.38185 * 119.16239 * 359.97438 * 25 24 23 27 27 N 1.31852 * 119.62101 * 274.71968 * 22 21 11 28 28 C 1.52996 * 109.47295 * 239.99776 * 2 1 3 29 29 H 1.09000 * 109.47608 * 300.00070 * 1 2 3 30 30 H 1.09002 * 109.46832 * 60.00059 * 1 2 3 31 31 H 1.09000 * 109.47384 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47340 * 60.00260 * 4 2 1 33 33 H 1.09001 * 109.47455 * 299.99963 * 4 2 1 34 34 H 1.08994 * 109.47459 * 179.97438 * 5 4 2 35 35 H 1.08996 * 109.46713 * 59.99917 * 5 4 2 36 36 H 1.08996 * 109.47302 * 299.99377 * 6 5 4 37 37 H 1.09000 * 109.46878 * 179.97438 * 6 5 4 38 38 H 1.09004 * 109.47255 * 174.99626 * 9 7 6 39 39 H 1.09000 * 109.47260 * 55.00131 * 9 7 6 40 40 H 1.09004 * 109.46654 * 61.18380 * 10 9 7 41 41 H 1.09002 * 109.47168 * 301.19403 * 10 9 7 42 42 H 1.08993 * 109.46722 * 58.55818 * 12 11 10 43 43 H 1.08994 * 109.47142 * 178.56667 * 12 11 10 44 44 H 0.97003 * 119.99682 * 179.97438 * 16 15 13 45 45 H 1.08999 * 109.46676 * 70.00133 * 21 11 10 46 46 H 1.08995 * 109.46491 * 310.00592 * 21 11 10 47 47 H 1.08003 * 120.41849 * 359.97438 * 23 22 21 48 48 H 1.07996 * 120.79081 * 179.97438 * 24 23 22 49 49 H 1.07999 * 120.41726 * 180.02562 * 25 24 23 50 50 H 1.07993 * 119.61380 * 180.02562 * 26 25 24 51 51 H 1.08994 * 109.47141 * 59.99993 * 28 2 1 52 52 H 1.09008 * 109.46881 * 300.00155 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7218 1.2491 6 6 4.0794 -1.4435 -0.0001 7 6 3.5694 -0.7223 -1.2494 8 1 3.9332 0.3052 -1.2497 9 6 4.0794 -1.4436 -2.4986 10 6 5.6042 -1.3357 -2.5631 11 7 6.0915 -2.0038 -3.7772 12 6 5.9831 -3.4637 -3.6545 13 6 6.8340 -3.9356 -2.5037 14 1 7.3374 -3.2168 -1.8740 15 6 6.9699 -5.2848 -2.2546 16 7 7.7129 -5.6966 -1.2507 17 14 6.0999 -6.5279 -3.3441 18 1 6.9863 -6.9004 -4.4758 19 1 5.7748 -7.7401 -2.5503 20 1 4.8467 -5.9316 -3.8725 21 6 7.4715 -1.6021 -4.0814 22 6 7.8512 -2.1063 -5.4498 23 6 7.7153 -1.2753 -6.5460 24 6 8.0680 -1.7485 -7.8003 25 6 8.5459 -3.0460 -7.9058 26 6 8.6544 -3.8184 -6.7652 27 7 8.3147 -3.3330 -5.5869 28 6 2.0400 -0.7213 -1.2492 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6766 -1.7488 1.2493 33 1 1.6766 -0.2074 2.1393 34 1 3.9332 -1.2352 2.1393 35 1 3.9336 0.3057 1.2488 36 1 3.7157 -2.4710 0.0001 37 1 5.1694 -1.4435 -0.0005 38 1 3.6448 -0.9841 -3.3864 39 1 3.7910 -2.4938 -2.4549 40 1 6.0397 -1.8138 -1.6856 41 1 5.8935 -0.2850 -2.5855 42 1 4.9435 -3.7368 -3.4735 43 1 6.3268 -3.9323 -4.5765 44 1 7.8082 -6.6458 -1.0752 45 1 8.1457 -2.0267 -3.3377 46 1 7.5462 -0.5149 -4.0610 47 1 7.3391 -0.2699 -6.4268 48 1 7.9721 -1.1219 -8.6747 49 1 8.8304 -3.4475 -8.8672 50 1 9.0260 -4.8297 -6.8388 51 1 1.6767 -0.2075 -2.1391 52 1 1.6766 -1.7490 -1.2491 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089129866.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:31 Heat of formation + Delta-G solvation = -9.041301 kcal Electronic energy + Delta-G solvation = -27214.449590 eV Core-core repulsion = 23790.689566 eV Total energy + Delta-G solvation = -3423.760024 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.07859 -40.05982 -38.41229 -34.86031 -34.41034 -33.23041 -32.83513 -32.32539 -29.93552 -28.96473 -27.15907 -26.30277 -24.74775 -24.22766 -23.03613 -22.79669 -21.46690 -20.68939 -20.58327 -19.00959 -17.57208 -17.08800 -16.72004 -16.59425 -16.17775 -16.09309 -15.87058 -15.52971 -15.19718 -14.71188 -14.63647 -14.49044 -14.33412 -14.20470 -13.85491 -13.61036 -13.26921 -13.20269 -13.15389 -12.86057 -12.74578 -12.62980 -12.51480 -12.35104 -12.14883 -12.00036 -11.86400 -11.85261 -11.73577 -11.63264 -11.33858 -11.23682 -10.77343 -10.75965 -10.71825 -10.63101 -10.06699 -9.84331 -8.92700 -8.24811 -6.22606 0.29707 0.54533 1.28916 1.31155 1.40148 2.35541 2.88705 3.13339 3.40738 3.65058 3.80489 3.88559 3.90729 3.94305 4.10909 4.17424 4.27833 4.32280 4.38300 4.42739 4.48821 4.52469 4.62491 4.63222 4.66240 4.75556 4.81235 4.85754 4.87935 4.91054 4.93959 5.01925 5.05563 5.07296 5.10837 5.14362 5.19270 5.23953 5.25804 5.34951 5.35541 5.37942 5.40105 5.44545 5.50335 5.53575 5.57181 5.63730 5.72915 5.94353 6.13057 6.37848 6.46273 6.78231 7.34109 7.41082 8.92141 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012257 B = 0.003841 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.899778 B = 7287.428063 C = 8690.519411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.077 0.923 4 C -0.111 4.111 5 C -0.115 4.115 6 C -0.114 4.114 7 C -0.073 4.073 8 H 0.080 0.920 9 C -0.095 4.095 10 C 0.059 3.941 11 N -0.522 5.522 12 C 0.170 3.830 13 C -0.510 4.510 14 H 0.035 0.965 15 C 0.020 3.980 16 N -0.949 5.949 17 Si 0.933 3.067 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.258 1.258 21 C 0.106 3.894 22 C 0.123 3.877 23 C -0.158 4.158 24 C -0.076 4.076 25 C -0.172 4.172 26 C 0.067 3.933 27 N -0.508 5.508 28 C -0.104 4.104 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.036 0.964 37 H 0.042 0.958 38 H 0.072 0.928 39 H 0.034 0.966 40 H 0.022 0.978 41 H 0.077 0.923 42 H 0.015 0.985 43 H 0.026 0.974 44 H 0.260 0.740 45 H 0.022 0.978 46 H 0.102 0.898 47 H 0.156 0.844 48 H 0.172 0.828 49 H 0.165 0.835 50 H 0.152 0.848 51 H 0.071 0.929 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.183 14.503 -7.266 18.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 H 0.095 0.905 4 C -0.149 4.149 5 C -0.152 4.152 6 C -0.152 4.152 7 C -0.092 4.092 8 H 0.098 0.902 9 C -0.133 4.133 10 C -0.068 4.068 11 N -0.245 5.245 12 C 0.042 3.958 13 C -0.549 4.549 14 H 0.053 0.947 15 C -0.177 4.177 16 N -0.591 5.591 17 Si 0.758 3.242 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.182 1.182 21 C -0.023 4.023 22 C -0.015 4.015 23 C -0.179 4.179 24 C -0.102 4.102 25 C -0.192 4.192 26 C -0.090 4.090 27 N -0.218 5.218 28 C -0.141 4.141 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.091 0.909 39 H 0.053 0.947 40 H 0.040 0.960 41 H 0.096 0.904 42 H 0.033 0.967 43 H 0.044 0.956 44 H 0.069 0.931 45 H 0.040 0.960 46 H 0.120 0.880 47 H 0.174 0.826 48 H 0.189 0.811 49 H 0.182 0.818 50 H 0.169 0.831 51 H 0.090 0.910 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.347 13.984 -6.827 18.153 hybrid contribution 0.773 -1.389 0.103 1.593 sum -8.574 12.596 -6.724 16.654 Atomic orbital electron populations 1.21804 0.94453 1.01652 1.02212 1.21114 0.95933 0.99557 0.94026 0.90487 1.21588 0.94664 1.00352 0.98261 1.21507 0.96376 1.00647 0.96693 1.21566 0.99456 0.98563 0.95628 1.21030 0.95862 0.99276 0.92981 0.90208 1.21450 0.94135 0.99535 0.98154 1.22090 0.96027 0.97712 0.90999 1.62516 1.18916 1.07742 1.35295 1.19907 0.94707 0.86184 0.94999 1.21607 1.28374 0.92047 1.12834 0.94700 1.25594 0.95663 1.00419 0.96058 1.70062 1.41980 1.15332 1.31761 0.85930 0.79987 0.78879 0.79388 1.19748 1.21164 1.18191 1.20891 0.90355 0.99291 0.91735 1.21236 0.94311 0.89635 0.96308 1.22183 1.00910 1.01993 0.92767 1.21976 0.94533 0.95649 0.98027 1.22423 1.01037 0.95459 1.00255 1.23081 0.96878 1.00735 0.88285 1.67592 1.10531 1.15185 1.28514 1.21591 0.93922 1.00234 0.98365 0.91874 0.92093 0.93346 0.93178 0.90833 0.92756 0.91109 0.94505 0.93961 0.90923 0.94746 0.95986 0.90424 0.96748 0.95596 0.93069 0.95958 0.87958 0.82619 0.81071 0.81768 0.83101 0.91038 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.19 71.98 0.66 -1.68 16 2 C -0.09 -1.70 2.72 -10.80 -0.03 -1.73 16 3 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 4 C -0.11 -2.35 5.20 30.60 0.16 -2.19 16 5 C -0.11 -2.83 5.92 30.60 0.18 -2.65 16 6 C -0.11 -3.58 4.96 30.59 0.15 -3.43 16 7 C -0.07 -1.98 2.19 -10.81 -0.02 -2.00 16 8 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 9 C -0.09 -3.14 4.71 30.59 0.14 -3.00 16 10 C 0.06 2.24 4.53 86.30 0.39 2.63 16 11 N -0.52 -21.79 4.65 -905.39 -4.21 -26.00 16 12 C 0.17 8.55 3.77 85.56 0.32 8.87 16 13 C -0.51 -29.94 7.88 25.60 0.20 -29.74 16 14 H 0.03 2.27 6.20 -2.91 -0.02 2.25 16 15 C 0.02 1.19 5.47 84.65 0.46 1.66 16 16 N -0.95 -61.66 13.96 21.45 0.30 -61.36 16 17 Si 0.93 47.86 27.38 68.60 1.88 49.74 16 18 H -0.27 -13.70 7.11 99.48 0.71 -12.99 16 19 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 20 H -0.26 -12.63 6.68 99.48 0.66 -11.96 16 21 C 0.11 4.20 5.09 85.55 0.44 4.63 16 22 C 0.12 4.61 5.69 42.55 0.24 4.85 16 23 C -0.16 -4.37 9.72 22.36 0.22 -4.15 16 24 C -0.08 -1.69 10.18 22.47 0.23 -1.46 16 25 C -0.17 -4.17 10.11 22.36 0.23 -3.94 16 26 C 0.07 2.26 11.18 84.67 0.95 3.21 16 27 N -0.51 -21.55 8.80 -183.90 -1.62 -23.17 16 28 C -0.10 -2.40 4.48 30.57 0.14 -2.26 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 34 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.04 1.52 6.59 -2.39 -0.02 1.51 16 38 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 39 H 0.03 1.34 6.80 -2.39 -0.02 1.33 16 40 H 0.02 1.00 4.66 -2.39 -0.01 0.99 16 41 H 0.08 2.47 7.80 -2.39 -0.02 2.45 16 42 H 0.01 0.75 6.08 -2.39 -0.01 0.74 16 43 H 0.03 1.37 5.38 -2.39 -0.01 1.36 16 44 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 45 H 0.02 1.08 6.56 -2.39 -0.02 1.07 16 46 H 0.10 3.24 7.76 -2.39 -0.02 3.22 16 47 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 48 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 49 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 50 H 0.15 4.63 8.06 -2.91 -0.02 4.61 16 51 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 52 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -73.69 392.91 2.22 -71.46 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: 0.82 Total: 21.72 kcal Atomic # 6 Polarization: -37.44 SS G_CDS: 5.06 Total: -32.38 kcal Atomic # 7 Polarization: -105.00 SS G_CDS: -5.53 Total: -110.54 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 1.88 Total: 49.74 kcal Total: -73.69 2.22 -71.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089129866.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.422 kcal (2) G-P(sol) polarization free energy of solvation -73.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds